RNA–Protein interactions for RNA: ENST00000272322.8

VPS54-201, Transcript of VPS54, GARP complex subunit, humanhuman

APPRIS P3 TSL 5 BASIC

Gene VPS54, Length 3,463 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS54-201ENST00000272322 SPCS2Q15005 226 aa16.09■□□□□ 0.17
VPS54-201ENST00000272322 ZNF284Q2VY69 593 aa16.09■□□□□ 0.17
VPS54-201ENST00000272322 ZNF773Q6PK81 442 aa16.09■□□□□ 0.17
VPS54-201ENST00000272322 USP51Q70EK9 711 aa16.09■□□□□ 0.17
VPS54-201ENST00000272322 RNF217Q8TC41 542 aa16.09■□□□□ 0.17
VPS54-201ENST00000272322 NEIL2Q969S2 332 aa16.09■□□□□ 0.17
VPS54-201ENST00000272322 FUNDC2Q9BWH2 189 aa16.09■□□□□ 0.17
VPS54-201ENST00000272322 GORASP2Q9H8Y8 452 aa16.09■□□□□ 0.17
VPS54-201ENST00000272322 TPT1P8Q9HAU6 139 aa16.09■□□□□ 0.17
VPS54-201ENST00000272322 CXXC1Q9P0U4 656 aaPredicted RBP16.09■□□□□ 0.17
VPS54-201ENST00000272322 C3orf18Q9UK00 162 aa16.09■□□□□ 0.17
VPS54-201ENST00000272322 SH3GLB1Q9Y371 365 aa16.09■□□□□ 0.17
VPS54-201ENST00000272322 ANAPC1Q9H1A4 1944 aa16.09■□□□□ 0.17
VPS54-201ENST00000272322 CXCL10P02778 98 aa16.09■□□□□ 0.17
VPS54-201ENST00000272322 MAPK8P45983 427 aa16.09■□□□□ 0.17
VPS54-201ENST00000272322 IDH2P48735 452 aaKnown RBP16.09■□□□□ 0.17
VPS54-201ENST00000272322 BMXP51813 675 aa16.09■□□□□ 0.17
VPS54-201ENST00000272322 SYT16Q17RD7 645 aa16.09■□□□□ 0.17
VPS54-201ENST00000272322 DUS1LQ6P1R4 473 aaKnown RBP16.09■□□□□ 0.17
VPS54-201ENST00000272322 C11orf96Q7Z7L8 435 aa16.09■□□□□ 0.17
VPS54-201ENST00000272322 GLB1L3Q8NCI6 653 aaPredicted RBP16.09■□□□□ 0.17
VPS54-201ENST00000272322 TANKQ92844 425 aa16.09■□□□□ 0.17
VPS54-201ENST00000272322 CIDECQ96AQ7 238 aaPredicted RBP16.09■□□□□ 0.17
VPS54-201ENST00000272322 KCNC2Q96PR1 638 aa16.09■□□□□ 0.17
VPS54-201ENST00000272322 RBM4BQ9BQ04 359 aaKnown RBP16.09■□□□□ 0.17
VPS54-201ENST00000272322 RBM4Q9BWF3 364 aaKnown RBP16.09■□□□□ 0.17
VPS54-201ENST00000272322 KCNH6Q9H252 994 aa16.09■□□□□ 0.17
VPS54-201ENST00000272322 TIMMDC1Q9NPL8 285 aa16.09■□□□□ 0.17
VPS54-201ENST00000272322 FZD4Q9ULV1 537 aa16.09■□□□□ 0.17
VPS54-201ENST00000272322 TMEM98Q9Y2Y6 226 aa16.09■□□□□ 0.17
VPS54-201ENST00000272322 GABRR3A8MPY1 467 aa16.08■□□□□ 0.16
VPS54-201ENST00000272322 RTCAO00442 366 aaKnown RBP16.08■□□□□ 0.16
VPS54-201ENST00000272322 PCDH7O60245 1069 aa16.08■□□□□ 0.16
VPS54-201ENST00000272322 SCELO95171 688 aa16.08■□□□□ 0.16
VPS54-201ENST00000272322 ATXN8OSP0DMR3 200 aa16.08■□□□□ 0.16
VPS54-201ENST00000272322 CD9P21926 228 aa16.08■□□□□ 0.16
VPS54-201ENST00000272322 VBP1P61758 197 aa16.08■□□□□ 0.16
VPS54-201ENST00000272322 PPP2R2BQ00005 443 aa16.08■□□□□ 0.16
VPS54-201ENST00000272322 LRRC74AQ0VAA2 488 aa16.08■□□□□ 0.16
VPS54-201ENST00000272322 NFATC3Q12968 1075 aa16.08■□□□□ 0.16
VPS54-201ENST00000272322 DPY19L1Q2PZI1 675 aa16.08■□□□□ 0.16
VPS54-201ENST00000272322 XAF1Q6GPH4 301 aa16.08■□□□□ 0.16
VPS54-201ENST00000272322 AHSA2Q719I0 299 aa16.08■□□□□ 0.16
VPS54-201ENST00000272322 ADIPOR2Q86V24 386 aa16.08■□□□□ 0.16
VPS54-201ENST00000272322 NAGSQ8N159 534 aa16.08■□□□□ 0.16
VPS54-201ENST00000272322 HUS1BQ8NHY5 278 aa16.08■□□□□ 0.16
VPS54-201ENST00000272322 GLMNQ92990 594 aa16.08■□□□□ 0.16
VPS54-201ENST00000272322 OTUB1Q96FW1 271 aaPredicted RBP16.08■□□□□ 0.16
VPS54-201ENST00000272322 NODALQ96S42 347 aa16.08■□□□□ 0.16
VPS54-201ENST00000272322 PLXNA4Q9HCM2 1894 aa16.08■□□□□ 0.16
VPS54-201ENST00000272322 DYTNA2CJ06 578 aa16.08■□□□□ 0.16
VPS54-201ENST00000272322 LATO43561 262 aa16.08■□□□□ 0.16
VPS54-201ENST00000272322 ERN1O75460 977 aaKnown RBP16.08■□□□□ 0.16
VPS54-201ENST00000272322 NPPAP01160 153 aa16.08■□□□□ 0.16
VPS54-201ENST00000272322 SERPIND1P05546 499 aa16.08■□□□□ 0.16
VPS54-201ENST00000272322 EPCAMP16422 314 aa16.08■□□□□ 0.16
VPS54-201ENST00000272322 RPS26P62854 115 aaKnown RBP16.08■□□□□ 0.16
VPS54-201ENST00000272322 TMEM115Q12893 351 aaPredicted RBP16.08■□□□□ 0.16
VPS54-201ENST00000272322 LAIR1Q6GTX8 287 aa16.08■□□□□ 0.16
VPS54-201ENST00000272322 SLC15A4Q8N697 577 aa16.08■□□□□ 0.16
VPS54-201ENST00000272322 ZNF540Q8NDQ6 660 aa16.08■□□□□ 0.16
VPS54-201ENST00000272322 RPL3LQ92901 407 aaKnown RBP16.08■□□□□ 0.16
VPS54-201ENST00000272322 HEPHQ9BQS7 1158 aa16.08■□□□□ 0.16
VPS54-201ENST00000272322 SELENONQ9NZV5 590 aa16.08■□□□□ 0.16
VPS54-201ENST00000272322 GMPPBQ9Y5P6 360 aa16.08■□□□□ 0.16
VPS54-201ENST00000272322 BOLA2-SMG1P6H3BVE0 249 aa16.07■□□□□ 0.16
VPS54-201ENST00000272322 SH3BP5O60239 455 aa16.07■□□□□ 0.16
VPS54-201ENST00000272322 RHOP08100 348 aa16.07■□□□□ 0.16
VPS54-201ENST00000272322 ETFAP13804 333 aa16.07■□□□□ 0.16
VPS54-201ENST00000272322 LAG3P18627 525 aa16.07■□□□□ 0.16
VPS54-201ENST00000272322 PSMA3P25788 255 aa16.07■□□□□ 0.16
VPS54-201ENST00000272322 HTR1BP28222 390 aa16.07■□□□□ 0.16
VPS54-201ENST00000272322 IRS1P35568 1242 aa16.07■□□□□ 0.16
VPS54-201ENST00000272322 DAPP51397 102 aa16.07■□□□□ 0.16
VPS54-201ENST00000272322 SH3BGRP55822 239 aaPredicted RBP16.07■□□□□ 0.16
VPS54-201ENST00000272322 LAIR2Q6ISS4 152 aa16.07■□□□□ 0.16
VPS54-201ENST00000272322 GPR149Q86SP6 731 aa16.07■□□□□ 0.16
VPS54-201ENST00000272322 PSD4Q8NDX1 1056 aa16.07■□□□□ 0.16
VPS54-201ENST00000272322 SIRT5Q9NXA8 310 aa16.07■□□□□ 0.16
VPS54-201ENST00000272322 CKAP5Q14008 2032 aa16.07■□□□□ 0.16
VPS54-201ENST00000272322 CCDC88CQ9P219 2028 aa16.07■□□□□ 0.16
VPS54-201ENST00000272322 SLC1A7O00341 560 aa16.07■□□□□ 0.16
VPS54-201ENST00000272322 MMP20O60882 483 aa16.07■□□□□ 0.16
VPS54-201ENST00000272322 OLFM2O95897 454 aa16.07■□□□□ 0.16
VPS54-201ENST00000272322 MAGP20916 626 aa16.07■□□□□ 0.16
VPS54-201ENST00000272322 ARHGDIAP52565 204 aa16.07■□□□□ 0.16
VPS54-201ENST00000272322 RAD23AP54725 363 aa16.07■□□□□ 0.16
VPS54-201ENST00000272322 C21orf59P57076 290 aa16.07■□□□□ 0.16
VPS54-201ENST00000272322 MAPK11Q15759 364 aa16.07■□□□□ 0.16
VPS54-201ENST00000272322 COX20Q5RI15 118 aa16.07■□□□□ 0.16
VPS54-201ENST00000272322 LYPLAL1Q5VWZ2 237 aa16.07■□□□□ 0.16
VPS54-201ENST00000272322 NLGN4XQ8N0W4 816 aa16.07■□□□□ 0.16
VPS54-201ENST00000272322 NELL1Q92832 810 aa16.07■□□□□ 0.16
VPS54-201ENST00000272322 DUSP26Q9BV47 211 aa16.07■□□□□ 0.16
VPS54-201ENST00000272322 RECQL5O94762 991 aaPredicted RBP16.07■□□□□ 0.16
VPS54-201ENST00000272322 TIMP2P16035 220 aa16.07■□□□□ 0.16
VPS54-201ENST00000272322 KDELR2P33947 212 aa16.07■□□□□ 0.16
VPS54-201ENST00000272322 MASP1P48740 699 aa16.07■□□□□ 0.16
VPS54-201ENST00000272322 ALDH9A1P49189 494 aa16.07■□□□□ 0.16
VPS54-201ENST00000272322 POLR2LP62875 67 aaKnown RBP16.07■□□□□ 0.16
Retrieved 100 of 20,778 RNA–protein pairs in 26.4 ms