RNA–Protein interactions for RNA: ENST00000238112.7

CPSF3-201, Transcript of cleavage and polyadenylation specific factor 3, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CPSF3, Length 2,345 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF3-201ENST00000238112 ALDH4A1P30038 563 aa18.14■□□□□ 0.49
CPSF3-201ENST00000238112 CD6P30203 668 aa18.14■□□□□ 0.49
CPSF3-201ENST00000238112 IRF8Q02556 426 aa18.14■□□□□ 0.49
CPSF3-201ENST00000238112 SFSWAPQ12872 951 aaKnown RBP18.14■□□□□ 0.49
CPSF3-201ENST00000238112 CLCA4Q14CN2 919 aa18.14■□□□□ 0.49
CPSF3-201ENST00000238112 PLEKHS1Q5SXH7 462 aa18.14■□□□□ 0.49
CPSF3-201ENST00000238112 SYT6Q5T7P8 510 aaPredicted RBP18.14■□□□□ 0.49
CPSF3-201ENST00000238112 PRAMEF9Q5VWM5 478 aa18.14■□□□□ 0.49
CPSF3-201ENST00000238112 KIAA1614Q5VZ46 1190 aa18.14■□□□□ 0.49
CPSF3-201ENST00000238112 ZDHHC20Q5W0Z9 365 aa18.14■□□□□ 0.49
CPSF3-201ENST00000238112 CBLL1Q75N03 491 aa18.14■□□□□ 0.49
CPSF3-201ENST00000238112 TSPYL5Q86VY4 417 aaPredicted RBP18.14■□□□□ 0.49
CPSF3-201ENST00000238112 BBS7Q8IWZ6 715 aa18.14■□□□□ 0.49
CPSF3-201ENST00000238112 FIBINQ8TAL6 211 aa18.14■□□□□ 0.49
CPSF3-201ENST00000238112 SCLYQ96I15 445 aa18.14■□□□□ 0.49
CPSF3-201ENST00000238112 MYOCQ99972 504 aa18.14■□□□□ 0.49
CPSF3-201ENST00000238112 DPH2Q9BQC3 489 aaPredicted RBP18.14■□□□□ 0.49
CPSF3-201ENST00000238112 FAM120CQ9NX05 1096 aaKnown RBP18.14■□□□□ 0.49
CPSF3-201ENST00000238112 MBD1Q9UIS9 605 aaPredicted RBP18.14■□□□□ 0.49
CPSF3-201ENST00000238112 INSL5Q9Y5Q6 135 aa18.14■□□□□ 0.49
CPSF3-201ENST00000238112 CKMP06732 381 aa18.14■□□□□ 0.49
CPSF3-201ENST00000238112 CTSOP43234 321 aaPredicted RBP18.14■□□□□ 0.49
CPSF3-201ENST00000238112 VBP1P61758 197 aa18.14■□□□□ 0.49
CPSF3-201ENST00000238112 MVKQ03426 396 aa18.14■□□□□ 0.49
CPSF3-201ENST00000238112 CSTF3Q12996 717 aaKnown RBP18.14■□□□□ 0.49
CPSF3-201ENST00000238112 MAD2L1BPQ15013 274 aaPredicted RBP18.14■□□□□ 0.49
CPSF3-201ENST00000238112 LAIR1Q6GTX8 287 aa18.14■□□□□ 0.49
CPSF3-201ENST00000238112 PTOV1Q86YD1 416 aa18.14■□□□□ 0.49
CPSF3-201ENST00000238112 ECHDC3Q96DC8 303 aa18.14■□□□□ 0.49
CPSF3-201ENST00000238112 FCRL1Q96LA6 429 aa18.14■□□□□ 0.49
CPSF3-201ENST00000238112 ALPK1Q96QP1 1244 aa18.14■□□□□ 0.49
CPSF3-201ENST00000238112 BBS2Q9BXC9 721 aa18.14■□□□□ 0.49
CPSF3-201ENST00000238112 ZDHHC6Q9H6R6 413 aa18.14■□□□□ 0.49
CPSF3-201ENST00000238112 CFAP97Q9P2B7 532 aa18.14■□□□□ 0.49
CPSF3-201ENST00000238112 VPS29Q9UBQ0 182 aa18.14■□□□□ 0.49
CPSF3-201ENST00000238112 GFYI3L273 518 aa18.13■□□□□ 0.49
CPSF3-201ENST00000238112 PITPNM1O00562 1244 aa18.13■□□□□ 0.49
CPSF3-201ENST00000238112 PARNO95453 639 aaKnown RBP18.13■□□□□ 0.49
CPSF3-201ENST00000238112 ACVR2AP27037 513 aa18.13■□□□□ 0.49
CPSF3-201ENST00000238112 MASP1P48740 699 aa18.13■□□□□ 0.49
CPSF3-201ENST00000238112 WNT3P56703 355 aa18.13■□□□□ 0.49
CPSF3-201ENST00000238112 SMN1Q16637 294 aaKnown RBP18.13■□□□□ 0.49
CPSF3-201ENST00000238112 MPP7Q5T2T1 576 aa18.13■□□□□ 0.49
CPSF3-201ENST00000238112 LIPJQ5W064 366 aa18.13■□□□□ 0.49
CPSF3-201ENST00000238112 CLECL1Q8IZS7 167 aa18.13■□□□□ 0.49
CPSF3-201ENST00000238112 OR8J2Q8NGG1 315 aa18.13■□□□□ 0.49
CPSF3-201ENST00000238112 ZFP90Q8TF47 636 aa18.13■□□□□ 0.49
CPSF3-201ENST00000238112 TAMM41Q96BW9 452 aa18.13■□□□□ 0.49
CPSF3-201ENST00000238112 TPD52L3Q96J77 140 aa18.13■□□□□ 0.49
CPSF3-201ENST00000238112 MCCC1Q96RQ3 725 aaPredicted RBP18.13■□□□□ 0.49
CPSF3-201ENST00000238112 PRM3Q9NNZ6 103 aa18.13■□□□□ 0.49
CPSF3-201ENST00000238112 MRPL17Q9NRX2 175 aaKnown RBP18.13■□□□□ 0.49
CPSF3-201ENST00000238112 THUMPD1Q9NXG2 353 aaKnown RBP18.13■□□□□ 0.49
CPSF3-201ENST00000238112 CD84Q9UIB8 345 aa18.13■□□□□ 0.49
CPSF3-201ENST00000238112 PPIL1Q9Y3C6 166 aa18.13■□□□□ 0.49
CPSF3-201ENST00000238112 UPK3BL1B0FP48 263 aa18.12■□□□□ 0.49
CPSF3-201ENST00000238112 UPK3BL2E5RIL1 263 aa18.12■□□□□ 0.49
CPSF3-201ENST00000238112 ATP6V1G1O75348 118 aa18.12■□□□□ 0.49
CPSF3-201ENST00000238112 C1SP09871 688 aa18.12■□□□□ 0.49
CPSF3-201ENST00000238112 HOXA9P31269 272 aa18.12■□□□□ 0.49
CPSF3-201ENST00000238112 HPCAL1P37235 193 aa18.12■□□□□ 0.49
CPSF3-201ENST00000238112 ITGA1P56199 1179 aa18.12■□□□□ 0.49
CPSF3-201ENST00000238112 CYP4F8P98187 520 aa18.12■□□□□ 0.49
CPSF3-201ENST00000238112 DDX39BQ13838 428 aaKnown RBP18.12■□□□□ 0.49
CPSF3-201ENST00000238112 XKR6Q5GH73 641 aa18.12■□□□□ 0.49
CPSF3-201ENST00000238112 PDE12Q6L8Q7 609 aaKnown RBP18.12■□□□□ 0.49
CPSF3-201ENST00000238112 C22orf39Q6P5X5 142 aa18.12■□□□□ 0.49
CPSF3-201ENST00000238112 RHNO1Q9BSD3 238 aa18.12■□□□□ 0.49
CPSF3-201ENST00000238112 PCDH12Q9NPG4 1184 aa18.12■□□□□ 0.49
CPSF3-201ENST00000238112 RASSF1Q9NS23 344 aa18.12■□□□□ 0.49
CPSF3-201ENST00000238112 KPNA5O15131 536 aa18.12■□□□□ 0.49
CPSF3-201ENST00000238112 MRPS14O60783 128 aaKnown RBP18.12■□□□□ 0.49
CPSF3-201ENST00000238112 SCN2BO60939 215 aa18.12■□□□□ 0.49
CPSF3-201ENST00000238112 HOXD10P28358 340 aa18.12■□□□□ 0.49
CPSF3-201ENST00000238112 SPINT3P49223 89 aa18.12■□□□□ 0.49
CPSF3-201ENST00000238112 PFN3P60673 137 aa18.12■□□□□ 0.49
CPSF3-201ENST00000238112 ACSM2AQ08AH3 577 aa18.12■□□□□ 0.49
CPSF3-201ENST00000238112 RAB33AQ14088 237 aa18.12■□□□□ 0.49
CPSF3-201ENST00000238112 OXA1LQ15070 435 aa18.12■□□□□ 0.49
CPSF3-201ENST00000238112 LRRC73Q5JTD7 316 aa18.12■□□□□ 0.49
CPSF3-201ENST00000238112 PERM1Q5SV97 790 aa18.12■□□□□ 0.49
CPSF3-201ENST00000238112 ACSM2BQ68CK6 577 aa18.12■□□□□ 0.49
CPSF3-201ENST00000238112 SERPINA13PQ6UXR4 307 aa18.12■□□□□ 0.49
CPSF3-201ENST00000238112 CPXM2Q8N436 756 aa18.12■□□□□ 0.49
CPSF3-201ENST00000238112 STARD8Q92502 1023 aa18.12■□□□□ 0.49
CPSF3-201ENST00000238112 ELMO1Q92556 727 aa18.12■□□□□ 0.49
CPSF3-201ENST00000238112 ZNF300Q96RE9 604 aaPredicted RBP18.12■□□□□ 0.49
CPSF3-201ENST00000238112 MTERF1Q99551 399 aaKnown RBP18.12■□□□□ 0.49
CPSF3-201ENST00000238112 NEURL2Q9BR09 285 aa18.12■□□□□ 0.49
CPSF3-201ENST00000238112 MROQ9BYG7 248 aa18.12■□□□□ 0.49
CPSF3-201ENST00000238112 IL21Q9HBE4 155 aa18.12■□□□□ 0.49
CPSF3-201ENST00000238112 ACOT13Q9NPJ3 140 aa18.12■□□□□ 0.49
CPSF3-201ENST00000238112 RUVBL1Q9Y265 456 aaKnown RBP18.12■□□□□ 0.49
CPSF3-201ENST00000238112 UGDHO60701 494 aa18.11■□□□□ 0.49
CPSF3-201ENST00000238112 MTX2O75431 263 aa18.11■□□□□ 0.49
CPSF3-201ENST00000238112 SERPINB7O75635 380 aa18.11■□□□□ 0.49
CPSF3-201ENST00000238112 MYO1DO94832 1006 aa18.11■□□□□ 0.49
CPSF3-201ENST00000238112 TPP2P29144 1249 aaPredicted RBP18.11■□□□□ 0.49
CPSF3-201ENST00000238112 EPHA2P29317 976 aa18.11■□□□□ 0.49
CPSF3-201ENST00000238112 KRT20P35900 424 aa18.11■□□□□ 0.49
Retrieved 100 of 20,778 RNA–protein pairs in 21 ms