RNA–Protein interactions for RNA: ENST00000597995.1

TRIM28-212, Transcript of tripartite motif containing 28, humanhuman

TSL 2

Gene TRIM28, Length 702 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM28-212ENST00000597995 PRMT5O14744 637 aaPredicted RBP11.93□□□□□ -0.5
TRIM28-212ENST00000597995 PCDH17O14917 1159 aa11.93□□□□□ -0.5
TRIM28-212ENST00000597995 KPNA5O15131 536 aa11.93□□□□□ -0.5
TRIM28-212ENST00000597995 NRDCO43847 1150 aa11.93□□□□□ -0.5
TRIM28-212ENST00000597995 KRT14P02533 472 aa11.93□□□□□ -0.5
TRIM28-212ENST00000597995 COILP38432 576 aaPredicted RBP11.93□□□□□ -0.5
TRIM28-212ENST00000597995 EMP3P54852 163 aa11.93□□□□□ -0.5
TRIM28-212ENST00000597995 ARG2P78540 354 aa11.93□□□□□ -0.5
TRIM28-212ENST00000597995 NAA25Q14CX7 972 aa11.93□□□□□ -0.5
TRIM28-212ENST00000597995 MUM1Q2TAK8 710 aa11.93□□□□□ -0.5
TRIM28-212ENST00000597995 AARS2Q5JTZ9 985 aaKnown RBP11.93□□□□□ -0.5
TRIM28-212ENST00000597995 CTSL3PQ5NE16 218 aa11.93□□□□□ -0.5
TRIM28-212ENST00000597995 NDUFAF7Q7L592 441 aa11.93□□□□□ -0.5
TRIM28-212ENST00000597995 TAX1BP1Q86VP1 789 aa11.93□□□□□ -0.5
TRIM28-212ENST00000597995 AGGF1Q8N302 714 aaeCLIP11.93□□□□□ -0.5
TRIM28-212ENST00000597995 OR2L3Q8NG85 312 aa11.93□□□□□ -0.5
TRIM28-212ENST00000597995 GSDMBQ8TAX9 411 aa11.93□□□□□ -0.5
TRIM28-212ENST00000597995 PSMF1Q92530 271 aa11.93□□□□□ -0.5
TRIM28-212ENST00000597995 HAS2Q92819 552 aa11.93□□□□□ -0.5
TRIM28-212ENST00000597995 PANX3Q96QZ0 392 aa11.93□□□□□ -0.5
TRIM28-212ENST00000597995 OSBPL9Q96SU4 736 aa11.93□□□□□ -0.5
TRIM28-212ENST00000597995 ZNF160Q9HCG1 818 aa11.93□□□□□ -0.5
TRIM28-212ENST00000597995 ZC3H7BQ9UGR2 993 aaKnown RBP11.93□□□□□ -0.5
TRIM28-212ENST00000597995 CIDEBQ9UHD4 219 aa11.93□□□□□ -0.5
TRIM28-212ENST00000597995 ANAPC5Q9UJX4 755 aa11.93□□□□□ -0.5
TRIM28-212ENST00000597995 C3orf18Q9UK00 162 aa11.93□□□□□ -0.5
TRIM28-212ENST00000597995 SOX13Q9UN79 622 aa11.93□□□□□ -0.5
TRIM28-212ENST00000597995 KLF2Q9Y5W3 355 aaPredicted RBP11.93□□□□□ -0.5
TRIM28-212ENST00000597995 NSG1A0A0A6YYJ2 146 aa11.92□□□□□ -0.5
TRIM28-212ENST00000597995 VAPBO95292 243 aa11.92□□□□□ -0.5
TRIM28-212ENST00000597995 BMP10O95393 424 aa11.92□□□□□ -0.5
TRIM28-212ENST00000597995 MED26O95402 600 aa11.92□□□□□ -0.5
TRIM28-212ENST00000597995 C1orf105O95561 183 aa11.92□□□□□ -0.5
TRIM28-212ENST00000597995 SERPINA7P05543 415 aa11.92□□□□□ -0.5
TRIM28-212ENST00000597995 PRR35P0CG20 571 aa11.92□□□□□ -0.5
TRIM28-212ENST00000597995 RPS3P23396 243 aaKnown RBP eCLIP11.92□□□□□ -0.52e-9■■■□□ 18.2
TRIM28-212ENST00000597995 SOX11P35716 441 aa11.92□□□□□ -0.5
TRIM28-212ENST00000597995 CCNFP41002 786 aa11.92□□□□□ -0.5
TRIM28-212ENST00000597995 TTPAP49638 278 aa11.92□□□□□ -0.5
TRIM28-212ENST00000597995 TNFSF10P50591 281 aa11.92□□□□□ -0.5
TRIM28-212ENST00000597995 TDGF1P3P51864 188 aa11.92□□□□□ -0.5
TRIM28-212ENST00000597995 FRMPD2BQ6IN97 320 aa11.92□□□□□ -0.5
TRIM28-212ENST00000597995 CCDC137Q6PK04 289 aaKnown RBP11.92□□□□□ -0.5
TRIM28-212ENST00000597995 RIPOR1Q6ZS17 1223 aa11.92□□□□□ -0.5
TRIM28-212ENST00000597995 RNF44Q7L0R7 432 aa11.92□□□□□ -0.5
TRIM28-212ENST00000597995 SPNS2Q8IVW8 549 aa11.92□□□□□ -0.5
TRIM28-212ENST00000597995 MCEMP1Q8IX19 187 aa11.92□□□□□ -0.5
TRIM28-212ENST00000597995 DTWD1Q8N5C7 304 aa11.92□□□□□ -0.5
TRIM28-212ENST00000597995 METTL27Q8N6F8 245 aaPredicted RBP11.92□□□□□ -0.5
TRIM28-212ENST00000597995 OR2A1Q8NGT9 310 aa11.92□□□□□ -0.5
TRIM28-212ENST00000597995 MAGEC3Q8TD91 643 aa11.92□□□□□ -0.5
TRIM28-212ENST00000597995 NR4A3Q92570 626 aa11.92□□□□□ -0.5
TRIM28-212ENST00000597995 MVB12AQ96EY5 273 aa11.92□□□□□ -0.5
TRIM28-212ENST00000597995 BIRC8Q96P09 236 aa11.92□□□□□ -0.5
TRIM28-212ENST00000597995 PHF12Q96QT6 1004 aa11.92□□□□□ -0.5
TRIM28-212ENST00000597995 TAAR6Q96RI8 345 aa11.92□□□□□ -0.5
TRIM28-212ENST00000597995 UNKQ9C0B0 810 aaKnown RBP11.92□□□□□ -0.5
TRIM28-212ENST00000597995 TRMT1Q9NXH9 659 aaKnown RBP11.92□□□□□ -0.5
TRIM28-212ENST00000597995 CDC14AQ9UNH5 594 aa11.92□□□□□ -0.5
TRIM28-212ENST00000597995 LOC105369274A0A096LPK9 316 aa11.91□□□□□ -0.5
TRIM28-212ENST00000597995 LOC102723532A0A0G2JNH3 316 aa11.91□□□□□ -0.5
TRIM28-212ENST00000597995 A0A0J9YVX5 310 aa11.91□□□□□ -0.5
TRIM28-212ENST00000597995 OR2A25A4D2G3 310 aa11.91□□□□□ -0.5
TRIM28-212ENST00000597995 USP27XA6NNY8 438 aa11.91□□□□□ -0.5
TRIM28-212ENST00000597995 AP3B1O00203 1094 aa11.91□□□□□ -0.5
TRIM28-212ENST00000597995 PRPF4O43172 522 aaKnown RBP eCLIP11.91□□□□□ -0.5
TRIM28-212ENST00000597995 PHF2O75151 1096 aa11.91□□□□□ -0.5
TRIM28-212ENST00000597995 F7P08709 466 aaPredicted RBP11.91□□□□□ -0.5
TRIM28-212ENST00000597995 COX6A1P12074 109 aa11.91□□□□□ -0.5
TRIM28-212ENST00000597995 FBLP22087 321 aaKnown RBP11.91□□□□□ -0.5
TRIM28-212ENST00000597995 CXCR2P25025 360 aa11.91□□□□□ -0.5
TRIM28-212ENST00000597995 EMP2P54851 167 aa11.91□□□□□ -0.5
TRIM28-212ENST00000597995 AP2B1P63010 937 aa11.91□□□□□ -0.5
TRIM28-212ENST00000597995 TYSND1Q2T9J0 566 aa11.91□□□□□ -0.5
TRIM28-212ENST00000597995 ZNF800Q2TB10 664 aaPredicted RBP eCLIP11.91□□□□□ -0.52e-7■□□□□ 10.6
TRIM28-212ENST00000597995 PRTGQ2VWP7 1150 aa11.91□□□□□ -0.5
TRIM28-212ENST00000597995 VWA2Q5GFL6 755 aa11.91□□□□□ -0.5
TRIM28-212ENST00000597995 PTRHD1Q6GMV3 140 aaKnown RBP11.91□□□□□ -0.5
TRIM28-212ENST00000597995 KIAA0930Q6ICG6 404 aaPredicted RBP11.91□□□□□ -0.5
TRIM28-212ENST00000597995 FBXO42Q6P3S6 717 aa11.91□□□□□ -0.5
TRIM28-212ENST00000597995 LRRC6Q86X45 466 aa11.91□□□□□ -0.5
TRIM28-212ENST00000597995 OR4N4Q8N0Y3 316 aa11.91□□□□□ -0.5
TRIM28-212ENST00000597995 DNAJB8Q8NHS0 232 aa11.91□□□□□ -0.5
TRIM28-212ENST00000597995 ACTRT1Q8TDG2 376 aa11.91□□□□□ -0.5
TRIM28-212ENST00000597995 LPGAT1Q92604 370 aa11.91□□□□□ -0.5
TRIM28-212ENST00000597995 C8orf44Q96CB5 159 aa11.91□□□□□ -0.5
TRIM28-212ENST00000597995 MAGEB10Q96LZ2 347 aaPredicted RBP11.91□□□□□ -0.5
TRIM28-212ENST00000597995 FOPNLQ96NB1 174 aa11.91□□□□□ -0.5
TRIM28-212ENST00000597995 MIPEPQ99797 713 aa11.91□□□□□ -0.5
TRIM28-212ENST00000597995 ZFYVE21Q9BQ24 234 aa11.91□□□□□ -0.5
TRIM28-212ENST00000597995 MESP1Q9BRJ9 268 aa11.91□□□□□ -0.5
TRIM28-212ENST00000597995 RNF32Q9H0A6 362 aa11.91□□□□□ -0.5
TRIM28-212ENST00000597995 SPATA7Q9P0W8 599 aa11.91□□□□□ -0.5
TRIM28-212ENST00000597995 PTGFRNQ9P2B2 879 aa11.91□□□□□ -0.5
TRIM28-212ENST00000597995 GALPQ9UBC7 116 aa11.91□□□□□ -0.5
TRIM28-212ENST00000597995 GNPTGQ9UJJ9 305 aa11.91□□□□□ -0.5
TRIM28-212ENST00000597995 MRPS2Q9Y399 296 aaKnown RBP11.91□□□□□ -0.5
TRIM28-212ENST00000597995 LOC102723996A0A087X1L8 192 aa11.9□□□□□ -0.5
TRIM28-212ENST00000597995 IGHV1-45A0A0A0MS14 117 aa11.9□□□□□ -0.5
TRIM28-212ENST00000597995 A0A1W2PPV9 198 aa11.9□□□□□ -0.5
Retrieved 100 of 20,778 RNA–protein pairs in 50.2 ms