RNA–Protein interactions for RNA: ENST00000618700.4

UPF3A-211, Transcript of UPF3A, regulator of nonsense mediated mRNA decay, humanhuman

TSL 2

Gene UPF3A, Length 1,210 nt, Biotype retained intron.

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF3A-211ENST00000618700 PHF21BQ96EK2 531 aa18.96■□□□□ 0.63
UPF3A-211ENST00000618700 ATP6V1G3Q96LB4 118 aa18.96■□□□□ 0.63
UPF3A-211ENST00000618700 C1QTNF3Q9BXJ4 246 aa18.96■□□□□ 0.63
UPF3A-211ENST00000618700 STRADBQ9C0K7 418 aa18.96■□□□□ 0.63
UPF3A-211ENST00000618700 MRPS30Q9NP92 439 aaKnown RBP18.96■□□□□ 0.63
UPF3A-211ENST00000618700 DNAJC11Q9NVH1 559 aa18.96■□□□□ 0.63
UPF3A-211ENST00000618700 CUEDC1Q9NWM3 386 aaPredicted RBP18.96■□□□□ 0.63
UPF3A-211ENST00000618700 SIDT1Q9NXL6 827 aaKnown RBP18.96■□□□□ 0.63
UPF3A-211ENST00000618700 ANKMY1Q9P2S6 941 aa18.96■□□□□ 0.63
UPF3A-211ENST00000618700 MID2Q9UJV3 735 aa18.96■□□□□ 0.63
UPF3A-211ENST00000618700 WASF3Q9UPY6 502 aa18.96■□□□□ 0.63
UPF3A-211ENST00000618700 TNPO3Q9Y5L0 923 aaKnown RBP18.96■□□□□ 0.63
UPF3A-211ENST00000618700 PCM1Q15154 2024 aa18.95■□□□□ 0.62
UPF3A-211ENST00000618700 OR2A25A4D2G3 310 aa18.95■□□□□ 0.62
UPF3A-211ENST00000618700 FAM149AA5PLN7 773 aa18.95■□□□□ 0.62
UPF3A-211ENST00000618700 K7EPI3 171 aa18.95■□□□□ 0.62
UPF3A-211ENST00000618700 CCNT2O60583 730 aaKnown RBP18.95■□□□□ 0.62
UPF3A-211ENST00000618700 SIX3O95343 332 aaPredicted RBP18.95■□□□□ 0.62
UPF3A-211ENST00000618700 RPS17P08708 135 aaKnown RBP18.95■□□□□ 0.62
UPF3A-211ENST00000618700 MYL2P10916 166 aa18.95■□□□□ 0.62
UPF3A-211ENST00000618700 JUPP14923 745 aa18.95■□□□□ 0.62
UPF3A-211ENST00000618700 EPORP19235 508 aa18.95■□□□□ 0.62
UPF3A-211ENST00000618700 EEF1DP29692 281 aaKnown RBP18.95■□□□□ 0.62
UPF3A-211ENST00000618700 ETV4P43268 484 aa18.95■□□□□ 0.62
UPF3A-211ENST00000618700 CDC16Q13042 620 aa18.95■□□□□ 0.62
UPF3A-211ENST00000618700 FCRL6Q6DN72 434 aa18.95■□□□□ 0.62
UPF3A-211ENST00000618700 PAQR7Q86WK9 346 aa18.95■□□□□ 0.62
UPF3A-211ENST00000618700 SLC22A9Q8IVM8 553 aa18.95■□□□□ 0.62
UPF3A-211ENST00000618700 D2HGDHQ8N465 521 aa18.95■□□□□ 0.62
UPF3A-211ENST00000618700 ARMC2Q8NEN0 867 aa18.95■□□□□ 0.62
UPF3A-211ENST00000618700 NEIL2Q969S2 332 aa18.95■□□□□ 0.62
UPF3A-211ENST00000618700 ZUFSPQ96AP4 578 aa18.95■□□□□ 0.62
UPF3A-211ENST00000618700 FAM111AQ96PZ2 611 aa18.95■□□□□ 0.62
UPF3A-211ENST00000618700 TMEM237Q96Q45 408 aa18.95■□□□□ 0.62
UPF3A-211ENST00000618700 KLHL25Q9H0H3 589 aa18.95■□□□□ 0.62
UPF3A-211ENST00000618700 ACBD3Q9H3P7 528 aa18.95■□□□□ 0.62
UPF3A-211ENST00000618700 GPRC5BQ9NZH0 403 aa18.95■□□□□ 0.62
UPF3A-211ENST00000618700 COPG2Q9UBF2 871 aa18.95■□□□□ 0.62
UPF3A-211ENST00000618700 OPTCQ9UBM4 332 aa18.95■□□□□ 0.62
UPF3A-211ENST00000618700 KLHL20Q9Y2M5 609 aa18.95■□□□□ 0.62
UPF3A-211ENST00000618700 CCDC187A0A096LP49 1063 aa18.94■□□□□ 0.62
UPF3A-211ENST00000618700 A0A1W2PNU3 283 aaPredicted RBP18.94■□□□□ 0.62
UPF3A-211ENST00000618700 E2F3O00716 465 aa18.94■□□□□ 0.62
UPF3A-211ENST00000618700 TM9SF1O15321 606 aa18.94■□□□□ 0.62
UPF3A-211ENST00000618700 HYAL3O43820 417 aaPredicted RBP18.94■□□□□ 0.62
UPF3A-211ENST00000618700 PRAMEF10O60809 474 aa18.94■□□□□ 0.62
UPF3A-211ENST00000618700 CPA3P15088 417 aa18.94■□□□□ 0.62
UPF3A-211ENST00000618700 HRH2P25021 359 aa18.94■□□□□ 0.62
UPF3A-211ENST00000618700 SEPHS1P49903 392 aa18.94■□□□□ 0.62
UPF3A-211ENST00000618700 PRKAA2P54646 552 aa18.94■□□□□ 0.62
UPF3A-211ENST00000618700 HERVK_113P63132 956 aa18.94■□□□□ 0.62
UPF3A-211ENST00000618700 HSD11B2P80365 405 aa18.94■□□□□ 0.62
UPF3A-211ENST00000618700 MPP2Q14168 576 aa18.94■□□□□ 0.62
UPF3A-211ENST00000618700 PCLAFQ15004 111 aa18.94■□□□□ 0.62
UPF3A-211ENST00000618700 PDK4Q16654 411 aa18.94■□□□□ 0.62
UPF3A-211ENST00000618700 FIGLAQ6QHK4 219 aa18.94■□□□□ 0.62
UPF3A-211ENST00000618700 MARCH9Q86YJ5 346 aa18.94■□□□□ 0.62
UPF3A-211ENST00000618700 CCDC63Q8NA47 563 aa18.94■□□□□ 0.62
UPF3A-211ENST00000618700 AGBL5Q8NDL9 886 aa18.94■□□□□ 0.62
UPF3A-211ENST00000618700 ABHD11Q8NFV4 315 aa18.94■□□□□ 0.62
UPF3A-211ENST00000618700 SLC5A11Q8WWX8 675 aa18.94■□□□□ 0.62
UPF3A-211ENST00000618700 CCDC126Q96EE4 140 aa18.94■□□□□ 0.62
UPF3A-211ENST00000618700 TCTN2Q96GX1 697 aa18.94■□□□□ 0.62
UPF3A-211ENST00000618700 PLCD4Q9BRC7 762 aa18.94■□□□□ 0.62
UPF3A-211ENST00000618700 DPH7Q9BTV6 452 aa18.94■□□□□ 0.62
UPF3A-211ENST00000618700 ERVK-6Q9BXR3 956 aa18.94■□□□□ 0.62
UPF3A-211ENST00000618700 SOHLH2Q9NX45 425 aa18.94■□□□□ 0.62
UPF3A-211ENST00000618700 PCTPQ9UKL6 214 aa18.94■□□□□ 0.62
UPF3A-211ENST00000618700 KCNE2Q9Y6J6 123 aa18.94■□□□□ 0.62
UPF3A-211ENST00000618700 KNTC1P50748 2209 aa18.93■□□□□ 0.62
UPF3A-211ENST00000618700 ATP8B1O43520 1251 aa18.93■□□□□ 0.62
UPF3A-211ENST00000618700 NRP2O60462 931 aa18.93■□□□□ 0.62
UPF3A-211ENST00000618700 MSL3P1P0C860 447 aa18.93■□□□□ 0.62
UPF3A-211ENST00000618700 CDH1P12830 882 aa18.93■□□□□ 0.62
UPF3A-211ENST00000618700 CSTF2P33240 577 aaKnown RBP eCLIP18.93■□□□□ 0.62
UPF3A-211ENST00000618700 PCDH1Q08174 1060 aa18.93■□□□□ 0.62
UPF3A-211ENST00000618700 FOXC1Q12948 553 aa18.93■□□□□ 0.62
UPF3A-211ENST00000618700 EIF3IQ13347 325 aaKnown RBP18.93■□□□□ 0.62
UPF3A-211ENST00000618700 ZNF678Q5SXM1 525 aa18.93■□□□□ 0.62
UPF3A-211ENST00000618700 GOLGA6L1Q8N7Z2 621 aa18.93■□□□□ 0.62
UPF3A-211ENST00000618700 BMPERQ8N8U9 685 aa18.93■□□□□ 0.62
UPF3A-211ENST00000618700 SNX31Q8N9S9 440 aa18.93■□□□□ 0.62
UPF3A-211ENST00000618700 L3HYPDHQ96EM0 354 aa18.93■□□□□ 0.62
UPF3A-211ENST00000618700 CMKLR1Q99788 373 aa18.93■□□□□ 0.62
UPF3A-211ENST00000618700 FAM60AQ9NP50 221 aa18.93■□□□□ 0.62
UPF3A-211ENST00000618700 PDE7BQ9NP56 450 aa18.93■□□□□ 0.62
UPF3A-211ENST00000618700 TMEM184CQ9NVA4 438 aa18.93■□□□□ 0.62
UPF3A-211ENST00000618700 DYRK1BQ9Y463 629 aa18.93■□□□□ 0.62
UPF3A-211ENST00000618700 LOXL2Q9Y4K0 774 aa18.93■□□□□ 0.62
UPF3A-211ENST00000618700 HMGB1P1B2RPK0 211 aaPredicted RBP18.92■□□□□ 0.62
UPF3A-211ENST00000618700 E7EQ34 232 aa18.92■□□□□ 0.62
UPF3A-211ENST00000618700 MAP3K7O43318 606 aa18.92■□□□□ 0.62
UPF3A-211ENST00000618700 ZWINTO95229 277 aa18.92■□□□□ 0.62
UPF3A-211ENST00000618700 FOLR1P15328 257 aa18.92■□□□□ 0.62
UPF3A-211ENST00000618700 GNAZP19086 355 aa18.92■□□□□ 0.62
UPF3A-211ENST00000618700 GABRA4P48169 554 aa18.92■□□□□ 0.62
UPF3A-211ENST00000618700 PIK3CGP48736 1102 aa18.92■□□□□ 0.62
UPF3A-211ENST00000618700 SLC18A1P54219 525 aa18.92■□□□□ 0.62
UPF3A-211ENST00000618700 DNAJB13P59910 316 aa18.92■□□□□ 0.62
UPF3A-211ENST00000618700 SH3BP2P78314 561 aa18.92■□□□□ 0.62
Retrieved 100 of 20,778 RNA–protein pairs in 28.7 ms