RNA–Protein interactions for RNA: ENST00000254950.12

VPS4A-201, Transcript of vacuolar protein sorting 4 homolog A, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene VPS4A, Length 4,100 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS4A-201ENST00000254950 ADPRHP54922 357 aa11.21□□□□□ -0.61
VPS4A-201ENST00000254950 HNRNPKP61978 463 aaKnown RBP eCLIP11.21□□□□□ -0.61
VPS4A-201ENST00000254950 UAP1L1Q3KQV9 507 aa11.21□□□□□ -0.61
VPS4A-201ENST00000254950 BCL7AQ4VC05 210 aa11.21□□□□□ -0.61
VPS4A-201ENST00000254950 TMEM31Q5JXX7 168 aa11.21□□□□□ -0.61
VPS4A-201ENST00000254950 KIAA0895LQ68EN5 471 aa11.21□□□□□ -0.61
VPS4A-201ENST00000254950 ERICH5Q6P6B1 374 aa11.21□□□□□ -0.61
VPS4A-201ENST00000254950 TMEM184AQ6ZMB5 413 aa11.21□□□□□ -0.61
VPS4A-201ENST00000254950 ZC3H7AQ8IWR0 971 aaKnown RBP11.21□□□□□ -0.61
VPS4A-201ENST00000254950 VWCEQ96DN2 955 aa11.21□□□□□ -0.61
VPS4A-201ENST00000254950 CAMK1GQ96NX5 476 aa11.21□□□□□ -0.61
VPS4A-201ENST00000254950 C20orf27Q9GZN8 174 aa11.21□□□□□ -0.61
VPS4A-201ENST00000254950 MKRN2Q9H000 416 aaKnown RBP11.21□□□□□ -0.61
VPS4A-201ENST00000254950 ALG2Q9H553 416 aa11.21□□□□□ -0.61
VPS4A-201ENST00000254950 PCDHGA2Q9Y5H1 932 aa11.21□□□□□ -0.61
VPS4A-201ENST00000254950 MYO16Q9Y6X6 1858 aa11.21□□□□□ -0.61
VPS4A-201ENST00000254950 A8MUI8 341 aa11.21□□□□□ -0.61
VPS4A-201ENST00000254950 NDUFS4O43181 175 aa11.21□□□□□ -0.61
VPS4A-201ENST00000254950 MBTPS2O43462 519 aa11.21□□□□□ -0.61
VPS4A-201ENST00000254950 IFNA16P05015 189 aa11.21□□□□□ -0.61
VPS4A-201ENST00000254950 TYRP1P17643 537 aa11.21□□□□□ -0.61
VPS4A-201ENST00000254950 RXRGP48443 463 aa11.21□□□□□ -0.61
VPS4A-201ENST00000254950 KCNC1P48547 511 aa11.21□□□□□ -0.61
VPS4A-201ENST00000254950 INHBCP55103 352 aa11.21□□□□□ -0.61
VPS4A-201ENST00000254950 TRIM25Q14258 630 aaKnown RBP11.21□□□□□ -0.61
VPS4A-201ENST00000254950 NAIF1Q69YI7 327 aaPredicted RBP11.21□□□□□ -0.61
VPS4A-201ENST00000254950 NOXRED1Q6NXP6 359 aa11.21□□□□□ -0.61
VPS4A-201ENST00000254950 MCMBPQ9BTE3 642 aa11.21□□□□□ -0.61
VPS4A-201ENST00000254950 NFKBIL1Q9UBC1 381 aaPredicted RBP11.21□□□□□ -0.61
VPS4A-201ENST00000254950 POMPQ9Y244 141 aa11.21□□□□□ -0.61
VPS4A-201ENST00000254950 ELOVL7A1L3X0 281 aa11.21□□□□□ -0.62
VPS4A-201ENST00000254950 PRSS38A1L453 326 aa11.21□□□□□ -0.62
VPS4A-201ENST00000254950 AGRPO00253 132 aa11.21□□□□□ -0.62
VPS4A-201ENST00000254950 PPP6CO00743 305 aa11.21□□□□□ -0.62
VPS4A-201ENST00000254950 UGDHO60701 494 aa11.21□□□□□ -0.62
VPS4A-201ENST00000254950 C1QAP02745 245 aa11.21□□□□□ -0.62
VPS4A-201ENST00000254950 PGRP06401 933 aa11.21□□□□□ -0.62
VPS4A-201ENST00000254950 BMP8BP34820 402 aa11.21□□□□□ -0.62
VPS4A-201ENST00000254950 TPMTP51580 245 aa11.21□□□□□ -0.62
VPS4A-201ENST00000254950 KLC1Q07866 573 aa11.21□□□□□ -0.62
VPS4A-201ENST00000254950 GNA13Q14344 377 aa11.21□□□□□ -0.62
VPS4A-201ENST00000254950 ARHGAP19Q14CB8 494 aa11.21□□□□□ -0.62
VPS4A-201ENST00000254950 GLYATQ6IB77 296 aa11.21□□□□□ -0.62
VPS4A-201ENST00000254950 LRRC58Q96CX6 371 aa11.21□□□□□ -0.62
VPS4A-201ENST00000254950 SLC7A8Q9UHI5 535 aa11.21□□□□□ -0.62
VPS4A-201ENST00000254950 TSPAN11A1L157 253 aa11.2□□□□□ -0.62
VPS4A-201ENST00000254950 MAGEB17A8MXT2 336 aa11.2□□□□□ -0.62
VPS4A-201ENST00000254950 C1orf105O95561 183 aa11.2□□□□□ -0.62
VPS4A-201ENST00000254950 NR2F1P10589 423 aa11.2□□□□□ -0.62
VPS4A-201ENST00000254950 ANPEPP15144 967 aa11.2□□□□□ -0.62
VPS4A-201ENST00000254950 SLC6A2P23975 617 aa11.2□□□□□ -0.62
VPS4A-201ENST00000254950 PRDX3P30048 256 aaKnown RBP11.2□□□□□ -0.62
VPS4A-201ENST00000254950 GGT5P36269 586 aa11.2□□□□□ -0.62
VPS4A-201ENST00000254950 RAD23AP54725 363 aa11.2□□□□□ -0.62
VPS4A-201ENST00000254950 ZNF33BQ06732 778 aa11.2□□□□□ -0.62
VPS4A-201ENST00000254950 AMZ1Q400G9 498 aa11.2□□□□□ -0.62
VPS4A-201ENST00000254950 SPANXN4Q5MJ08 99 aa11.2□□□□□ -0.62
VPS4A-201ENST00000254950 PARGQ86W56 976 aa11.2□□□□□ -0.62
VPS4A-201ENST00000254950 SAMD14Q8IZD0 417 aaPredicted RBP11.2□□□□□ -0.62
VPS4A-201ENST00000254950 SMRP1Q8NCR6 262 aa11.2□□□□□ -0.62
VPS4A-201ENST00000254950 PROX1Q92786 737 aa11.2□□□□□ -0.62
VPS4A-201ENST00000254950 NTMT1Q9BV86 223 aa11.2□□□□□ -0.62
VPS4A-201ENST00000254950 KCNK13Q9HB14 408 aa11.2□□□□□ -0.62
VPS4A-201ENST00000254950 OR52A4PA6NMU1 304 aa11.2□□□□□ -0.62
VPS4A-201ENST00000254950 C2orf74A8MZ97 194 aa11.2□□□□□ -0.62
VPS4A-201ENST00000254950 B3GALT2O43825 422 aa11.2□□□□□ -0.62
VPS4A-201ENST00000254950 HPGDP15428 266 aa11.2□□□□□ -0.62
VPS4A-201ENST00000254950 EFNA1P20827 205 aaPredicted RBP11.2□□□□□ -0.62
VPS4A-201ENST00000254950 VASPP50552 380 aaPredicted RBP11.2□□□□□ -0.62
VPS4A-201ENST00000254950 PWP1Q13610 501 aa11.2□□□□□ -0.62
VPS4A-201ENST00000254950 HLA-DQA1Q5Y7H0 255 aa11.2□□□□□ -0.62
VPS4A-201ENST00000254950 DUS1LQ6P1R4 473 aaKnown RBP11.2□□□□□ -0.62
VPS4A-201ENST00000254950 EID3Q8N140 333 aa11.2□□□□□ -0.62
VPS4A-201ENST00000254950 SYNPOQ8N3V7 929 aa11.2□□□□□ -0.62
VPS4A-201ENST00000254950 NATD1Q8N6N6 113 aa11.2□□□□□ -0.62
VPS4A-201ENST00000254950 PNPT1Q8TCS8 783 aaKnown RBP11.2□□□□□ -0.62
VPS4A-201ENST00000254950 ZBED6CLQ96FA7 236 aaPredicted RBP11.2□□□□□ -0.62
VPS4A-201ENST00000254950 ANKRD27Q96NW4 1050 aa11.2□□□□□ -0.62
VPS4A-201ENST00000254950 UHRF1Q96T88 793 aaPredicted RBP11.2□□□□□ -0.62
VPS4A-201ENST00000254950 CGREF1Q99674 301 aa11.2□□□□□ -0.62
VPS4A-201ENST00000254950 DPH7Q9BTV6 452 aa11.2□□□□□ -0.62
VPS4A-201ENST00000254950 PRDM8Q9NQV8 689 aa11.2□□□□□ -0.62
VPS4A-201ENST00000254950 E7EQ34 232 aa11.2□□□□□ -0.62
VPS4A-201ENST00000254950 PRMT3O60678 531 aa11.2□□□□□ -0.62
VPS4A-201ENST00000254950 SEC24DO94855 1032 aaPredicted RBP11.2□□□□□ -0.62
VPS4A-201ENST00000254950 SLCO2B1O94956 709 aa11.2□□□□□ -0.62
VPS4A-201ENST00000254950 CPN2P22792 545 aa11.2□□□□□ -0.62
VPS4A-201ENST00000254950 FOXA1P55317 472 aa11.2□□□□□ -0.62
VPS4A-201ENST00000254950 SUZ12Q15022 739 aaKnown RBP11.2□□□□□ -0.62
VPS4A-201ENST00000254950 GRHL2Q6ISB3 625 aa11.2□□□□□ -0.62
VPS4A-201ENST00000254950 NLRP8Q86W28 1048 aa11.2□□□□□ -0.62
VPS4A-201ENST00000254950 DCP2Q8IU60 420 aaKnown RBP11.2□□□□□ -0.62
VPS4A-201ENST00000254950 ZNF480Q8WV37 535 aa11.2□□□□□ -0.62
VPS4A-201ENST00000254950 NRBF2Q96F24 287 aa11.2□□□□□ -0.62
VPS4A-201ENST00000254950 PRR11Q96HE9 360 aaPredicted RBP11.2□□□□□ -0.62
VPS4A-201ENST00000254950 LRCH3Q96II8 777 aa11.2□□□□□ -0.62
VPS4A-201ENST00000254950 C9orf16Q9BUW7 83 aa11.2□□□□□ -0.62
VPS4A-201ENST00000254950 ARMC7Q9H6L4 198 aa11.2□□□□□ -0.62
VPS4A-201ENST00000254950 C6orf203Q9P0P8 240 aaPredicted RBP11.2□□□□□ -0.62
VPS4A-201ENST00000254950 CA5BQ9Y2D0 317 aa11.2□□□□□ -0.62
Retrieved 100 of 20,778 RNA–protein pairs in 20.3 ms