RNA–Protein interactions for RNA: ENST00000308508.5

CSPG4-201, Transcript of chondroitin sulfate proteoglycan 4, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CSPG4, Length 8,290 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CSPG4-201ENST00000308508 CCR8P51685 355 aa13.53□□□□□ -0.24
CSPG4-201ENST00000308508 CAV3P56539 151 aa13.53□□□□□ -0.24
CSPG4-201ENST00000308508 TUSC3Q13454 348 aa13.53□□□□□ -0.24
CSPG4-201ENST00000308508 GALNT11Q8NCW6 608 aa13.53□□□□□ -0.24
CSPG4-201ENST00000308508 RPLP0P6Q8NHW5 317 aa13.53□□□□□ -0.24
CSPG4-201ENST00000308508 LCN9Q8WX39 176 aa13.53□□□□□ -0.24
CSPG4-201ENST00000308508 EPYCQ99645 322 aa13.53□□□□□ -0.24
CSPG4-201ENST00000308508 RAB11FIP5Q9BXF6 653 aa13.53□□□□□ -0.24
CSPG4-201ENST00000308508 TMEM185BQ9H7F4 350 aa13.53□□□□□ -0.24
CSPG4-201ENST00000308508 HTR1AP08908 422 aa13.53□□□□□ -0.24
CSPG4-201ENST00000308508 AOC1P19801 751 aa13.53□□□□□ -0.24
CSPG4-201ENST00000308508 CXCR1P25024 350 aa13.53□□□□□ -0.24
CSPG4-201ENST00000308508 FADDQ13158 208 aa13.53□□□□□ -0.24
CSPG4-201ENST00000308508 ITPK1Q13572 414 aa13.53□□□□□ -0.24
CSPG4-201ENST00000308508 RDH12Q96NR8 316 aa13.53□□□□□ -0.24
CSPG4-201ENST00000308508 PURBQ96QR8 312 aaKnown RBP13.53□□□□□ -0.24
CSPG4-201ENST00000308508 B3GNT5Q9BYG0 378 aa13.53□□□□□ -0.24
CSPG4-201ENST00000308508 SERINC1Q9NRX5 453 aa13.53□□□□□ -0.24
CSPG4-201ENST00000308508 RNF19AQ9NV58 838 aa13.53□□□□□ -0.24
CSPG4-201ENST00000308508 MAGED1Q9Y5V3 778 aaPredicted RBP13.53□□□□□ -0.24
CSPG4-201ENST00000308508 H7C417 338 aa13.53□□□□□ -0.24
CSPG4-201ENST00000308508 DPEP1P16444 411 aa13.53□□□□□ -0.24
CSPG4-201ENST00000308508 MATN1P21941 496 aa13.53□□□□□ -0.24
CSPG4-201ENST00000308508 CORO1AP31146 461 aaKnown RBP13.53□□□□□ -0.24
CSPG4-201ENST00000308508 GTF2IRD2BQ6EKJ0 949 aa13.53□□□□□ -0.24
CSPG4-201ENST00000308508 GTF2IRD2Q86UP8 949 aa13.53□□□□□ -0.24
CSPG4-201ENST00000308508 RBM12BQ8IXT5 1001 aaKnown RBP13.53□□□□□ -0.24
CSPG4-201ENST00000308508 HCAR2Q8TDS4 363 aa13.53□□□□□ -0.24
CSPG4-201ENST00000308508 OVCA2Q8WZ82 227 aa13.53□□□□□ -0.24
CSPG4-201ENST00000308508 RAD9AQ99638 391 aa13.53□□□□□ -0.24
CSPG4-201ENST00000308508 PKP2Q99959 881 aa13.53□□□□□ -0.24
CSPG4-201ENST00000308508 TAS2R9Q9NYW1 312 aa13.53□□□□□ -0.24
CSPG4-201ENST00000308508 EXOSC1Q9Y3B2 195 aaKnown RBP13.53□□□□□ -0.24
CSPG4-201ENST00000308508 PLATP00750 562 aa13.53□□□□□ -0.24
CSPG4-201ENST00000308508 JAM2P57087 298 aa13.53□□□□□ -0.24
CSPG4-201ENST00000308508 CTC1Q2NKJ3 1217 aa13.53□□□□□ -0.24
CSPG4-201ENST00000308508 HGSNATQ68CP4 663 aa13.53□□□□□ -0.24
CSPG4-201ENST00000308508 MBOAT1Q6ZNC8 495 aa13.53□□□□□ -0.24
CSPG4-201ENST00000308508 KLHL15Q96M94 604 aa13.53□□□□□ -0.24
CSPG4-201ENST00000308508 CGREF1Q99674 301 aa13.53□□□□□ -0.24
CSPG4-201ENST00000308508 NKX1-2Q9UD57 310 aaPredicted RBP13.53□□□□□ -0.24
CSPG4-201ENST00000308508 GLS2Q9UI32 602 aa13.53□□□□□ -0.24
CSPG4-201ENST00000308508 F5H0A9 414 aaPredicted RBP13.52□□□□□ -0.24
CSPG4-201ENST00000308508 IFNA4P05014 189 aa13.52□□□□□ -0.24
CSPG4-201ENST00000308508 CDH11P55287 796 aa13.52□□□□□ -0.24
CSPG4-201ENST00000308508 ABHD13Q7L211 337 aa13.52□□□□□ -0.24
CSPG4-201ENST00000308508 MRPS30Q9NP92 439 aaKnown RBP13.52□□□□□ -0.24
CSPG4-201ENST00000308508 ERVK-19Q9WJR5 959 aa13.52□□□□□ -0.24
CSPG4-201ENST00000308508 A8MV72 311 aaPredicted RBP13.52□□□□□ -0.24
CSPG4-201ENST00000308508 NT5C1B-RDH14C9J2C7 533 aa13.52□□□□□ -0.24
CSPG4-201ENST00000308508 XRCC1P18887 633 aaPredicted RBP13.52□□□□□ -0.24
CSPG4-201ENST00000308508 EFNA1P20827 205 aaPredicted RBP13.52□□□□□ -0.24
CSPG4-201ENST00000308508 UQCRC1P31930 480 aa13.52□□□□□ -0.24
CSPG4-201ENST00000308508 SAV1Q9H4B6 383 aaPredicted RBP13.52□□□□□ -0.24
CSPG4-201ENST00000308508 SMAD9O15198 467 aaKnown RBP13.52□□□□□ -0.25
CSPG4-201ENST00000308508 APOC3P02656 99 aa13.52□□□□□ -0.25
CSPG4-201ENST00000308508 BCKDHAP12694 445 aa13.52□□□□□ -0.25
CSPG4-201ENST00000308508 PRKCHP24723 683 aa13.52□□□□□ -0.25
CSPG4-201ENST00000308508 C3orf33Q6P1S2 294 aa13.52□□□□□ -0.25
CSPG4-201ENST00000308508 ERMP1Q7Z2K6 904 aa13.52□□□□□ -0.25
CSPG4-201ENST00000308508 FAM84AQ96KN4 292 aa13.52□□□□□ -0.25
CSPG4-201ENST00000308508 MAGEH1Q9H213 219 aa13.52□□□□□ -0.25
CSPG4-201ENST00000308508 CNTN3Q9P232 1028 aa13.52□□□□□ -0.25
CSPG4-201ENST00000308508 NRIP1P48552 1158 aa13.52□□□□□ -0.25
CSPG4-201ENST00000308508 HNRNPA0Q13151 305 aaKnown RBP13.52□□□□□ -0.25
CSPG4-201ENST00000308508 ZNF367Q7RTV3 350 aa13.52□□□□□ -0.25
CSPG4-201ENST00000308508 OR5T2Q8NGG2 359 aa13.52□□□□□ -0.25
CSPG4-201ENST00000308508 GRHL3Q8TE85 626 aa13.52□□□□□ -0.25
CSPG4-201ENST00000308508 TCTEX1D2Q8WW35 142 aa13.52□□□□□ -0.25
CSPG4-201ENST00000308508 VPS29Q9UBQ0 182 aa13.52□□□□□ -0.25
CSPG4-201ENST00000308508 ERVK-11Q9UQG0 969 aa13.52□□□□□ -0.25
CSPG4-201ENST00000308508 HTR3EA5X5Y0 456 aa13.52□□□□□ -0.25
CSPG4-201ENST00000308508 GABRDO14764 452 aa13.52□□□□□ -0.25
CSPG4-201ENST00000308508 CILPO75339 1184 aa13.52□□□□□ -0.25
CSPG4-201ENST00000308508 XKR5Q6UX68 686 aa13.52□□□□□ -0.25
CSPG4-201ENST00000308508 ZCCHC10Q8TBK6 192 aa13.52□□□□□ -0.25
CSPG4-201ENST00000308508 SLC22A17Q8WUG5 538 aa13.52□□□□□ -0.25
CSPG4-201ENST00000308508 SMARCD2Q92925 531 aa13.52□□□□□ -0.25
CSPG4-201ENST00000308508 ARL5AQ9Y689 179 aa13.52□□□□□ -0.25
CSPG4-201ENST00000308508 COL1A2P08123 1366 aa13.52□□□□□ -0.25
CSPG4-201ENST00000308508 FOXN2P32314 431 aa13.52□□□□□ -0.25
CSPG4-201ENST00000308508 CDKN2CP42773 168 aa13.52□□□□□ -0.25
CSPG4-201ENST00000308508 CLTCQ00610 1675 aaKnown RBP13.52□□□□□ -0.25
CSPG4-201ENST00000308508 DUOXA1Q1HG43 343 aa13.52□□□□□ -0.25
CSPG4-201ENST00000308508 KIAA0930Q6ICG6 404 aaPredicted RBP13.52□□□□□ -0.25
CSPG4-201ENST00000308508 DPF3Q92784 378 aa13.52□□□□□ -0.25
CSPG4-201ENST00000308508 SCRN2Q96FV2 425 aa13.52□□□□□ -0.25
CSPG4-201ENST00000308508 PTPN18Q99952 460 aa13.52□□□□□ -0.25
CSPG4-201ENST00000308508 WDR18Q9BV38 432 aa13.52□□□□□ -0.25
CSPG4-201ENST00000308508 SALL3Q9BXA9 1300 aa13.52□□□□□ -0.25
CSPG4-201ENST00000308508 RPF2Q9H7B2 306 aaKnown RBP13.52□□□□□ -0.25
CSPG4-201ENST00000308508 ZBTB26Q9HCK0 441 aa13.52□□□□□ -0.25
CSPG4-201ENST00000308508 PARPBPQ9NWS1 579 aa13.52□□□□□ -0.25
CSPG4-201ENST00000308508 FLRT2O43155 660 aa13.51□□□□□ -0.25
CSPG4-201ENST00000308508 EPHX2P34913 555 aa13.51□□□□□ -0.25
CSPG4-201ENST00000308508 RBMXP38159 391 aaKnown RBP13.51□□□□□ -0.25
CSPG4-201ENST00000308508 CYP1B1Q16678 543 aa13.51□□□□□ -0.25
CSPG4-201ENST00000308508 BEND4Q6ZU67 534 aa13.51□□□□□ -0.25
CSPG4-201ENST00000308508 TMCO2Q7Z6W1 182 aaPredicted RBP13.51□□□□□ -0.25
CSPG4-201ENST00000308508 CPA6Q8N4T0 437 aa13.51□□□□□ -0.25
Retrieved 100 of 20,778 RNA–protein pairs in 29.3 ms