RNA–Protein interactions for RNA: ENST00000594243.1

UPF1-202, Transcript of UPF1, RNA helicase and ATPase, humanhuman

TSL 3

Gene UPF1, Length 683 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF1-202ENST00000594243 CROTQ9UKG9 612 aa14.41□□□□□ -0.1
UPF1-202ENST00000594243 TLK1Q9UKI8 766 aa14.41□□□□□ -0.1
UPF1-202ENST00000594243 ACOT9Q9Y305 439 aa14.41□□□□□ -0.1
UPF1-202ENST00000594243 A0A087X1B8 175 aa14.4□□□□□ -0.1
UPF1-202ENST00000594243 IGKV1-8A0A0C4DH67 115 aa14.4□□□□□ -0.1
UPF1-202ENST00000594243 A0A0J9YVX5 310 aa14.4□□□□□ -0.1
UPF1-202ENST00000594243 C21orf140B9A014 251 aa14.4□□□□□ -0.1
UPF1-202ENST00000594243 POC1B-GALNT4F8VUJ3 575 aa14.4□□□□□ -0.1
UPF1-202ENST00000594243 RIPK2O43353 540 aa14.4□□□□□ -0.1
UPF1-202ENST00000594243 CTSVO60911 334 aa14.4□□□□□ -0.1
UPF1-202ENST00000594243 KRT38O76015 456 aa14.4□□□□□ -0.1
UPF1-202ENST00000594243 SLU7O95391 586 aaKnown RBP14.4□□□□□ -0.1
UPF1-202ENST00000594243 ABHD2P08910 425 aa14.4□□□□□ -0.1
UPF1-202ENST00000594243 FAM153BP0C7A2 387 aa14.4□□□□□ -0.1
UPF1-202ENST00000594243 SLC35E2BP0CK96 405 aa14.4□□□□□ -0.1
UPF1-202ENST00000594243 EZRP15311 586 aaKnown RBP14.4□□□□□ -0.1
UPF1-202ENST00000594243 NPPBP16860 134 aa14.4□□□□□ -0.1
UPF1-202ENST00000594243 CNTFP26441 200 aa14.4□□□□□ -0.1
UPF1-202ENST00000594243 TNFRSF8P28908 595 aa14.4□□□□□ -0.1
UPF1-202ENST00000594243 TYK2P29597 1187 aa14.4□□□□□ -0.1
UPF1-202ENST00000594243 RORAP35398 523 aa14.4□□□□□ -0.1
UPF1-202ENST00000594243 RPS15P62841 145 aaKnown RBP14.4□□□□□ -0.1
UPF1-202ENST00000594243 MC1RQ01726 317 aa14.4□□□□□ -0.1
UPF1-202ENST00000594243 GPS2Q13227 327 aa14.4□□□□□ -0.1
UPF1-202ENST00000594243 CSHL1Q14406 222 aa14.4□□□□□ -0.1
UPF1-202ENST00000594243 GRM7Q14831 915 aa14.4□□□□□ -0.1
UPF1-202ENST00000594243 TGFBIQ15582 683 aa14.4□□□□□ -0.1
UPF1-202ENST00000594243 FAM214AQ32MH5 1076 aa14.4□□□□□ -0.1
UPF1-202ENST00000594243 FAM153CQ494X1 144 aa14.4□□□□□ -0.1
UPF1-202ENST00000594243 UBAP2Q5T6F2 1119 aaKnown RBP14.4□□□□□ -0.1
UPF1-202ENST00000594243 LGSNQ5TDP6 509 aa14.4□□□□□ -0.1
UPF1-202ENST00000594243 YOD1Q5VVQ6 348 aaPredicted RBP14.4□□□□□ -0.1
UPF1-202ENST00000594243 ZNF425Q6IV72 752 aa14.4□□□□□ -0.1
UPF1-202ENST00000594243 RHBDD2Q6NTF9 364 aa14.4□□□□□ -0.1
UPF1-202ENST00000594243 FAM199XQ6PEV8 388 aaPredicted RBP14.4□□□□□ -0.1
UPF1-202ENST00000594243 ZNF517Q6ZMY9 492 aaPredicted RBP14.4□□□□□ -0.1
UPF1-202ENST00000594243 ADCK2Q7Z695 626 aa14.4□□□□□ -0.1
UPF1-202ENST00000594243 CMC1Q7Z7K0 106 aa14.4□□□□□ -0.1
UPF1-202ENST00000594243 PAQR7Q86WK9 346 aa14.4□□□□□ -0.1
UPF1-202ENST00000594243 C17orf64Q86WR6 236 aa14.4□□□□□ -0.1
UPF1-202ENST00000594243 SPATA6LQ8N4H0 392 aa14.4□□□□□ -0.1
UPF1-202ENST00000594243 TTC29Q8NA56 475 aaPredicted RBP14.4□□□□□ -0.1
UPF1-202ENST00000594243 STAG3L4Q8TBR4 150 aa14.4□□□□□ -0.1
UPF1-202ENST00000594243 PAFAH2Q99487 392 aa14.4□□□□□ -0.1
UPF1-202ENST00000594243 GPR87Q9BY21 358 aa14.4□□□□□ -0.1
UPF1-202ENST00000594243 NMRAL1Q9HBL8 299 aa14.4□□□□□ -0.1
UPF1-202ENST00000594243 ENAMQ9NRM1 1142 aa14.4□□□□□ -0.1
UPF1-202ENST00000594243 TXLNGQ9NUQ3 528 aa14.4□□□□□ -0.1
UPF1-202ENST00000594243 PCMTD2Q9NV79 361 aa14.4□□□□□ -0.1
UPF1-202ENST00000594243 ZNF180Q9UJW8 692 aa14.4□□□□□ -0.1
UPF1-202ENST00000594243 PCDHGA4Q9Y5G9 962 aa14.4□□□□□ -0.1
UPF1-202ENST00000594243 SDK2Q58EX2 2172 aa14.4□□□□□ -0.1
UPF1-202ENST00000594243 CELSR3Q9NYQ7 3312 aa14.4□□□□□ -0.11
UPF1-202ENST00000594243 ATRXP46100 2492 aa14.39□□□□□ -0.11
UPF1-202ENST00000594243 URB1O60287 2271 aaKnown RBP14.39□□□□□ -0.11
UPF1-202ENST00000594243 HMX2A2RU54 273 aa14.39□□□□□ -0.11
UPF1-202ENST00000594243 ZNF891A8MT65 544 aaPredicted RBP14.39□□□□□ -0.11
UPF1-202ENST00000594243 H7BY64 318 aa14.39□□□□□ -0.11
UPF1-202ENST00000594243 CTSBP07858 339 aa14.39□□□□□ -0.11
UPF1-202ENST00000594243 LTA4HP09960 611 aaKnown RBP14.39□□□□□ -0.11
UPF1-202ENST00000594243 SERPINB8P50452 374 aa14.39□□□□□ -0.11
UPF1-202ENST00000594243 VSX2P58304 361 aaPredicted RBP14.39□□□□□ -0.11
UPF1-202ENST00000594243 BMPR2Q13873 1038 aa14.39□□□□□ -0.11
UPF1-202ENST00000594243 TAF1BQ53T94 588 aaPredicted RBP14.39□□□□□ -0.11
UPF1-202ENST00000594243 CDKL4Q5MAI5 379 aa14.39□□□□□ -0.11
UPF1-202ENST00000594243 WASHC2DQ5SRD0 308 aa14.39□□□□□ -0.11
UPF1-202ENST00000594243 FRMPD2BQ6IN97 320 aa14.39□□□□□ -0.11
UPF1-202ENST00000594243 GPSM1Q86YR5 675 aa14.39□□□□□ -0.11
UPF1-202ENST00000594243 CNPY4Q8N129 248 aa14.39□□□□□ -0.11
UPF1-202ENST00000594243 TCAIMQ8N3R3 496 aa14.39□□□□□ -0.11
UPF1-202ENST00000594243 UHMK1Q8TAS1 419 aaKnown RBP14.39□□□□□ -0.11
UPF1-202ENST00000594243 PROKR1Q8TCW9 393 aa14.39□□□□□ -0.11
UPF1-202ENST00000594243 KIAA1191Q96A73 305 aa14.39□□□□□ -0.11
UPF1-202ENST00000594243 PYCR2Q96C36 320 aa14.39□□□□□ -0.11
UPF1-202ENST00000594243 ZNF285Q96NJ3 590 aa14.39□□□□□ -0.11
UPF1-202ENST00000594243 PRAP1Q96NZ9 151 aa14.39□□□□□ -0.11
UPF1-202ENST00000594243 C17orf62Q9BQA9 187 aa14.39□□□□□ -0.11
UPF1-202ENST00000594243 UNKQ9C0B0 810 aaKnown RBP14.39□□□□□ -0.11
UPF1-202ENST00000594243 AKIRIN1Q9H9L7 192 aaPredicted RBP14.39□□□□□ -0.11
UPF1-202ENST00000594243 PCDHGA6Q9Y5G7 932 aa14.39□□□□□ -0.11
UPF1-202ENST00000594243 EXOC1LA0A1B0GW35 172 aa14.38□□□□□ -0.11
UPF1-202ENST00000594243 CCDC189A1A4V9 331 aa14.38□□□□□ -0.11
UPF1-202ENST00000594243 FITM1A5D6W6 292 aa14.38□□□□□ -0.11
UPF1-202ENST00000594243 TXNDC9O14530 226 aa14.38□□□□□ -0.11
UPF1-202ENST00000594243 TERTO14746 1132 aaKnown RBP14.38□□□□□ -0.11
UPF1-202ENST00000594243 KATNA1O75449 491 aa14.38□□□□□ -0.11
UPF1-202ENST00000594243 RECKO95980 971 aa14.38□□□□□ -0.11
UPF1-202ENST00000594243 EIF2S1P05198 315 aaKnown RBP14.38□□□□□ -0.11
UPF1-202ENST00000594243 C2P06681 752 aa14.38□□□□□ -0.11
UPF1-202ENST00000594243 CD63P08962 238 aa14.38□□□□□ -0.11
UPF1-202ENST00000594243 RAB40ALP0C0E4 278 aa14.38□□□□□ -0.11
UPF1-202ENST00000594243 ALAS2P22557 587 aa14.38□□□□□ -0.11
UPF1-202ENST00000594243 GRK3P35626 688 aa14.38□□□□□ -0.11
UPF1-202ENST00000594243 DCDP81605 110 aaKnown RBP14.38□□□□□ -0.11
UPF1-202ENST00000594243 DNASE1L3Q13609 305 aa14.38□□□□□ -0.11
UPF1-202ENST00000594243 SLC29A2Q14542 456 aa14.38□□□□□ -0.11
UPF1-202ENST00000594243 FAM83EQ2M2I3 478 aa14.38□□□□□ -0.11
UPF1-202ENST00000594243 ZXDCQ2QGD7 858 aaPredicted RBP14.38□□□□□ -0.11
UPF1-202ENST00000594243 PTCHD3Q3KNS1 767 aa14.38□□□□□ -0.11
UPF1-202ENST00000594243 CRTC2Q53ET0 693 aaPredicted RBP14.38□□□□□ -0.11
Retrieved 100 of 20,778 RNA–protein pairs in 29.1 ms