RNA–Protein interactions for RNA: ENST00000324288.12

CIITA-201, Transcript of class II major histocompatibility complex transactivator, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene CIITA, Length 11,952 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CIITA-201ENST00000324288 DCLRE1AQ6PJP8 1040 aa7.72□□□□□ -1.17
CIITA-201ENST00000324288 SLC26A9Q7LBE3 791 aa7.72□□□□□ -1.17
CIITA-201ENST00000324288 ZNF557Q8N988 423 aaPredicted RBP7.72□□□□□ -1.17
CIITA-201ENST00000324288 ARHGEF4Q9NR80 690 aa7.72□□□□□ -1.17
CIITA-201ENST00000324288 TAS2R1Q9NYW7 299 aa7.72□□□□□ -1.17
CIITA-201ENST00000324288 PPRC1Q5VV67 1664 aaKnown RBP7.72□□□□□ -1.17
CIITA-201ENST00000324288 ZNF705FA8MVS1 300 aaPredicted RBP7.72□□□□□ -1.17
CIITA-201ENST00000324288 E7EQ34 232 aa7.72□□□□□ -1.17
CIITA-201ENST00000324288 TRAFD1O14545 582 aaPredicted RBP7.72□□□□□ -1.17
CIITA-201ENST00000324288 ZNF705DP0CH99 300 aaPredicted RBP7.72□□□□□ -1.17
CIITA-201ENST00000324288 ZNF705BP0CI00 300 aaPredicted RBP7.72□□□□□ -1.17
CIITA-201ENST00000324288 AQP11Q8NBQ7 271 aa7.72□□□□□ -1.17
CIITA-201ENST00000324288 TRIB2Q92519 343 aa7.72□□□□□ -1.17
CIITA-201ENST00000324288 SLC35G5Q96KT7 338 aa7.72□□□□□ -1.17
CIITA-201ENST00000324288 TAS2R3Q9NYW6 316 aa7.72□□□□□ -1.17
CIITA-201ENST00000324288 NWD1Q149M9 1564 aa7.72□□□□□ -1.17
CIITA-201ENST00000324288 ELK4P28324 431 aa7.72□□□□□ -1.17
CIITA-201ENST00000324288 OAZ1P54368 228 aa7.72□□□□□ -1.17
CIITA-201ENST00000324288 ERVK-21P61565 698 aa7.72□□□□□ -1.17
CIITA-201ENST00000324288 RPL19P84098 196 aaKnown RBP7.72□□□□□ -1.17
CIITA-201ENST00000324288 CREB5Q02930 508 aa7.72□□□□□ -1.17
CIITA-201ENST00000324288 SULT2A1Q06520 285 aa7.72□□□□□ -1.17
CIITA-201ENST00000324288 HEPACAMQ14CZ8 416 aa7.72□□□□□ -1.17
CIITA-201ENST00000324288 TMEM151AQ8N4L1 468 aa7.72□□□□□ -1.17
CIITA-201ENST00000324288 HERVK_113Q902F9 699 aa7.72□□□□□ -1.17
CIITA-201ENST00000324288 ERVK-19Q9WJR5 959 aa7.72□□□□□ -1.17
CIITA-201ENST00000324288 TXNL1O43396 289 aa7.71□□□□□ -1.17
CIITA-201ENST00000324288 CYB5AP00167 134 aa7.71□□□□□ -1.17
CIITA-201ENST00000324288 NFATC2Q13469 925 aa7.71□□□□□ -1.17
CIITA-201ENST00000324288 UBE2UQ5VVX9 321 aa7.71□□□□□ -1.17
CIITA-201ENST00000324288 MED27Q6P2C8 311 aa7.71□□□□□ -1.17
CIITA-201ENST00000324288 SYVN1Q86TM6 617 aa7.71□□□□□ -1.17
CIITA-201ENST00000324288 CD93Q9NPY3 652 aa7.71□□□□□ -1.17
CIITA-201ENST00000324288 PAQR5Q9NXK6 330 aaPredicted RBP7.71□□□□□ -1.17
CIITA-201ENST00000324288 DNMT3AQ9Y6K1 912 aaPredicted RBP7.71□□□□□ -1.17
CIITA-201ENST00000324288 PTPN6P29350 595 aa7.71□□□□□ -1.17
CIITA-201ENST00000324288 FSTL4Q6MZW2 842 aa7.71□□□□□ -1.17
CIITA-201ENST00000324288 KLHL6Q8WZ60 621 aa7.71□□□□□ -1.17
CIITA-201ENST00000324288 SRMSQ9H3Y6 488 aa7.71□□□□□ -1.17
CIITA-201ENST00000324288 SH2B3Q9UQQ2 575 aa7.71□□□□□ -1.17
CIITA-201ENST00000324288 PCDHGA12O60330 932 aa7.71□□□□□ -1.17
CIITA-201ENST00000324288 GADD45GO95257 159 aa7.71□□□□□ -1.17
CIITA-201ENST00000324288 CFIP05156 583 aa7.71□□□□□ -1.17
CIITA-201ENST00000324288 RPS17P08708 135 aaKnown RBP7.71□□□□□ -1.17
CIITA-201ENST00000324288 IDSP22304 550 aa7.71□□□□□ -1.17
CIITA-201ENST00000324288 HSD11B1P28845 292 aa7.71□□□□□ -1.17
CIITA-201ENST00000324288 TMEM220Q6QAJ8 160 aa7.71□□□□□ -1.17
CIITA-201ENST00000324288 CPNE9Q8IYJ1 553 aa7.71□□□□□ -1.17
CIITA-201ENST00000324288 RPL36Q9Y3U8 105 aaKnown RBP7.71□□□□□ -1.17
CIITA-201ENST00000324288 TNFRSF11AQ9Y6Q6 616 aaPredicted RBP7.71□□□□□ -1.17
CIITA-201ENST00000324288 MEGF6O75095 1541 aa7.71□□□□□ -1.17
CIITA-201ENST00000324288 PCNX1Q96RV3 2341 aa7.71□□□□□ -1.17
CIITA-201ENST00000324288 ZNF3P17036 446 aa7.71□□□□□ -1.17
CIITA-201ENST00000324288 GLUD2P49448 558 aa7.71□□□□□ -1.17
CIITA-201ENST00000324288 GPR68Q15743 365 aa7.71□□□□□ -1.17
CIITA-201ENST00000324288 LRRC66Q68CR7 880 aa7.71□□□□□ -1.17
CIITA-201ENST00000324288 DUS1LQ6P1R4 473 aaKnown RBP7.71□□□□□ -1.17
CIITA-201ENST00000324288 TMEM17Q86X19 198 aa7.71□□□□□ -1.17
CIITA-201ENST00000324288 DPEP3Q9H4B8 488 aa7.71□□□□□ -1.17
CIITA-201ENST00000324288 TM9SF3Q9HD45 589 aa7.71□□□□□ -1.17
CIITA-201ENST00000324288 FKBPLQ9UIM3 349 aa7.71□□□□□ -1.17
CIITA-201ENST00000324288 GNG8Q9UK08 70 aa7.71□□□□□ -1.17
CIITA-201ENST00000324288 PIK3C2BO00750 1634 aa7.71□□□□□ -1.18
CIITA-201ENST00000324288 RP2O75695 350 aa7.71□□□□□ -1.18
CIITA-201ENST00000324288 ENGP17813 658 aa7.71□□□□□ -1.18
CIITA-201ENST00000324288 MSX1P28360 303 aa7.71□□□□□ -1.18
CIITA-201ENST00000324288 RPIAP49247 311 aa7.71□□□□□ -1.18
CIITA-201ENST00000324288 CHIT1Q13231 466 aa7.71□□□□□ -1.18
CIITA-201ENST00000324288 NDUFA9Q16795 377 aa7.71□□□□□ -1.18
CIITA-201ENST00000324288 FAM214AQ32MH5 1076 aa7.71□□□□□ -1.18
CIITA-201ENST00000324288 XKR4Q5GH76 650 aa7.71□□□□□ -1.18
CIITA-201ENST00000324288 ATAD3CQ5T2N8 411 aa7.71□□□□□ -1.18
CIITA-201ENST00000324288 PRPF38BQ5VTL8 546 aaKnown RBP7.71□□□□□ -1.18
CIITA-201ENST00000324288 NIPA1Q7RTP0 329 aa7.71□□□□□ -1.18
CIITA-201ENST00000324288 HMGB4Q8WW32 186 aa7.71□□□□□ -1.18
CIITA-201ENST00000324288 NXPE2Q96DL1 559 aa7.71□□□□□ -1.18
CIITA-201ENST00000324288 MAELQ96JY0 434 aaKnown RBP7.71□□□□□ -1.18
CIITA-201ENST00000324288 UCK2Q9BZX2 261 aa7.71□□□□□ -1.18
CIITA-201ENST00000324288 TRPS1Q9UHF7 1281 aa7.71□□□□□ -1.18
CIITA-201ENST00000324288 B4DGG1 531 aa7.71□□□□□ -1.18
CIITA-201ENST00000324288 CLDN4O14493 209 aa7.71□□□□□ -1.18
CIITA-201ENST00000324288 CXCL11O14625 94 aa7.71□□□□□ -1.18
CIITA-201ENST00000324288 TACR2P21452 398 aa7.71□□□□□ -1.18
CIITA-201ENST00000324288 CMPK1P30085 196 aa7.71□□□□□ -1.18
CIITA-201ENST00000324288 C1QTNF8P60827 252 aa7.71□□□□□ -1.18
CIITA-201ENST00000324288 JAGN1Q8N5M9 183 aa7.71□□□□□ -1.18
CIITA-201ENST00000324288 DRAXINQ8NBI3 349 aaPredicted RBP7.71□□□□□ -1.18
CIITA-201ENST00000324288 WASH3PC4AMC7 463 aa7.71□□□□□ -1.18
CIITA-201ENST00000324288 SOX14O95416 240 aa7.71□□□□□ -1.18
CIITA-201ENST00000324288 IFNA21P01568 189 aa7.71□□□□□ -1.18
CIITA-201ENST00000324288 SPARCP09486 303 aa7.71□□□□□ -1.18
CIITA-201ENST00000324288 CCNOP22674 350 aa7.71□□□□□ -1.18
CIITA-201ENST00000324288 KHKP50053 298 aa7.71□□□□□ -1.18
CIITA-201ENST00000324288 MECP2P51608 486 aaKnown RBP7.71□□□□□ -1.18
CIITA-201ENST00000324288 SCARB2Q14108 478 aa7.71□□□□□ -1.18
CIITA-201ENST00000324288 NOMO1Q15155 1222 aa7.71□□□□□ -1.18
CIITA-201ENST00000324288 SMG8Q8ND04 991 aaKnown RBP7.71□□□□□ -1.18
CIITA-201ENST00000324288 KAZALD1Q96I82 304 aa7.71□□□□□ -1.18
CIITA-201ENST00000324288 PRICKLE1Q96MT3 831 aaPredicted RBP7.71□□□□□ -1.18
CIITA-201ENST00000324288 COL21A1Q96P44 957 aa7.71□□□□□ -1.18
Retrieved 100 of 20,778 RNA–protein pairs in 45.4 ms