RNA–Protein interactions for RNA: ENST00000297261.6

SHH-201, Transcript of sonic hedgehog, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SHH, Length 4,454 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHH-201ENST00000297261 AMIGO1Q86WK6 493 aa14.95□□□□□ -0.02
SHH-201ENST00000297261 COL21A1Q96P44 957 aa14.95□□□□□ -0.02
SHH-201ENST00000297261 MAGEH1Q9H213 219 aa14.95□□□□□ -0.02
SHH-201ENST00000297261 ARMC1Q9NVT9 282 aa14.95□□□□□ -0.02
SHH-201ENST00000297261 MBD2Q9UBB5 411 aa14.95□□□□□ -0.02
SHH-201ENST00000297261 ZNF451Q9Y4E5 1061 aa14.95□□□□□ -0.02
SHH-201ENST00000297261 ZCWPW2A0A1B0GU75 182 aa14.95□□□□□ -0.02
SHH-201ENST00000297261 A0A1W2PRG6 482 aa14.95□□□□□ -0.02
SHH-201ENST00000297261 SLITRK5O94991 958 aa14.95□□□□□ -0.02
SHH-201ENST00000297261 ACVRL1P37023 503 aa14.95□□□□□ -0.02
SHH-201ENST00000297261 C2orf80Q0P641 193 aa14.95□□□□□ -0.02
SHH-201ENST00000297261 SCAPQ12770 1279 aa14.95□□□□□ -0.02
SHH-201ENST00000297261 ZNF697Q5TEC3 545 aa14.95□□□□□ -0.02
SHH-201ENST00000297261 ZBTB2Q8N680 514 aa14.95□□□□□ -0.02
SHH-201ENST00000297261 TP63Q9H3D4 680 aaPredicted RBP14.95□□□□□ -0.02
SHH-201ENST00000297261 WDR6Q9NNW5 1121 aaKnown RBP14.95□□□□□ -0.02
SHH-201ENST00000297261 MTMR10Q9NXD2 777 aa14.95□□□□□ -0.02
SHH-201ENST00000297261 GMPR2Q9P2T1 348 aaKnown RBP14.95□□□□□ -0.02
SHH-201ENST00000297261 CLCA3PQ9Y6N3 262 aa14.95□□□□□ -0.02
SHH-201ENST00000297261 KHDRBS3O75525 346 aaKnown RBP14.94□□□□□ -0.02
SHH-201ENST00000297261 HSD17B1P14061 328 aa14.94□□□□□ -0.02
SHH-201ENST00000297261 HTR1EP28566 365 aa14.94□□□□□ -0.02
SHH-201ENST00000297261 CSTF2P33240 577 aaKnown RBP eCLIP14.94□□□□□ -0.02
SHH-201ENST00000297261 ATP4BP51164 291 aa14.94□□□□□ -0.02
SHH-201ENST00000297261 BLOC1S3Q6QNY0 202 aa14.94□□□□□ -0.02
SHH-201ENST00000297261 CERS6Q6ZMG9 384 aa14.94□□□□□ -0.02
SHH-201ENST00000297261 SERPINA9Q86WD7 417 aa14.94□□□□□ -0.02
SHH-201ENST00000297261 FRS2Q8WU20 508 aa14.94□□□□□ -0.02
SHH-201ENST00000297261 ZNF607Q96SK3 696 aa14.94□□□□□ -0.02
SHH-201ENST00000297261 RNF11Q9Y3C5 154 aa14.94□□□□□ -0.02
SHH-201ENST00000297261 SH3BP2P78314 561 aa14.94□□□□□ -0.02
SHH-201ENST00000297261 TMPRSS11BQ86T26 416 aa14.94□□□□□ -0.02
SHH-201ENST00000297261 IGSF21Q96ID5 467 aa14.94□□□□□ -0.02
SHH-201ENST00000297261 HCSTQ9UBK5 93 aa14.94□□□□□ -0.02
SHH-201ENST00000297261 GSAPA4D1B5 854 aa14.94□□□□□ -0.02
SHH-201ENST00000297261 PITPNM1O00562 1244 aa14.94□□□□□ -0.02
SHH-201ENST00000297261 ZNF26P17031 533 aaPredicted RBP14.94□□□□□ -0.02
SHH-201ENST00000297261 HSF2Q03933 536 aa14.94□□□□□ -0.02
SHH-201ENST00000297261 ST3GAL4Q11206 333 aa14.94□□□□□ -0.02
SHH-201ENST00000297261 FBXO43Q4G163 708 aa14.94□□□□□ -0.02
SHH-201ENST00000297261 ZNF613Q6PF04 617 aa14.94□□□□□ -0.02
SHH-201ENST00000297261 RBM23Q86U06 439 aaKnown RBP14.94□□□□□ -0.02
SHH-201ENST00000297261 PSD4Q8NDX1 1056 aa14.94□□□□□ -0.02
SHH-201ENST00000297261 OR52L1Q8NGH7 329 aa14.94□□□□□ -0.02
SHH-201ENST00000297261 ARNTL2Q8WYA1 636 aa14.94□□□□□ -0.02
SHH-201ENST00000297261 RTP4Q96DX8 246 aa14.94□□□□□ -0.02
SHH-201ENST00000297261 OR2B2Q9GZK3 357 aa14.94□□□□□ -0.02
SHH-201ENST00000297261 POLR2J3Q9H1A7 115 aaKnown RBP14.94□□□□□ -0.02
SHH-201ENST00000297261 C11orf49Q9H6J7 331 aa14.94□□□□□ -0.02
SHH-201ENST00000297261 NME7Q9Y5B8 376 aa14.94□□□□□ -0.02
SHH-201ENST00000297261 PSME4Q14997 1843 aa14.94□□□□□ -0.02
SHH-201ENST00000297261 FAM155AB1AL88 458 aaPredicted RBP14.94□□□□□ -0.02
SHH-201ENST00000297261 MPZL2O60487 215 aa14.94□□□□□ -0.02
SHH-201ENST00000297261 CCNDBP1O95273 360 aa14.94□□□□□ -0.02
SHH-201ENST00000297261 RPS3P23396 243 aaKnown RBP eCLIP14.94□□□□□ -0.02
SHH-201ENST00000297261 SEMG2Q02383 582 aa14.94□□□□□ -0.02
SHH-201ENST00000297261 CSTF1Q05048 431 aaKnown RBP14.94□□□□□ -0.02
SHH-201ENST00000297261 MGAT3Q09327 533 aa14.94□□□□□ -0.02
SHH-201ENST00000297261 MTAPQ13126 283 aa14.94□□□□□ -0.02
SHH-201ENST00000297261 ACOX1Q15067 660 aa14.94□□□□□ -0.02
SHH-201ENST00000297261 BTBD16Q32M84 506 aa14.94□□□□□ -0.02
SHH-201ENST00000297261 TPGS2Q68CL5 300 aa14.94□□□□□ -0.02
SHH-201ENST00000297261 ZNF461Q8TAF7 563 aa14.94□□□□□ -0.02
SHH-201ENST00000297261 C9orf43Q8TAL5 461 aaPredicted RBP14.94□□□□□ -0.02
SHH-201ENST00000297261 KHSRPQ92945 711 aaKnown RBP eCLIP14.94□□□□□ -0.02
SHH-201ENST00000297261 RANBP9Q96S59 729 aa14.94□□□□□ -0.02
SHH-201ENST00000297261 NSUN3Q9H649 340 aaKnown RBP14.94□□□□□ -0.02
SHH-201ENST00000297261 ABHD14A-ACY1A0A1B0GW23 586 aa14.93□□□□□ -0.02
SHH-201ENST00000297261 KPNA3O00505 521 aaPredicted RBP14.93□□□□□ -0.02
SHH-201ENST00000297261 MITFO75030 526 aaPredicted RBP14.93□□□□□ -0.02
SHH-201ENST00000297261 ATF6P18850 670 aa14.93□□□□□ -0.02
SHH-201ENST00000297261 DNAJB1P25685 340 aa14.93□□□□□ -0.02
SHH-201ENST00000297261 PTGER3P43115 390 aa14.93□□□□□ -0.02
SHH-201ENST00000297261 MAB21L1Q13394 359 aa14.93□□□□□ -0.02
SHH-201ENST00000297261 PM20D1Q6GTS8 502 aa14.93□□□□□ -0.02
SHH-201ENST00000297261 TMCO2Q7Z6W1 182 aaPredicted RBP14.93□□□□□ -0.02
SHH-201ENST00000297261 SLC37A3Q8NCC5 494 aa14.93□□□□□ -0.02
SHH-201ENST00000297261 NDNFQ8TB73 568 aa14.93□□□□□ -0.02
SHH-201ENST00000297261 MZB1Q8WU39 189 aa14.93□□□□□ -0.02
SHH-201ENST00000297261 KIAA1191Q96A73 305 aa14.93□□□□□ -0.02
SHH-201ENST00000297261 PLD4Q96BZ4 506 aa14.93□□□□□ -0.02
SHH-201ENST00000297261 MRPL48Q96GC5 212 aaKnown RBP14.93□□□□□ -0.02
SHH-201ENST00000297261 FCRL4Q96PJ5 515 aa14.93□□□□□ -0.02
SHH-201ENST00000297261 ASPNQ9BXN1 380 aa14.93□□□□□ -0.02
SHH-201ENST00000297261 COQ3Q9NZJ6 369 aa14.93□□□□□ -0.02
SHH-201ENST00000297261 PCDH10Q9P2E7 1040 aa14.93□□□□□ -0.02
SHH-201ENST00000297261 DPP7Q9UHL4 492 aa14.93□□□□□ -0.02
SHH-201ENST00000297261 CHURC1-FNTBB4DL54 471 aa14.93□□□□□ -0.02
SHH-201ENST00000297261 C8AP07357 584 aa14.93□□□□□ -0.02
SHH-201ENST00000297261 MATN1P21941 496 aa14.93□□□□□ -0.02
SHH-201ENST00000297261 ENPP6Q6UWR7 440 aa14.93□□□□□ -0.02
SHH-201ENST00000297261 LIN28BQ6ZN17 250 aaKnown RBP eCLIP14.93□□□□□ -0.02
SHH-201ENST00000297261 TIGD4Q8IY51 512 aa14.93□□□□□ -0.02
SHH-201ENST00000297261 ADGRG5Q8IZF4 528 aa14.93□□□□□ -0.02
SHH-201ENST00000297261 CLDN19Q8N6F1 224 aa14.93□□□□□ -0.02
SHH-201ENST00000297261 ACVR1CQ8NER5 493 aa14.93□□□□□ -0.02
SHH-201ENST00000297261 TBC1D15Q8TC07 691 aa14.93□□□□□ -0.02
SHH-201ENST00000297261 WACQ9BTA9 647 aa14.93□□□□□ -0.02
SHH-201ENST00000297261 SLITRK2Q9H156 845 aa14.93□□□□□ -0.02
SHH-201ENST00000297261 ATP13A3Q9H7F0 1226 aa14.93□□□□□ -0.02
Retrieved 100 of 20,778 RNA–protein pairs in 47.5 ms