RNA–Protein interactions for RNA: ENST00000338963.6

NEDD4-201, Transcript of neural precursor cell expressed, developmentally down-regulated 4, E3 ubiquitin protein ligase, humanhuman

TSL 1 (best) BASIC

Gene NEDD4, Length 7,019 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NEDD4-201ENST00000338963 DPAGT1Q9H3H5 408 aa4.05□□□□□ -1.76
NEDD4-201ENST00000338963 GAL3ST2Q9H3Q3 398 aa4.05□□□□□ -1.76
NEDD4-201ENST00000338963 ASB7Q9H672 318 aa4.05□□□□□ -1.76
NEDD4-201ENST00000338963 SEBOXQ9HB31 216 aaPredicted RBP4.05□□□□□ -1.76
NEDD4-201ENST00000338963 EVA1BQ9NVM1 165 aa4.05□□□□□ -1.76
NEDD4-201ENST00000338963 ARHGAP28Q9P2N2 729 aa4.05□□□□□ -1.76
NEDD4-201ENST00000338963 ZC3H13Q5T200 1668 aaKnown RBP4.05□□□□□ -1.76
NEDD4-201ENST00000338963 A0A1W2PQ09 198 aa4.04□□□□□ -1.76
NEDD4-201ENST00000338963 TMEM218A2RU14 115 aa4.04□□□□□ -1.76
NEDD4-201ENST00000338963 FAM159BA6NKW6 160 aa4.04□□□□□ -1.76
NEDD4-201ENST00000338963 NEURL1BA8MQ27 555 aa4.04□□□□□ -1.76
NEDD4-201ENST00000338963 E9PI62 339 aa4.04□□□□□ -1.76
NEDD4-201ENST00000338963 C6orf229H3BNL8 230 aa4.04□□□□□ -1.76
NEDD4-201ENST00000338963 TMX2-CTNND1H3BSU7 103 aa4.04□□□□□ -1.76
NEDD4-201ENST00000338963 K7ERI5 159 aa4.04□□□□□ -1.76
NEDD4-201ENST00000338963 CSF1RP07333 972 aa4.04□□□□□ -1.76
NEDD4-201ENST00000338963 CBSLP0DN79 551 aa4.04□□□□□ -1.76
NEDD4-201ENST00000338963 CBSP35520 551 aa4.04□□□□□ -1.76
NEDD4-201ENST00000338963 MARCKSL1P49006 195 aa4.04□□□□□ -1.76
NEDD4-201ENST00000338963 NAPAP54920 295 aa4.04□□□□□ -1.76
NEDD4-201ENST00000338963 NCS1P62166 190 aa4.04□□□□□ -1.76
NEDD4-201ENST00000338963 MRPS5P82675 430 aaKnown RBP4.04□□□□□ -1.76
NEDD4-201ENST00000338963 NFKB2Q00653 900 aa4.04□□□□□ -1.76
NEDD4-201ENST00000338963 FGFBP1Q14512 234 aa4.04□□□□□ -1.76
NEDD4-201ENST00000338963 PEA15Q15121 130 aa4.04□□□□□ -1.76
NEDD4-201ENST00000338963 HLFQ16534 295 aa4.04□□□□□ -1.76
NEDD4-201ENST00000338963 C1orf94Q6P1W5 598 aa4.04□□□□□ -1.76
NEDD4-201ENST00000338963 NOTUMQ6P988 496 aa4.04□□□□□ -1.76
NEDD4-201ENST00000338963 BAIAP2L2Q6UXY1 529 aa4.04□□□□□ -1.76
NEDD4-201ENST00000338963 CLDN22Q8N7P3 220 aa4.04□□□□□ -1.76
NEDD4-201ENST00000338963 OR2T4Q8NH00 348 aa4.04□□□□□ -1.76
NEDD4-201ENST00000338963 HUS1BQ8NHY5 278 aa4.04□□□□□ -1.76
NEDD4-201ENST00000338963 BIRC7Q96CA5 298 aa4.04□□□□□ -1.76
NEDD4-201ENST00000338963 DIRAS2Q96HU8 199 aa4.04□□□□□ -1.76
NEDD4-201ENST00000338963 SFXN2Q96NB2 322 aa4.04□□□□□ -1.76
NEDD4-201ENST00000338963 MTERF1Q99551 399 aaKnown RBP4.04□□□□□ -1.76
NEDD4-201ENST00000338963 CRB3Q9BUF7 120 aa4.04□□□□□ -1.76
NEDD4-201ENST00000338963 SLC38A1Q9H2H9 487 aa4.04□□□□□ -1.76
NEDD4-201ENST00000338963 GPN1Q9HCN4 374 aaPredicted RBP4.04□□□□□ -1.76
NEDD4-201ENST00000338963 NLE1Q9NVX2 485 aaPredicted RBP4.04□□□□□ -1.76
NEDD4-201ENST00000338963 FAM118AQ9NWS6 357 aa4.04□□□□□ -1.76
NEDD4-201ENST00000338963 TBC1D24Q9ULP9 559 aa4.04□□□□□ -1.76
NEDD4-201ENST00000338963 PCYT1BQ9Y5K3 369 aaPredicted RBP4.04□□□□□ -1.76
NEDD4-201ENST00000338963 SPHKAPQ2M3C7 1700 aa4.04□□□□□ -1.76
NEDD4-201ENST00000338963 PTPRMP28827 1452 aa4.04□□□□□ -1.76
NEDD4-201ENST00000338963 E5RJQ4 531 aa4.04□□□□□ -1.76
NEDD4-201ENST00000338963 H7C4K7 107 aa4.04□□□□□ -1.76
NEDD4-201ENST00000338963 MEIS1O00470 390 aa4.04□□□□□ -1.76
NEDD4-201ENST00000338963 PPP6CO00743 305 aa4.04□□□□□ -1.76
NEDD4-201ENST00000338963 XYLBO75191 536 aa4.04□□□□□ -1.76
NEDD4-201ENST00000338963 EIF3GO75821 320 aaKnown RBP eCLIP4.04□□□□□ -1.76
NEDD4-201ENST00000338963 HEXAP06865 529 aa4.04□□□□□ -1.76
NEDD4-201ENST00000338963 UBBP0CG47 229 aa4.04□□□□□ -1.76
NEDD4-201ENST00000338963 UBCP0CG48 685 aaKnown RBP4.04□□□□□ -1.76
NEDD4-201ENST00000338963 PGAM1P18669 254 aa4.04□□□□□ -1.76
NEDD4-201ENST00000338963 ANXA7P20073 488 aaKnown RBP4.04□□□□□ -1.76
NEDD4-201ENST00000338963 FEN1P39748 380 aaKnown RBP4.04□□□□□ -1.76
NEDD4-201ENST00000338963 FCGRTP55899 365 aa4.04□□□□□ -1.76
NEDD4-201ENST00000338963 GMFBP60983 142 aa4.04□□□□□ -1.76
NEDD4-201ENST00000338963 SNRPD2P62316 118 aaKnown RBP4.04□□□□□ -1.76
NEDD4-201ENST00000338963 RPS27AP62979 156 aaKnown RBP4.04□□□□□ -1.76
NEDD4-201ENST00000338963 UBA52P62987 128 aaKnown RBP4.04□□□□□ -1.76
NEDD4-201ENST00000338963 RPS6KA2Q15349 733 aa4.04□□□□□ -1.76
NEDD4-201ENST00000338963 SF1Q15637 639 aaKnown RBP4.04□□□□□ -1.76
NEDD4-201ENST00000338963 PCID2Q5JVF3 399 aa4.04□□□□□ -1.76
NEDD4-201ENST00000338963 STRIP1Q5VSL9 837 aa4.04□□□□□ -1.76
NEDD4-201ENST00000338963 TRILQ7L0X0 811 aa4.04□□□□□ -1.76
NEDD4-201ENST00000338963 FAM71AQ8IYT1 594 aa4.04□□□□□ -1.76
NEDD4-201ENST00000338963 DNAJB8Q8NHS0 232 aa4.04□□□□□ -1.76
NEDD4-201ENST00000338963 CHTF18Q8WVB6 975 aa4.04□□□□□ -1.76
NEDD4-201ENST00000338963 RAB3CQ96E17 227 aa4.04□□□□□ -1.76
NEDD4-201ENST00000338963 KLHL5Q96PQ7 755 aa4.04□□□□□ -1.76
NEDD4-201ENST00000338963 METTL1Q9UBP6 276 aaKnown RBP4.04□□□□□ -1.76
NEDD4-201ENST00000338963 DHRS7Q9Y394 339 aa4.04□□□□□ -1.76
NEDD4-201ENST00000338963 GOLT1BQ9Y3E0 138 aa4.04□□□□□ -1.76
NEDD4-201ENST00000338963 OAS3Q9Y6K5 1087 aaKnown RBP4.04□□□□□ -1.76
NEDD4-201ENST00000338963 A0A1B0GV90 55 aa4.04□□□□□ -1.76
NEDD4-201ENST00000338963 OR14I1A6ND48 311 aa4.04□□□□□ -1.76
NEDD4-201ENST00000338963 SGK494L7N484 410 aa4.04□□□□□ -1.76
NEDD4-201ENST00000338963 PDHXO00330 501 aa4.04□□□□□ -1.76
NEDD4-201ENST00000338963 PGLSO95336 258 aa4.04□□□□□ -1.76
NEDD4-201ENST00000338963 CNOT4O95628 575 aaKnown RBP4.04□□□□□ -1.76
NEDD4-201ENST00000338963 ATP6V1B2P21281 511 aa4.04□□□□□ -1.76
NEDD4-201ENST00000338963 SLC6A4P31645 630 aa4.04□□□□□ -1.76
NEDD4-201ENST00000338963 NOS2P35228 1153 aa4.04□□□□□ -1.76
NEDD4-201ENST00000338963 GMPSP49915 693 aaPredicted RBP4.04□□□□□ -1.76
NEDD4-201ENST00000338963 RNF144AP50876 292 aaPredicted RBP4.04□□□□□ -1.76
NEDD4-201ENST00000338963 OPCMLQ14982 345 aa4.04□□□□□ -1.76
NEDD4-201ENST00000338963 MARCH8Q5T0T0 291 aa4.04□□□□□ -1.76
NEDD4-201ENST00000338963 HIST2H3PS2Q5TEC6 136 aa4.04□□□□□ -1.76
NEDD4-201ENST00000338963 NXNL2Q5VZ03 156 aa4.04□□□□□ -1.76
NEDD4-201ENST00000338963 MSANTD1Q6ZTZ1 278 aa4.04□□□□□ -1.76
NEDD4-201ENST00000338963 BRINP3Q76B58 766 aa4.04□□□□□ -1.76
NEDD4-201ENST00000338963 KDELC2Q7Z4H8 507 aa4.04□□□□□ -1.76
NEDD4-201ENST00000338963 EFCAB3Q8N7B9 438 aa4.04□□□□□ -1.76
NEDD4-201ENST00000338963 BEST4Q8NFU0 473 aa4.04□□□□□ -1.76
NEDD4-201ENST00000338963 SEMA6DQ8NFY4 1073 aa4.04□□□□□ -1.76
NEDD4-201ENST00000338963 SNIP1Q8TAD8 396 aaKnown RBP4.04□□□□□ -1.76
NEDD4-201ENST00000338963 SLC35B2Q8TB61 432 aa4.04□□□□□ -1.76
NEDD4-201ENST00000338963 CHURC1Q8WUH1 139 aa4.04□□□□□ -1.76
Retrieved 100 of 20,778 RNA–protein pairs in 32.5 ms