RNA–Protein interactions for RNA: ENST00000597618.5

TRIM28-210, Transcript of tripartite motif containing 28, humanhuman

TSL 2

Gene TRIM28, Length 609 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM28-210ENST00000597618 CYC1P08574 325 aa9.6□□□□□ -0.87
TRIM28-210ENST00000597618 C8orf89P0DMQ9 161 aa9.6□□□□□ -0.87
TRIM28-210ENST00000597618 COMTP21964 271 aa9.6□□□□□ -0.87
TRIM28-210ENST00000597618 MSNP26038 577 aaKnown RBP9.6□□□□□ -0.87
TRIM28-210ENST00000597618 SLC26A3P40879 764 aa9.6□□□□□ -0.87
TRIM28-210ENST00000597618 IST1P53990 364 aa9.6□□□□□ -0.87
TRIM28-210ENST00000597618 FOLH1Q04609 750 aa9.6□□□□□ -0.87
TRIM28-210ENST00000597618 HSPA14Q0VDF9 509 aa9.6□□□□□ -0.87
TRIM28-210ENST00000597618 OR1C1Q15619 314 aa9.6□□□□□ -0.87
TRIM28-210ENST00000597618 PRTGQ2VWP7 1150 aa9.6□□□□□ -0.87
TRIM28-210ENST00000597618 ANKRD20A2Q5SQ80 823 aa9.6□□□□□ -0.87
TRIM28-210ENST00000597618 ANKRD20A1Q5TYW2 823 aa9.6□□□□□ -0.87
TRIM28-210ENST00000597618 ANKRD20A3Q5VUR7 823 aa9.6□□□□□ -0.87
TRIM28-210ENST00000597618 PLAG1Q6DJT9 500 aa9.6□□□□□ -0.87
TRIM28-210ENST00000597618 TTC23LQ6PF05 361 aa9.6□□□□□ -0.87
TRIM28-210ENST00000597618 C3P1Q6ZMU1 363 aa9.6□□□□□ -0.87
TRIM28-210ENST00000597618 CLEC17AQ6ZS10 378 aa9.6□□□□□ -0.87
TRIM28-210ENST00000597618 MICALCLQ6ZW33 695 aa9.6□□□□□ -0.87
TRIM28-210ENST00000597618 CCDC50Q8IVM0 306 aa9.6□□□□□ -0.87
TRIM28-210ENST00000597618 CDKL3Q8IVW4 592 aaPredicted RBP9.6□□□□□ -0.87
TRIM28-210ENST00000597618 HORMAD2Q8N7B1 307 aa9.6□□□□□ -0.87
TRIM28-210ENST00000597618 AMER3Q8N944 861 aa9.6□□□□□ -0.87
TRIM28-210ENST00000597618 OR2L3Q8NG85 312 aa9.6□□□□□ -0.87
TRIM28-210ENST00000597618 CFAP61Q8NHU2 1237 aa9.6□□□□□ -0.87
TRIM28-210ENST00000597618 STYXQ8WUJ0 223 aa9.6□□□□□ -0.87
TRIM28-210ENST00000597618 ASZ1Q8WWH4 475 aa9.6□□□□□ -0.87
TRIM28-210ENST00000597618 METTL21AQ8WXB1 218 aa9.6□□□□□ -0.87
TRIM28-210ENST00000597618 SIGLEC12Q96PQ1 595 aa9.6□□□□□ -0.87
TRIM28-210ENST00000597618 TTC1Q99614 292 aa9.6□□□□□ -0.87
TRIM28-210ENST00000597618 MIPEPQ99797 713 aa9.6□□□□□ -0.87
TRIM28-210ENST00000597618 C10orf88Q9H8K7 445 aa9.6□□□□□ -0.87
TRIM28-210ENST00000597618 SLC24A3Q9HC58 644 aa9.6□□□□□ -0.87
TRIM28-210ENST00000597618 STOX2Q9P2F5 926 aaPredicted RBP9.6□□□□□ -0.87
TRIM28-210ENST00000597618 KCNN3Q9UGI6 736 aa9.6□□□□□ -0.87
TRIM28-210ENST00000597618 HYOU1Q9Y4L1 999 aa9.6□□□□□ -0.87
TRIM28-210ENST00000597618 MRFAP1Q9Y605 127 aa9.6□□□□□ -0.87
TRIM28-210ENST00000597618 NSD1Q96L73 2696 aaPredicted RBP9.6□□□□□ -0.87
TRIM28-210ENST00000597618 OR2A25A4D2G3 310 aa9.59□□□□□ -0.87
TRIM28-210ENST00000597618 NRP2O60462 931 aa9.59□□□□□ -0.87
TRIM28-210ENST00000597618 GPC4O75487 556 aa9.59□□□□□ -0.87
TRIM28-210ENST00000597618 SEC24DO94855 1032 aaPredicted RBP9.59□□□□□ -0.87
TRIM28-210ENST00000597618 SUN1O94901 812 aa9.59□□□□□ -0.87
TRIM28-210ENST00000597618 SLCO2B1O94956 709 aa9.59□□□□□ -0.87
TRIM28-210ENST00000597618 APOA4P06727 396 aa9.59□□□□□ -0.87
TRIM28-210ENST00000597618 ZNF24P17028 368 aa9.59□□□□□ -0.87
TRIM28-210ENST00000597618 PSMB5P28074 263 aa9.59□□□□□ -0.87
TRIM28-210ENST00000597618 MSX1P28360 303 aa9.59□□□□□ -0.87
TRIM28-210ENST00000597618 CCR7P32248 378 aa9.59□□□□□ -0.87
TRIM28-210ENST00000597618 HSF1Q00613 529 aa9.59□□□□□ -0.87
TRIM28-210ENST00000597618 SPARCL1Q14515 664 aa9.59□□□□□ -0.87
TRIM28-210ENST00000597618 TMED2Q15363 201 aa9.59□□□□□ -0.87
TRIM28-210ENST00000597618 MEP1AQ16819 746 aa9.59□□□□□ -0.87
TRIM28-210ENST00000597618 ASTE1Q2TB18 679 aaPredicted RBP9.59□□□□□ -0.87
TRIM28-210ENST00000597618 BTBD16Q32M84 506 aa9.59□□□□□ -0.87
TRIM28-210ENST00000597618 CCDC181Q5TID7 509 aa9.59□□□□□ -0.87
TRIM28-210ENST00000597618 GARNL3Q5VVW2 1013 aa9.59□□□□□ -0.87
TRIM28-210ENST00000597618 CES4AQ5XG92 561 aa9.59□□□□□ -0.87
TRIM28-210ENST00000597618 H3F3CQ6NXT2 135 aa9.59□□□□□ -0.87
TRIM28-210ENST00000597618 BBS12Q6ZW61 710 aa9.59□□□□□ -0.87
TRIM28-210ENST00000597618 VRK3Q8IV63 474 aa9.59□□□□□ -0.87
TRIM28-210ENST00000597618 ZC3H7AQ8IWR0 971 aaKnown RBP9.59□□□□□ -0.87
TRIM28-210ENST00000597618 KATNAL2Q8IYT4 538 aa9.59□□□□□ -0.87
TRIM28-210ENST00000597618 TAB3Q8N5C8 712 aaPredicted RBP9.59□□□□□ -0.87
TRIM28-210ENST00000597618 CSNK1A1LQ8N752 337 aa9.59□□□□□ -0.87
TRIM28-210ENST00000597618 HMGCLL1Q8TB92 370 aa9.59□□□□□ -0.87
TRIM28-210ENST00000597618 ASB5Q8WWX0 329 aa9.59□□□□□ -0.87
TRIM28-210ENST00000597618 RAD51AP1Q96B01 352 aa9.59□□□□□ -0.87
TRIM28-210ENST00000597618 MMABQ96EY8 250 aaPredicted RBP9.59□□□□□ -0.87
TRIM28-210ENST00000597618 SPATA13Q96N96 652 aa9.59□□□□□ -0.87
TRIM28-210ENST00000597618 HES7Q9BYE0 225 aa9.59□□□□□ -0.87
TRIM28-210ENST00000597618 NPDC1Q9NQX5 325 aaPredicted RBP9.59□□□□□ -0.87
TRIM28-210ENST00000597618 C19orf25Q9UFG5 118 aaPredicted RBP9.59□□□□□ -0.87
TRIM28-210ENST00000597618 PRRC2AP48634 2157 aaKnown RBP9.58□□□□□ -0.88
TRIM28-210ENST00000597618 JMJD1CQ15652 2540 aa9.58□□□□□ -0.88
TRIM28-210ENST00000597618 AKAP6Q13023 2319 aa9.58□□□□□ -0.88
TRIM28-210ENST00000597618 H0YGG7 62 aa9.58□□□□□ -0.88
TRIM28-210ENST00000597618 AKR1B10O60218 316 aa9.58□□□□□ -0.88
TRIM28-210ENST00000597618 OR1I1O60431 355 aa9.58□□□□□ -0.88
TRIM28-210ENST00000597618 ZWINTO95229 277 aa9.58□□□□□ -0.88
TRIM28-210ENST00000597618 FOSL1P15407 271 aa9.58□□□□□ -0.88
TRIM28-210ENST00000597618 PSMA3P25788 255 aa9.58□□□□□ -0.88
TRIM28-210ENST00000597618 CHRNB4P30926 498 aa9.58□□□□□ -0.88
TRIM28-210ENST00000597618 FOXN2P32314 431 aa9.58□□□□□ -0.88
TRIM28-210ENST00000597618 CD96P40200 585 aa9.58□□□□□ -0.88
TRIM28-210ENST00000597618 ARF3P61204 181 aaPredicted RBP9.58□□□□□ -0.88
TRIM28-210ENST00000597618 TFF3Q07654 80 aa9.58□□□□□ -0.88
TRIM28-210ENST00000597618 MYBPHQ13203 477 aa9.58□□□□□ -0.88
TRIM28-210ENST00000597618 POU6F1Q14863 301 aa9.58□□□□□ -0.88
TRIM28-210ENST00000597618 FCRLBQ6BAA4 426 aa9.58□□□□□ -0.88
TRIM28-210ENST00000597618 SPINK14Q6IE38 97 aa9.58□□□□□ -0.88
TRIM28-210ENST00000597618 GALNTL5Q7Z4T8 443 aa9.58□□□□□ -0.88
TRIM28-210ENST00000597618 CPEB2Q7Z5Q1 589 aaKnown RBP9.58□□□□□ -0.88
TRIM28-210ENST00000597618 PNPLA5Q7Z6Z6 429 aaPredicted RBP9.58□□□□□ -0.88
TRIM28-210ENST00000597618 CHERPQ8IWX8 916 aaKnown RBP9.58□□□□□ -0.88
TRIM28-210ENST00000597618 DMRTC2Q8IXT2 367 aaPredicted RBP9.58□□□□□ -0.88
TRIM28-210ENST00000597618 KLHDC8BQ8IXV7 354 aa9.58□□□□□ -0.88
TRIM28-210ENST00000597618 RCOR2Q8IZ40 523 aa9.58□□□□□ -0.88
TRIM28-210ENST00000597618 OR2A1Q8NGT9 310 aa9.58□□□□□ -0.88
TRIM28-210ENST00000597618 GSDMBQ8TAX9 411 aa9.58□□□□□ -0.88
TRIM28-210ENST00000597618 NRGNQ92686 78 aa9.58□□□□□ -0.88
Retrieved 100 of 20,778 RNA–protein pairs in 72.9 ms