RNA–Protein interactions for RNA: ENST00000326004.4

HMGB1-201, Transcript of high mobility group box 1, humanhuman

TSL 3 BASIC

Gene HMGB1, Length 821 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1-201ENST00000326004 SETBP1Q9Y6X0 1596 aa2.99□□□□□ -1.93
HMGB1-201ENST00000326004 IL16Q14005 1332 aa2.98□□□□□ -1.93
HMGB1-201ENST00000326004 GRIN2BQ13224 1484 aa2.98□□□□□ -1.93
HMGB1-201ENST00000326004 ZCCHC6Q5VYS8 1495 aaKnown RBP2.98□□□□□ -1.93
HMGB1-201ENST00000326004 A0A087WW49 117 aa2.98□□□□□ -1.93
HMGB1-201ENST00000326004 PSMA7O14818 248 aa2.98□□□□□ -1.93
HMGB1-201ENST00000326004 IFIT3O14879 490 aaKnown RBP2.98□□□□□ -1.93
HMGB1-201ENST00000326004 KHDRBS3O75525 346 aaKnown RBP2.98□□□□□ -1.93
HMGB1-201ENST00000326004 C9P02748 559 aa2.98□□□□□ -1.93
HMGB1-201ENST00000326004 ZFYP08048 801 aaPredicted RBP2.98□□□□□ -1.93
HMGB1-201ENST00000326004 FAM58BPP0C7Q3 252 aa2.98□□□□□ -1.93
HMGB1-201ENST00000326004 CFC1BP0CG36 223 aa2.98□□□□□ -1.93
HMGB1-201ENST00000326004 CFC1P0CG37 223 aa2.98□□□□□ -1.93
HMGB1-201ENST00000326004 DARSP14868 501 aaKnown RBP2.98□□□□□ -1.93
HMGB1-201ENST00000326004 LHCGRP22888 699 aa2.98□□□□□ -1.93
HMGB1-201ENST00000326004 CD27P26842 260 aa2.98□□□□□ -1.93
HMGB1-201ENST00000326004 ALDH4A1P30038 563 aa2.98□□□□□ -1.93
HMGB1-201ENST00000326004 CETN2P41208 172 aa2.98□□□□□ -1.93
HMGB1-201ENST00000326004 CRKLP46109 303 aaKnown RBP2.98□□□□□ -1.93
HMGB1-201ENST00000326004 NR0B1P51843 470 aaKnown RBP2.98□□□□□ -1.93
HMGB1-201ENST00000326004 GSDMDP57764 484 aa2.98□□□□□ -1.93
HMGB1-201ENST00000326004 MYL7Q01449 175 aa2.98□□□□□ -1.93
HMGB1-201ENST00000326004 GCNT1Q02742 428 aa2.98□□□□□ -1.93
HMGB1-201ENST00000326004 CACNG1Q06432 222 aa2.98□□□□□ -1.93
HMGB1-201ENST00000326004 RASGEF1BQ0VAM2 473 aa2.98□□□□□ -1.93
HMGB1-201ENST00000326004 TNK1Q13470 666 aa2.98□□□□□ -1.93
HMGB1-201ENST00000326004 TUBB2AQ13885 445 aa2.98□□□□□ -1.93
HMGB1-201ENST00000326004 NONOQ15233 471 aaKnown RBP eCLIP2.98□□□□□ -1.93
HMGB1-201ENST00000326004 RBBP7Q16576 425 aa2.98□□□□□ -1.93
HMGB1-201ENST00000326004 CTU2Q2VPK5 515 aaKnown RBP2.98□□□□□ -1.93
HMGB1-201ENST00000326004 FFAR4Q5NUL3 377 aa2.98□□□□□ -1.93
HMGB1-201ENST00000326004 GFI1BQ5VTD9 330 aa2.98□□□□□ -1.93
HMGB1-201ENST00000326004 LYSMD4Q5XG99 296 aa2.98□□□□□ -1.93
HMGB1-201ENST00000326004 TXNRD3NBQ6F5E7 133 aa2.98□□□□□ -1.93
HMGB1-201ENST00000326004 ZNF449Q6P9G9 518 aa2.98□□□□□ -1.93
HMGB1-201ENST00000326004 FAM47EQ6ZV65 393 aa2.98□□□□□ -1.93
HMGB1-201ENST00000326004 OR8H3Q8N146 312 aa2.98□□□□□ -1.93
HMGB1-201ENST00000326004 TMEM178AQ8NBL3 297 aa2.98□□□□□ -1.93
HMGB1-201ENST00000326004 DDHD1Q8NEL9 900 aa2.98□□□□□ -1.93
HMGB1-201ENST00000326004 OR5AP2Q8NGF4 316 aa2.98□□□□□ -1.93
HMGB1-201ENST00000326004 MRGPRDQ8TDS7 321 aa2.98□□□□□ -1.93
HMGB1-201ENST00000326004 SLC26A7Q8TE54 656 aa2.98□□□□□ -1.93
HMGB1-201ENST00000326004 HEXDCQ8WVB3 486 aa2.98□□□□□ -1.93
HMGB1-201ENST00000326004 NR4A3Q92570 626 aa2.98□□□□□ -1.93
HMGB1-201ENST00000326004 P2RX5Q93086 422 aa2.98□□□□□ -1.93
HMGB1-201ENST00000326004 CENPTQ96BT3 561 aa2.98□□□□□ -1.93
HMGB1-201ENST00000326004 C4orf45Q96LM5 186 aa2.98□□□□□ -1.93
HMGB1-201ENST00000326004 LITAFQ99732 161 aa2.98□□□□□ -1.93
HMGB1-201ENST00000326004 ASCL2Q99929 193 aa2.98□□□□□ -1.93
HMGB1-201ENST00000326004 TUBB2BQ9BVA1 445 aa2.98□□□□□ -1.93
HMGB1-201ENST00000326004 SHARPINQ9H0F6 387 aa2.98□□□□□ -1.93
HMGB1-201ENST00000326004 SDCBP2Q9H190 292 aa2.98□□□□□ -1.93
HMGB1-201ENST00000326004 SNX25Q9H3E2 840 aa2.98□□□□□ -1.93
HMGB1-201ENST00000326004 ERAP1Q9NZ08 941 aa2.98□□□□□ -1.93
HMGB1-201ENST00000326004 R4GN57 208 aa2.98□□□□□ -1.93
HMGB1-201ENST00000326004 ABCC8Q09428 1581 aa2.98□□□□□ -1.93
HMGB1-201ENST00000326004 STRCQ7RTU9 1775 aa2.97□□□□□ -1.93
HMGB1-201ENST00000326004 ADCY10Q96PN6 1610 aa2.97□□□□□ -1.93
HMGB1-201ENST00000326004 PLB1Q6P1J6 1458 aa2.97□□□□□ -1.93
HMGB1-201ENST00000326004 RAD54L2Q9Y4B4 1467 aa2.97□□□□□ -1.93
HMGB1-201ENST00000326004 BCORL1Q5H9F3 1711 aa2.97□□□□□ -1.93
HMGB1-201ENST00000326004 GLI2P10070 1586 aa2.97□□□□□ -1.93
HMGB1-201ENST00000326004 PEG3Q9GZU2 1588 aa2.97□□□□□ -1.93
HMGB1-201ENST00000326004 C5orf52A6NGY3 159 aa2.97□□□□□ -1.93
HMGB1-201ENST00000326004 MSGN1A6NI15 193 aa2.97□□□□□ -1.93
HMGB1-201ENST00000326004 EXTL3O43909 919 aa2.97□□□□□ -1.93
HMGB1-201ENST00000326004 DDHD2O94830 711 aa2.97□□□□□ -1.93
HMGB1-201ENST00000326004 PLGP00747 810 aaPredicted RBP2.97□□□□□ -1.93
HMGB1-201ENST00000326004 IGLV1-44P01699 117 aa2.97□□□□□ -1.93
HMGB1-201ENST00000326004 VTNP04004 478 aa2.97□□□□□ -1.93
HMGB1-201ENST00000326004 RAF1P04049 648 aa2.97□□□□□ -1.93
HMGB1-201ENST00000326004 CEBPBP17676 345 aa2.97□□□□□ -1.93
HMGB1-201ENST00000326004 PTMSP20962 102 aa2.97□□□□□ -1.93
HMGB1-201ENST00000326004 KRT2P35908 639 aa2.97□□□□□ -1.93
HMGB1-201ENST00000326004 PRKCIP41743 596 aa2.97□□□□□ -1.93
HMGB1-201ENST00000326004 CDX1P47902 265 aaPredicted RBP2.97□□□□□ -1.93
HMGB1-201ENST00000326004 GMPSP49915 693 aaPredicted RBP2.97□□□□□ -1.93
HMGB1-201ENST00000326004 CRIP2P52943 208 aaPredicted RBP2.97□□□□□ -1.93
HMGB1-201ENST00000326004 C1QTNF8P60827 252 aa2.97□□□□□ -1.93
HMGB1-201ENST00000326004 SULT2A1Q06520 285 aa2.97□□□□□ -1.93
HMGB1-201ENST00000326004 SLC25A53Q5H9E4 307 aa2.97□□□□□ -1.93
HMGB1-201ENST00000326004 MPP7Q5T2T1 576 aa2.97□□□□□ -1.93
HMGB1-201ENST00000326004 SUSD4Q5VX71 490 aa2.97□□□□□ -1.93
HMGB1-201ENST00000326004 ADAM5Q6NVV9 412 aa2.97□□□□□ -1.93
HMGB1-201ENST00000326004 CTR9Q6PD62 1173 aa2.97□□□□□ -1.93
HMGB1-201ENST00000326004 C11orf88Q6PI97 169 aa2.97□□□□□ -1.93
HMGB1-201ENST00000326004 TMEM207Q6UWW9 146 aa2.97□□□□□ -1.93
HMGB1-201ENST00000326004 DBF4BQ8NFT6 615 aa2.97□□□□□ -1.93
HMGB1-201ENST00000326004 OR10G8Q8NGN5 311 aa2.97□□□□□ -1.93
HMGB1-201ENST00000326004 OR1L3Q8NH93 324 aa2.97□□□□□ -1.93
HMGB1-201ENST00000326004 CORO2AQ92828 525 aa2.97□□□□□ -1.93
HMGB1-201ENST00000326004 PYCR2Q96C36 320 aa2.97□□□□□ -1.93
HMGB1-201ENST00000326004 GMPPAQ96IJ6 420 aaPredicted RBP2.97□□□□□ -1.93
HMGB1-201ENST00000326004 AK8Q96MA6 479 aa2.97□□□□□ -1.93
HMGB1-201ENST00000326004 INTS14Q96SY0 518 aa2.97□□□□□ -1.93
HMGB1-201ENST00000326004 CDCA3Q99618 268 aaPredicted RBP2.97□□□□□ -1.93
HMGB1-201ENST00000326004 MLPHQ9BV36 600 aaPredicted RBP2.97□□□□□ -1.93
HMGB1-201ENST00000326004 THAP2Q9H0W7 228 aa2.97□□□□□ -1.93
HMGB1-201ENST00000326004 WDR13Q9H1Z4 485 aa2.97□□□□□ -1.93
HMGB1-201ENST00000326004 P2RY12Q9H244 342 aa2.97□□□□□ -1.93
Retrieved 100 of 20,778 RNA–protein pairs in 42.8 ms