RNA–Protein interactions for RNA: ENST00000620786.4

CLIP1-219, Transcript of CAP-Gly domain containing linker protein 1, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene CLIP1, Length 5,913 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP1-219ENST00000620786 GATBO75879 557 aaKnown RBP11.09□□□□□ -0.63
CLIP1-219ENST00000620786 SRPRAP08240 638 aaKnown RBP11.09□□□□□ -0.63
CLIP1-219ENST00000620786 SDC2P34741 201 aa11.09□□□□□ -0.63
CLIP1-219ENST00000620786 BMPR1AP36894 532 aa11.09□□□□□ -0.63
CLIP1-219ENST00000620786 TMEM115Q12893 351 aaPredicted RBP11.09□□□□□ -0.63
CLIP1-219ENST00000620786 SP140Q13342 867 aa11.09□□□□□ -0.63
CLIP1-219ENST00000620786 SEMA3AQ14563 771 aa11.09□□□□□ -0.63
CLIP1-219ENST00000620786 CYP27C1Q4G0S4 372 aa11.09□□□□□ -0.63
CLIP1-219ENST00000620786 GOLGA7Q7Z5G4 137 aa11.09□□□□□ -0.63
CLIP1-219ENST00000620786 SYVN1Q86TM6 617 aa11.09□□□□□ -0.63
CLIP1-219ENST00000620786 MARCH7Q9H992 704 aa11.09□□□□□ -0.63
CLIP1-219ENST00000620786 RC3H2Q9HBD1 1191 aaKnown RBP11.09□□□□□ -0.63
CLIP1-219ENST00000620786 POLE3Q9NRF9 147 aa11.09□□□□□ -0.63
CLIP1-219ENST00000620786 HCN2Q9UL51 889 aa11.09□□□□□ -0.63
CLIP1-219ENST00000620786 FZD4Q9ULV1 537 aa11.09□□□□□ -0.63
CLIP1-219ENST00000620786 GRIA1P42261 906 aa11.08□□□□□ -0.64
CLIP1-219ENST00000620786 VSX2P58304 361 aaPredicted RBP11.08□□□□□ -0.64
CLIP1-219ENST00000620786 CREB5Q02930 508 aa11.08□□□□□ -0.64
CLIP1-219ENST00000620786 PLEKHG6Q3KR16 790 aa11.08□□□□□ -0.64
CLIP1-219ENST00000620786 PERM1Q5SV97 790 aa11.08□□□□□ -0.64
CLIP1-219ENST00000620786 TMCO2Q7Z6W1 182 aaPredicted RBP11.08□□□□□ -0.64
CLIP1-219ENST00000620786 SMG8Q8ND04 991 aaKnown RBP11.08□□□□□ -0.64
CLIP1-219ENST00000620786 ZNF641Q96N77 438 aaPredicted RBP11.08□□□□□ -0.64
CLIP1-219ENST00000620786 LENG8Q96PV6 779 aaPredicted RBP11.08□□□□□ -0.64
CLIP1-219ENST00000620786 ABCB9Q9NP78 766 aa11.08□□□□□ -0.64
CLIP1-219ENST00000620786 ING3Q9NXR8 418 aa11.08□□□□□ -0.64
CLIP1-219ENST00000620786 LGALS13Q9UHV8 139 aa11.08□□□□□ -0.64
CLIP1-219ENST00000620786 MAN2B2Q9Y2E5 1009 aa11.08□□□□□ -0.64
CLIP1-219ENST00000620786 KCTD3Q9Y597 815 aa11.08□□□□□ -0.64
CLIP1-219ENST00000620786 CDH1P12830 882 aa11.08□□□□□ -0.64
CLIP1-219ENST00000620786 CASP6P55212 293 aa11.08□□□□□ -0.64
CLIP1-219ENST00000620786 RPL26P61254 145 aaKnown RBP11.08□□□□□ -0.64
CLIP1-219ENST00000620786 VBP1P61758 197 aa11.08□□□□□ -0.64
CLIP1-219ENST00000620786 KLF1Q13351 362 aaPredicted RBP11.08□□□□□ -0.64
CLIP1-219ENST00000620786 PAFAH1B3Q15102 231 aaKnown RBP11.08□□□□□ -0.64
CLIP1-219ENST00000620786 SUSD1Q6UWL2 747 aa11.08□□□□□ -0.64
CLIP1-219ENST00000620786 LIN28BQ6ZN17 250 aaKnown RBP eCLIP11.08□□□□□ -0.64
CLIP1-219ENST00000620786 AHSA2Q719I0 299 aa11.08□□□□□ -0.64
CLIP1-219ENST00000620786 CPNE8Q86YQ8 564 aa11.08□□□□□ -0.64
CLIP1-219ENST00000620786 RBM15BQ8NDT2 890 aaKnown RBP11.08□□□□□ -0.64
CLIP1-219ENST00000620786 MMABQ96EY8 250 aaPredicted RBP11.08□□□□□ -0.64
CLIP1-219ENST00000620786 COL21A1Q96P44 957 aa11.08□□□□□ -0.64
CLIP1-219ENST00000620786 PSKH2Q96QS6 385 aa11.08□□□□□ -0.64
CLIP1-219ENST00000620786 GMLQ99445 158 aa11.08□□□□□ -0.64
CLIP1-219ENST00000620786 SEC61A2Q9H9S3 476 aa11.08□□□□□ -0.64
CLIP1-219ENST00000620786 PDE7BQ9NP56 450 aa11.08□□□□□ -0.64
CLIP1-219ENST00000620786 RPL26L1Q9UNX3 145 aaKnown RBP11.08□□□□□ -0.64
CLIP1-219ENST00000620786 C2orf78A6NCI8 922 aa11.08□□□□□ -0.64
CLIP1-219ENST00000620786 DUX1O43812 170 aa11.08□□□□□ -0.64
CLIP1-219ENST00000620786 MTRF1O75570 445 aaKnown RBP11.08□□□□□ -0.64
CLIP1-219ENST00000620786 TMEM63AO94886 807 aa11.08□□□□□ -0.64
CLIP1-219ENST00000620786 PAK4O96013 591 aaPredicted RBP11.08□□□□□ -0.64
CLIP1-219ENST00000620786 BCHEP06276 602 aa11.08□□□□□ -0.64
CLIP1-219ENST00000620786 ZNF865P0CJ78 1059 aaPredicted RBP11.08□□□□□ -0.64
CLIP1-219ENST00000620786 STK19P49842 368 aaPredicted RBP11.08□□□□□ -0.64
CLIP1-219ENST00000620786 HSF2Q03933 536 aa11.08□□□□□ -0.64
CLIP1-219ENST00000620786 CHAF1BQ13112 559 aa11.08□□□□□ -0.64
CLIP1-219ENST00000620786 NPY5RQ15761 445 aa11.08□□□□□ -0.64
CLIP1-219ENST00000620786 QPCTQ16769 361 aa11.08□□□□□ -0.64
CLIP1-219ENST00000620786 PHOSPHO1Q8TCT1 267 aa11.08□□□□□ -0.64
CLIP1-219ENST00000620786 RAB7BQ96AH8 199 aa11.08□□□□□ -0.64
CLIP1-219ENST00000620786 LRRC46Q96FV0 321 aa11.08□□□□□ -0.64
CLIP1-219ENST00000620786 TGM7Q96PF1 710 aa11.08□□□□□ -0.64
CLIP1-219ENST00000620786 PCYT2Q99447 389 aa11.08□□□□□ -0.64
CLIP1-219ENST00000620786 ZNF717Q9BY31 904 aaPredicted RBP11.08□□□□□ -0.64
CLIP1-219ENST00000620786 TPK1Q9H3S4 243 aa11.08□□□□□ -0.64
CLIP1-219ENST00000620786 TELO2Q9Y4R8 837 aa11.08□□□□□ -0.64
CLIP1-219ENST00000620786 FAM208AQ9UK61 1670 aaKnown RBP11.08□□□□□ -0.64
CLIP1-219ENST00000620786 TCRBV7S3A2A0A539 114 aa11.08□□□□□ -0.64
CLIP1-219ENST00000620786 TBX1O43435 398 aa11.08□□□□□ -0.64
CLIP1-219ENST00000620786 GPIP06744 558 aa11.08□□□□□ -0.64
CLIP1-219ENST00000620786 GP1BBP13224 206 aa11.08□□□□□ -0.64
CLIP1-219ENST00000620786 ZNF3P17036 446 aa11.08□□□□□ -0.64
CLIP1-219ENST00000620786 JUNDP17535 347 aa11.08□□□□□ -0.64
CLIP1-219ENST00000620786 RBMS1P29558 406 aaKnown RBP11.08□□□□□ -0.64
CLIP1-219ENST00000620786 ETV3P41162 512 aa11.08□□□□□ -0.64
CLIP1-219ENST00000620786 BCAP31P51572 246 aa11.08□□□□□ -0.64
CLIP1-219ENST00000620786 CD47Q08722 323 aa11.08□□□□□ -0.64
CLIP1-219ENST00000620786 YTHDF3Q7Z739 585 aaKnown RBP11.08□□□□□ -0.64
CLIP1-219ENST00000620786 TXNDC5Q8NBS9 432 aaKnown RBP11.08□□□□□ -0.64
CLIP1-219ENST00000620786 S100ZQ8WXG8 99 aa11.08□□□□□ -0.64
CLIP1-219ENST00000620786 JPH3Q8WXH2 748 aaPredicted RBP11.08□□□□□ -0.64
CLIP1-219ENST00000620786 CAMK1GQ96NX5 476 aa11.08□□□□□ -0.64
CLIP1-219ENST00000620786 TBX5Q99593 518 aa11.08□□□□□ -0.64
CLIP1-219ENST00000620786 LGR4Q9BXB1 951 aa11.08□□□□□ -0.64
CLIP1-219ENST00000620786 NLE1Q9NVX2 485 aaPredicted RBP11.08□□□□□ -0.64
CLIP1-219ENST00000620786 RSL24D1Q9UHA3 163 aaKnown RBP11.08□□□□□ -0.64
CLIP1-219ENST00000620786 PCDHGB7Q9Y5F8 929 aa11.08□□□□□ -0.64
CLIP1-219ENST00000620786 PIAS3Q9Y6X2 628 aa11.08□□□□□ -0.64
CLIP1-219ENST00000620786 RFPL2O75678 378 aa11.08□□□□□ -0.64
CLIP1-219ENST00000620786 KAT7O95251 611 aa11.08□□□□□ -0.64
CLIP1-219ENST00000620786 SIX3O95343 332 aaPredicted RBP11.08□□□□□ -0.64
CLIP1-219ENST00000620786 GSRP00390 522 aa11.08□□□□□ -0.64
CLIP1-219ENST00000620786 LINGO3P0C6S8 592 aa11.08□□□□□ -0.64
CLIP1-219ENST00000620786 STARP49675 285 aa11.08□□□□□ -0.64
CLIP1-219ENST00000620786 CAPZA1P52907 286 aa11.08□□□□□ -0.64
CLIP1-219ENST00000620786 RPS13P62277 151 aaKnown RBP11.08□□□□□ -0.64
CLIP1-219ENST00000620786 C1orf61Q13536 156 aa11.08□□□□□ -0.64
CLIP1-219ENST00000620786 KBTBD6Q86V97 674 aa11.08□□□□□ -0.64
CLIP1-219ENST00000620786 TDRPQ86YL5 185 aa11.08□□□□□ -0.64
Retrieved 100 of 20,778 RNA–protein pairs in 49.5 ms