RNA–Protein interactions for RNA: ENST00000339872.8

HMGB1-202, Transcript of high mobility group box 1, humanhuman

APPRIS P1 TSL 2 BASIC

Gene HMGB1, Length 2,319 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1-202ENST00000339872 TMEM145Q8NBT3 493 aa12.9□□□□□ -0.34
HMGB1-202ENST00000339872 ZNF740Q8NDX6 193 aa12.9□□□□□ -0.34
HMGB1-202ENST00000339872 EGLN2Q96KS0 407 aa12.9□□□□□ -0.34
HMGB1-202ENST00000339872 FCRL1Q96LA6 429 aa12.9□□□□□ -0.34
HMGB1-202ENST00000339872 GPR174Q9BXC1 333 aa12.9□□□□□ -0.34
HMGB1-202ENST00000339872 FOXQ1Q9C009 403 aa12.9□□□□□ -0.34
HMGB1-202ENST00000339872 XKR8Q9H6D3 395 aa12.9□□□□□ -0.34
HMGB1-202ENST00000339872 CMTM6Q9NX76 183 aa12.9□□□□□ -0.34
HMGB1-202ENST00000339872 SCHIP1Q9P0W5 487 aaPredicted RBP12.9□□□□□ -0.34
HMGB1-202ENST00000339872 GMPR2Q9P2T1 348 aaKnown RBP12.9□□□□□ -0.34
HMGB1-202ENST00000339872 PNMA8BQ9ULN7 279 aaPredicted RBP12.9□□□□□ -0.34
HMGB1-202ENST00000339872 RUVBL1Q9Y265 456 aaKnown RBP12.9□□□□□ -0.34
HMGB1-202ENST00000339872 MRPS17Q9Y2R5 130 aaKnown RBP12.9□□□□□ -0.34
HMGB1-202ENST00000339872 TRIOO75962 3097 aa12.9□□□□□ -0.34
HMGB1-202ENST00000339872 FANCMQ8IYD8 2048 aa12.9□□□□□ -0.34
HMGB1-202ENST00000339872 A0A1W2PPV9 198 aa12.9□□□□□ -0.34
HMGB1-202ENST00000339872 RASGRP1O95267 797 aa12.9□□□□□ -0.34
HMGB1-202ENST00000339872 ANP32DO95626 131 aa12.9□□□□□ -0.34
HMGB1-202ENST00000339872 IL6P05231 212 aa12.9□□□□□ -0.34
HMGB1-202ENST00000339872 PGRP06401 933 aa12.9□□□□□ -0.34
HMGB1-202ENST00000339872 RAB28P51157 221 aa12.9□□□□□ -0.34
HMGB1-202ENST00000339872 CLNS1AP54105 237 aaKnown RBP12.9□□□□□ -0.34
HMGB1-202ENST00000339872 YPEL5P62699 121 aa12.9□□□□□ -0.34
HMGB1-202ENST00000339872 MRPS22P82650 360 aaKnown RBP12.9□□□□□ -0.34
HMGB1-202ENST00000339872 CTBSQ01459 385 aa12.9□□□□□ -0.34
HMGB1-202ENST00000339872 MLLT1Q03111 559 aaPredicted RBP12.9□□□□□ -0.34
HMGB1-202ENST00000339872 RPE65Q16518 533 aa12.9□□□□□ -0.34
HMGB1-202ENST00000339872 RABL3Q5HYI8 236 aa12.9□□□□□ -0.34
HMGB1-202ENST00000339872 Q6ZSR6 202 aa12.9□□□□□ -0.34
HMGB1-202ENST00000339872 KIAA2013Q8IYS2 634 aa12.9□□□□□ -0.34
HMGB1-202ENST00000339872 C1orf52Q8N6N3 182 aaKnown RBP12.9□□□□□ -0.34
HMGB1-202ENST00000339872 FRMD1Q8N878 549 aa12.9□□□□□ -0.34
HMGB1-202ENST00000339872 GPR156Q8NFN8 814 aa12.9□□□□□ -0.34
HMGB1-202ENST00000339872 OR52E1Q8NGJ3 308 aa12.9□□□□□ -0.34
HMGB1-202ENST00000339872 CDC26Q8NHZ8 85 aa12.9□□□□□ -0.34
HMGB1-202ENST00000339872 GFM2Q969S9 779 aaKnown RBP12.9□□□□□ -0.34
HMGB1-202ENST00000339872 TMEM125Q96AQ2 219 aa12.9□□□□□ -0.34
HMGB1-202ENST00000339872 BIRC7Q96CA5 298 aa12.9□□□□□ -0.34
HMGB1-202ENST00000339872 PCBD2Q9H0N5 130 aa12.9□□□□□ -0.34
HMGB1-202ENST00000339872 MVB12BQ9H7P6 319 aa12.9□□□□□ -0.34
HMGB1-202ENST00000339872 LTB4R2Q9NPC1 389 aa12.9□□□□□ -0.34
HMGB1-202ENST00000339872 DMRT3Q9NQL9 472 aa12.9□□□□□ -0.34
HMGB1-202ENST00000339872 CUEDC1Q9NWM3 386 aaPredicted RBP12.9□□□□□ -0.34
HMGB1-202ENST00000339872 TBC1D29Q9UFV1 150 aa12.9□□□□□ -0.34
HMGB1-202ENST00000339872 PCDHA9Q9Y5H5 950 aa12.9□□□□□ -0.34
HMGB1-202ENST00000339872 PRAMEF33A0A0G2JMD5 474 aa12.89□□□□□ -0.35
HMGB1-202ENST00000339872 C10orf142B7Z368 130 aa12.89□□□□□ -0.35
HMGB1-202ENST00000339872 PRAMEF26H0Y7S4 382 aa12.89□□□□□ -0.35
HMGB1-202ENST00000339872 MYO1DO94832 1006 aa12.89□□□□□ -0.35
HMGB1-202ENST00000339872 NPPAP01160 153 aa12.89□□□□□ -0.35
HMGB1-202ENST00000339872 MTHFD1P11586 935 aaKnown RBP12.89□□□□□ -0.35
HMGB1-202ENST00000339872 CD6P30203 668 aa12.89□□□□□ -0.35
HMGB1-202ENST00000339872 CCR5P51681 352 aa12.89□□□□□ -0.35
HMGB1-202ENST00000339872 SRP54P61011 504 aaKnown RBP12.89□□□□□ -0.35
HMGB1-202ENST00000339872 MAPKAPK3Q16644 382 aa12.89□□□□□ -0.35
HMGB1-202ENST00000339872 C6orf10Q5SRN2 563 aa12.89□□□□□ -0.35
HMGB1-202ENST00000339872 C10orf62Q5T681 223 aaPredicted RBP12.89□□□□□ -0.35
HMGB1-202ENST00000339872 SLC30A9Q6PML9 568 aa12.89□□□□□ -0.35
HMGB1-202ENST00000339872 TMIGD1Q6UXZ0 262 aa12.89□□□□□ -0.35
HMGB1-202ENST00000339872 SUPV3L1Q8IYB8 786 aaKnown RBP eCLIP12.89□□□□□ -0.35
HMGB1-202ENST00000339872 PHACTR4Q8IZ21 702 aa12.89□□□□□ -0.35
HMGB1-202ENST00000339872 KRT78Q8N1N4 520 aa12.89□□□□□ -0.35
HMGB1-202ENST00000339872 OR13H1Q8NG92 308 aa12.89□□□□□ -0.35
HMGB1-202ENST00000339872 CCL4L1Q8NHW4 92 aa12.89□□□□□ -0.35
HMGB1-202ENST00000339872 RLN3Q8WXF3 142 aa12.89□□□□□ -0.35
HMGB1-202ENST00000339872 SNX19Q92543 992 aa12.89□□□□□ -0.35
HMGB1-202ENST00000339872 UBE2E3Q969T4 207 aa12.89□□□□□ -0.35
HMGB1-202ENST00000339872 PPM1MQ96MI6 270 aa12.89□□□□□ -0.35
HMGB1-202ENST00000339872 TMEM74Q96NL1 305 aa12.89□□□□□ -0.35
HMGB1-202ENST00000339872 OR52E6Q96RD3 313 aa12.89□□□□□ -0.35
HMGB1-202ENST00000339872 RAB11FIP5Q9BXF6 653 aa12.89□□□□□ -0.35
HMGB1-202ENST00000339872 TMEM168Q9H0V1 697 aa12.89□□□□□ -0.35
HMGB1-202ENST00000339872 WSB2Q9NYS7 404 aaPredicted RBP12.89□□□□□ -0.35
HMGB1-202ENST00000339872 HS3ST3A1Q9Y663 406 aa12.89□□□□□ -0.35
HMGB1-202ENST00000339872 CROCCQ5TZA2 2017 aa12.89□□□□□ -0.35
HMGB1-202ENST00000339872 FAM170BA6NMN3 283 aa12.89□□□□□ -0.35
HMGB1-202ENST00000339872 FOXE1O00358 373 aaPredicted RBP12.89□□□□□ -0.35
HMGB1-202ENST00000339872 TNFRSF10CO14798 259 aa12.89□□□□□ -0.35
HMGB1-202ENST00000339872 KCNH1O95259 989 aa12.89□□□□□ -0.35
HMGB1-202ENST00000339872 EML2O95834 649 aa12.89□□□□□ -0.35
HMGB1-202ENST00000339872 OXTRP30559 389 aa12.89□□□□□ -0.35
HMGB1-202ENST00000339872 PKLRP30613 574 aa12.89□□□□□ -0.35
HMGB1-202ENST00000339872 ACTR1BP42025 376 aa12.89□□□□□ -0.35
HMGB1-202ENST00000339872 ACTR1AP61163 376 aa12.89□□□□□ -0.35
HMGB1-202ENST00000339872 PHEXP78562 749 aa12.89□□□□□ -0.35
HMGB1-202ENST00000339872 FZD5Q13467 585 aa12.89□□□□□ -0.35
HMGB1-202ENST00000339872 ALG11Q2TAA5 492 aa12.89□□□□□ -0.35
HMGB1-202ENST00000339872 SPIN4Q56A73 249 aa12.89□□□□□ -0.35
HMGB1-202ENST00000339872 NANOGP8Q6NSW7 305 aa12.89□□□□□ -0.35
HMGB1-202ENST00000339872 DLEU7Q6UYE1 221 aa12.89□□□□□ -0.35
HMGB1-202ENST00000339872 LRRC74BQ6ZQY2 392 aa12.89□□□□□ -0.35
HMGB1-202ENST00000339872 SPATA24Q86W54 205 aa12.89□□□□□ -0.35
HMGB1-202ENST00000339872 FAM129CQ86XR2 697 aa12.89□□□□□ -0.35
HMGB1-202ENST00000339872 HID1Q8IV36 788 aa12.89□□□□□ -0.35
HMGB1-202ENST00000339872 FAM160A2Q8N612 972 aaPredicted RBP12.89□□□□□ -0.35
HMGB1-202ENST00000339872 NANOGQ9H9S0 305 aa12.89□□□□□ -0.35
HMGB1-202ENST00000339872 PPT2Q9UMR5 302 aa12.89□□□□□ -0.35
HMGB1-202ENST00000339872 ICKQ9UPZ9 632 aa12.89□□□□□ -0.35
HMGB1-202ENST00000339872 PLXND1Q9Y4D7 1925 aa12.88□□□□□ -0.35
HMGB1-202ENST00000339872 C15orf38-AP3S2A0A0A6YYH1 394 aa12.88□□□□□ -0.35
Retrieved 100 of 20,778 RNA–protein pairs in 40.7 ms