RNA–Protein interactions for RNA: ENST00000341753.10

TRIM28-202, Transcript of tripartite motif containing 28, humanhuman

TSL 1 (best) BASIC

Gene TRIM28, Length 2,709 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM28-202ENST00000341753 ANKHQ9HCJ1 492 aa21.7■■□□□ 1.06
TRIM28-202ENST00000341753 MAN2B2Q9Y2E5 1009 aa21.7■■□□□ 1.06
TRIM28-202ENST00000341753 UGT2A1Q9Y4X1 527 aa21.7■■□□□ 1.06
TRIM28-202ENST00000341753 PCDHGB6Q9Y5F9 930 aa21.7■■□□□ 1.06
TRIM28-202ENST00000341753 TET1Q8NFU7 2136 aa21.69■■□□□ 1.06
TRIM28-202ENST00000341753 EVPLLA8MZ36 301 aa21.69■■□□□ 1.06
TRIM28-202ENST00000341753 CLIC1O00299 241 aa21.69■■□□□ 1.06
TRIM28-202ENST00000341753 CPSF4O95639 269 aaKnown RBP21.69■■□□□ 1.06
TRIM28-202ENST00000341753 EOMESO95936 686 aa21.69■■□□□ 1.06
TRIM28-202ENST00000341753 MYCP01106 439 aaPredicted RBP21.69■■□□□ 1.06
TRIM28-202ENST00000341753 KRT8P05787 483 aa21.69■■□□□ 1.06
TRIM28-202ENST00000341753 RPL17P18621 184 aaKnown RBP21.69■■□□□ 1.06
TRIM28-202ENST00000341753 UGT2B10P36537 528 aa21.69■■□□□ 1.06
TRIM28-202ENST00000341753 NKX3-2P78367 333 aa21.69■■□□□ 1.06
TRIM28-202ENST00000341753 VMACQ2NL98 169 aa21.69■■□□□ 1.06
TRIM28-202ENST00000341753 ZZZ3Q8IYH5 903 aa21.69■■□□□ 1.06
TRIM28-202ENST00000341753 PANX1Q96RD7 426 aa21.69■■□□□ 1.06
TRIM28-202ENST00000341753 TLR8Q9NR97 1041 aaKnown RBP21.69■■□□□ 1.06
TRIM28-202ENST00000341753 DDX28Q9NUL7 540 aaKnown RBP21.69■■□□□ 1.06
TRIM28-202ENST00000341753 TMEM184CQ9NVA4 438 aa21.69■■□□□ 1.06
TRIM28-202ENST00000341753 FBXL12Q9NXK8 326 aa21.69■■□□□ 1.06
TRIM28-202ENST00000341753 EHD3Q9NZN3 535 aa21.69■■□□□ 1.06
TRIM28-202ENST00000341753 AP3M1Q9Y2T2 418 aa21.69■■□□□ 1.06
TRIM28-202ENST00000341753 MTMR11A4FU01 709 aa21.69■■□□□ 1.06
TRIM28-202ENST00000341753 GUCY1B2O75343 617 aa21.69■■□□□ 1.06
TRIM28-202ENST00000341753 KCNK5O95279 499 aa21.69■■□□□ 1.06
TRIM28-202ENST00000341753 PTHP01270 115 aa21.69■■□□□ 1.06
TRIM28-202ENST00000341753 F11P03951 625 aa21.69■■□□□ 1.06
TRIM28-202ENST00000341753 NUDT7P0C024 238 aa21.69■■□□□ 1.06
TRIM28-202ENST00000341753 CACNG1Q06432 222 aa21.69■■□□□ 1.06
TRIM28-202ENST00000341753 NXNL2Q5VZ03 156 aa21.69■■□□□ 1.06
TRIM28-202ENST00000341753 SLC46A3Q7Z3Q1 461 aa21.69■■□□□ 1.06
TRIM28-202ENST00000341753 IL17RDQ8NFM7 739 aa21.69■■□□□ 1.06
TRIM28-202ENST00000341753 ZNF675Q8TD23 568 aa21.69■■□□□ 1.06
TRIM28-202ENST00000341753 GGHQ92820 318 aa21.69■■□□□ 1.06
TRIM28-202ENST00000341753 FUBP3Q96I24 572 aaKnown RBP eCLIP21.69■■□□□ 1.06
TRIM28-202ENST00000341753 BOLA1Q9Y3E2 137 aa21.69■■□□□ 1.06
TRIM28-202ENST00000341753 ADAM12O43184 909 aa21.68■■□□□ 1.06
TRIM28-202ENST00000341753 PRAMEF1O95521 474 aa21.68■■□□□ 1.06
TRIM28-202ENST00000341753 TNFRSF1BP20333 461 aa21.68■■□□□ 1.06
TRIM28-202ENST00000341753 TM4SF4P48230 202 aa21.68■■□□□ 1.06
TRIM28-202ENST00000341753 RGS4P49798 205 aa21.68■■□□□ 1.06
TRIM28-202ENST00000341753 TUBA3EQ6PEY2 450 aa21.68■■□□□ 1.06
TRIM28-202ENST00000341753 TCAIMQ8N3R3 496 aa21.68■■□□□ 1.06
TRIM28-202ENST00000341753 DBF4BQ8NFT6 615 aa21.68■■□□□ 1.06
TRIM28-202ENST00000341753 USP7Q93009 1102 aa21.68■■□□□ 1.06
TRIM28-202ENST00000341753 DMRTB1Q96MA1 342 aa21.68■■□□□ 1.06
TRIM28-202ENST00000341753 RUBCNLQ9H714 662 aa21.68■■□□□ 1.06
TRIM28-202ENST00000341753 MOV10Q9HCE1 1003 aaKnown RBP21.68■■□□□ 1.06
TRIM28-202ENST00000341753 FPGTO14772 594 aa21.68■■□□□ 1.06
TRIM28-202ENST00000341753 RPLP0P05388 317 aaKnown RBP21.68■■□□□ 1.06
TRIM28-202ENST00000341753 EBLN1P0CF75 366 aa21.68■■□□□ 1.06
TRIM28-202ENST00000341753 SLC11A1P49279 550 aa21.68■■□□□ 1.06
TRIM28-202ENST00000341753 RACK1P63244 317 aaKnown RBP21.68■■□□□ 1.06
TRIM28-202ENST00000341753 ELP6Q0PNE2 266 aa21.68■■□□□ 1.06
TRIM28-202ENST00000341753 SF1Q15637 639 aaKnown RBP21.68■■□□□ 1.06
TRIM28-202ENST00000341753 TCTN1Q2MV58 587 aa21.68■■□□□ 1.06
TRIM28-202ENST00000341753 DENND1CQ8IV53 801 aa21.68■■□□□ 1.06
TRIM28-202ENST00000341753 CLECL1Q8IZS7 167 aa21.68■■□□□ 1.06
TRIM28-202ENST00000341753 TP53INP1Q96A56 240 aa21.68■■□□□ 1.06
TRIM28-202ENST00000341753 NUAK2Q9H093 628 aa21.68■■□□□ 1.06
TRIM28-202ENST00000341753 MARCH5Q9NX47 278 aa21.68■■□□□ 1.06
TRIM28-202ENST00000341753 IL17CQ9P0M4 197 aa21.68■■□□□ 1.06
TRIM28-202ENST00000341753 PSORS1C1Q9UIG5 152 aa21.68■■□□□ 1.06
TRIM28-202ENST00000341753 N6AMT1Q9Y5N5 214 aa21.68■■□□□ 1.06
TRIM28-202ENST00000341753 LINC00854A0A1B0GVQ3 168 aa21.67■■□□□ 1.06
TRIM28-202ENST00000341753 CTDSP2O14595 271 aa21.67■■□□□ 1.06
TRIM28-202ENST00000341753 INPPL1O15357 1258 aa21.67■■□□□ 1.06
TRIM28-202ENST00000341753 KDELR3O43731 214 aa21.67■■□□□ 1.06
TRIM28-202ENST00000341753 CYP7B1O75881 506 aa21.67■■□□□ 1.06
TRIM28-202ENST00000341753 ATXN7L2Q5T6C5 722 aaPredicted RBP21.67■■□□□ 1.06
TRIM28-202ENST00000341753 PTOV1Q86YD1 416 aa21.67■■□□□ 1.06
TRIM28-202ENST00000341753 STK40Q8N2I9 435 aa21.67■■□□□ 1.06
TRIM28-202ENST00000341753 BEND7Q8N7W2 519 aaPredicted RBP21.67■■□□□ 1.06
TRIM28-202ENST00000341753 OR52J3Q8NH60 311 aa21.67■■□□□ 1.06
TRIM28-202ENST00000341753 PITX2Q99697 317 aa21.67■■□□□ 1.06
TRIM28-202ENST00000341753 TRPS1Q9UHF7 1281 aa21.67■■□□□ 1.06
TRIM28-202ENST00000341753 PCDHGA3Q9Y5H0 932 aa21.67■■□□□ 1.06
TRIM28-202ENST00000341753 MED26O95402 600 aa21.67■■□□□ 1.06
TRIM28-202ENST00000341753 CLDN9O95484 217 aa21.67■■□□□ 1.06
TRIM28-202ENST00000341753 RPLP2P05387 115 aaKnown RBP21.67■■□□□ 1.06
TRIM28-202ENST00000341753 RHOCP08134 193 aa21.67■■□□□ 1.06
TRIM28-202ENST00000341753 EPORP19235 508 aa21.67■■□□□ 1.06
TRIM28-202ENST00000341753 CST5P28325 142 aaPredicted RBP21.67■■□□□ 1.06
TRIM28-202ENST00000341753 RRM2P31350 389 aa21.67■■□□□ 1.06
TRIM28-202ENST00000341753 CASP9P55211 416 aa21.67■■□□□ 1.06
TRIM28-202ENST00000341753 SEMG2Q02383 582 aa21.67■■□□□ 1.06
TRIM28-202ENST00000341753 ZNF45Q02386 682 aa21.67■■□□□ 1.06
TRIM28-202ENST00000341753 ARMCX4Q5H9R4 360 aa21.67■■□□□ 1.06
TRIM28-202ENST00000341753 FAHD1Q6P587 224 aa21.67■■□□□ 1.06
TRIM28-202ENST00000341753 CARNMT1Q8N4J0 409 aa21.67■■□□□ 1.06
TRIM28-202ENST00000341753 MAL2Q969L2 176 aa21.67■■□□□ 1.06
TRIM28-202ENST00000341753 ASB8Q9H765 288 aa21.67■■□□□ 1.06
TRIM28-202ENST00000341753 SLC6A14Q9UN76 642 aa21.67■■□□□ 1.06
TRIM28-202ENST00000341753 STK16O75716 305 aa21.66■■□□□ 1.06
TRIM28-202ENST00000341753 SEMG1P04279 462 aa21.66■■□□□ 1.06
TRIM28-202ENST00000341753 PSMA3P25788 255 aa21.66■■□□□ 1.06
TRIM28-202ENST00000341753 OR2B6P58173 313 aa21.66■■□□□ 1.06
TRIM28-202ENST00000341753 ATAD3CQ5T2N8 411 aa21.66■■□□□ 1.06
TRIM28-202ENST00000341753 LILRB4Q8NHJ6 448 aa21.66■■□□□ 1.06
Retrieved 100 of 20,778 RNA–protein pairs in 28.6 ms