RNA–Protein interactions for RNA: ENST00000576019.5

VPS53-219, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 3

Gene VPS53, Length 613 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-219ENST00000576019 OPN1MW3P0DN78 364 aa5.58□□□□□ -1.52
VPS53-219ENST00000576019 NR2F2P24468 414 aa5.58□□□□□ -1.52
VPS53-219ENST00000576019 PSMB4P28070 264 aa5.58□□□□□ -1.52
VPS53-219ENST00000576019 HIBADHP31937 336 aaKnown RBP5.58□□□□□ -1.52
VPS53-219ENST00000576019 ARCN1P48444 511 aaKnown RBP5.58□□□□□ -1.52
VPS53-219ENST00000576019 PITPNBP48739 271 aa5.58□□□□□ -1.52
VPS53-219ENST00000576019 SLURP1P55000 103 aa5.58□□□□□ -1.52
VPS53-219ENST00000576019 GP2P55259 537 aaKnown RBP5.58□□□□□ -1.52
VPS53-219ENST00000576019 ACTR1AP61163 376 aa5.58□□□□□ -1.52
VPS53-219ENST00000576019 CYP4F2P78329 520 aa5.58□□□□□ -1.52
VPS53-219ENST00000576019 FOLH1Q04609 750 aa5.58□□□□□ -1.52
VPS53-219ENST00000576019 PTPRRQ15256 657 aa5.58□□□□□ -1.52
VPS53-219ENST00000576019 USP39Q53GS9 565 aaKnown RBP5.58□□□□□ -1.52
VPS53-219ENST00000576019 HS1BP3Q53T59 392 aa5.58□□□□□ -1.52
VPS53-219ENST00000576019 LRRC73Q5JTD7 316 aa5.58□□□□□ -1.52
VPS53-219ENST00000576019 DCAF12L2Q5VW00 463 aa5.58□□□□□ -1.52
VPS53-219ENST00000576019 ARMC6Q6NXE6 501 aa5.58□□□□□ -1.52
VPS53-219ENST00000576019 MTSS1LQ765P7 747 aa5.58□□□□□ -1.52
VPS53-219ENST00000576019 LINGO2Q7L985 606 aa5.58□□□□□ -1.52
VPS53-219ENST00000576019 TERB1Q8NA31 727 aa5.58□□□□□ -1.52
VPS53-219ENST00000576019 CLEC1AQ8NC01 280 aa5.58□□□□□ -1.52
VPS53-219ENST00000576019 CMASQ8NFW8 434 aaPredicted RBP5.58□□□□□ -1.52
VPS53-219ENST00000576019 CHURC1Q8WUH1 139 aa5.58□□□□□ -1.52
VPS53-219ENST00000576019 CTNNBL1Q8WYA6 563 aaPredicted RBP5.58□□□□□ -1.52
VPS53-219ENST00000576019 RAD54LQ92698 747 aa5.58□□□□□ -1.52
VPS53-219ENST00000576019 FUBP1Q96AE4 644 aaKnown RBP5.58□□□□□ -1.52
VPS53-219ENST00000576019 DTD2Q96FN9 168 aa5.58□□□□□ -1.52
VPS53-219ENST00000576019 VCPIP1Q96JH7 1222 aa5.58□□□□□ -1.52
VPS53-219ENST00000576019 ZNF570Q96NI8 536 aa5.58□□□□□ -1.52
VPS53-219ENST00000576019 PANX3Q96QZ0 392 aa5.58□□□□□ -1.52
VPS53-219ENST00000576019 SEMA3CQ99985 751 aa5.58□□□□□ -1.52
VPS53-219ENST00000576019 ERP44Q9BS26 406 aa5.58□□□□□ -1.52
VPS53-219ENST00000576019 ARRDC1-AS1Q9H2J1 176 aa5.58□□□□□ -1.52
VPS53-219ENST00000576019 FAM118AQ9NWS6 357 aa5.58□□□□□ -1.52
VPS53-219ENST00000576019 CISD1Q9NZ45 108 aaKnown RBP5.58□□□□□ -1.52
VPS53-219ENST00000576019 OR6C3Q9NZP0 311 aa5.58□□□□□ -1.52
VPS53-219ENST00000576019 OR14J1Q9UGF5 321 aa5.58□□□□□ -1.52
VPS53-219ENST00000576019 CCPG1Q9ULG6 757 aa5.58□□□□□ -1.52
VPS53-219ENST00000576019 NUDCQ9Y266 331 aa5.58□□□□□ -1.52
VPS53-219ENST00000576019 OAS3Q9Y6K5 1087 aaKnown RBP5.58□□□□□ -1.52
VPS53-219ENST00000576019 CACNA1EQ15878 2313 aa5.58□□□□□ -1.52
VPS53-219ENST00000576019 CELSR2Q9HCU4 2923 aa5.58□□□□□ -1.52
VPS53-219ENST00000576019 ZMYM2Q9UBW7 1377 aa5.57□□□□□ -1.52
VPS53-219ENST00000576019 SCN10AQ9Y5Y9 1956 aa5.57□□□□□ -1.52
VPS53-219ENST00000576019 ICE1Q9Y2F5 2266 aa5.57□□□□□ -1.52
VPS53-219ENST00000576019 MAGEA13PA6NCF6 341 aa5.57□□□□□ -1.52
VPS53-219ENST00000576019 ZSCAN5CA6NGD5 496 aaPredicted RBP5.57□□□□□ -1.52
VPS53-219ENST00000576019 SHISA7A6NL88 538 aa5.57□□□□□ -1.52
VPS53-219ENST00000576019 IKBKBO14920 756 aa5.57□□□□□ -1.52
VPS53-219ENST00000576019 PEX1O43933 1283 aa5.57□□□□□ -1.52
VPS53-219ENST00000576019 GCATO75600 419 aa5.57□□□□□ -1.52
VPS53-219ENST00000576019 RGS11O94810 467 aa5.57□□□□□ -1.52
VPS53-219ENST00000576019 ASNSP08243 561 aa5.57□□□□□ -1.52
VPS53-219ENST00000576019 ITGAMP11215 1152 aa5.57□□□□□ -1.52
VPS53-219ENST00000576019 AREGP15514 252 aa5.57□□□□□ -1.52
VPS53-219ENST00000576019 DDX5P17844 614 aaKnown RBP5.57□□□□□ -1.52
VPS53-219ENST00000576019 ZFP36P26651 326 aaKnown RBP5.57□□□□□ -1.52
VPS53-219ENST00000576019 HOXD9P28356 352 aaPredicted RBP5.57□□□□□ -1.52
VPS53-219ENST00000576019 GYG1P46976 350 aa5.57□□□□□ -1.52
VPS53-219ENST00000576019 SMSP52788 366 aa5.57□□□□□ -1.52
VPS53-219ENST00000576019 PMP22Q01453 160 aa5.57□□□□□ -1.52
VPS53-219ENST00000576019 MTA1Q13330 715 aa5.57□□□□□ -1.52
VPS53-219ENST00000576019 FZD5Q13467 585 aa5.57□□□□□ -1.52
VPS53-219ENST00000576019 PFKFB3Q16875 520 aaPredicted RBP5.57□□□□□ -1.52
VPS53-219ENST00000576019 BOLA3Q53S33 107 aa5.57□□□□□ -1.52
VPS53-219ENST00000576019 OR6B2Q6IFH4 312 aa5.57□□□□□ -1.52
VPS53-219ENST00000576019 NEK5Q6P3R8 708 aa5.57□□□□□ -1.52
VPS53-219ENST00000576019 FIGLAQ6QHK4 219 aa5.57□□□□□ -1.52
VPS53-219ENST00000576019 VSTM1Q6UX27 236 aa5.57□□□□□ -1.52
VPS53-219ENST00000576019 CCNI2Q6ZMN8 369 aaPredicted RBP5.57□□□□□ -1.52
VPS53-219ENST00000576019 CYB5R4Q7L1T6 521 aa5.57□□□□□ -1.52
VPS53-219ENST00000576019 CACNA2D4Q7Z3S7 1137 aa5.57□□□□□ -1.52
VPS53-219ENST00000576019 CIR1Q86X95 450 aaPredicted RBP5.57□□□□□ -1.52
VPS53-219ENST00000576019 FOXP4Q8IVH2 680 aaPredicted RBP5.57□□□□□ -1.52
VPS53-219ENST00000576019 UEVLDQ8IX04 471 aa5.57□□□□□ -1.52
VPS53-219ENST00000576019 ZDHHC23Q8IYP9 409 aa5.57□□□□□ -1.52
VPS53-219ENST00000576019 BOLLQ8N9W6 283 aaKnown RBP5.57□□□□□ -1.52
VPS53-219ENST00000576019 FAM47BQ8NA70 645 aa5.57□□□□□ -1.52
VPS53-219ENST00000576019 DEFB124Q8NES8 71 aa5.57□□□□□ -1.52
VPS53-219ENST00000576019 HM13Q8TCT9 377 aa5.57□□□□□ -1.52
VPS53-219ENST00000576019 SNAPC3Q92966 411 aa5.57□□□□□ -1.52
VPS53-219ENST00000576019 SLC25A28Q96A46 364 aa5.57□□□□□ -1.52
VPS53-219ENST00000576019 ALG14Q96F25 216 aa5.57□□□□□ -1.52
VPS53-219ENST00000576019 ZNF419Q96HQ0 510 aaPredicted RBP5.57□□□□□ -1.52
VPS53-219ENST00000576019 SPATA33Q96N06 139 aa5.57□□□□□ -1.52
VPS53-219ENST00000576019 CPNE1Q99829 537 aa5.57□□□□□ -1.52
VPS53-219ENST00000576019 EDEM2Q9BV94 578 aa5.57□□□□□ -1.52
VPS53-219ENST00000576019 LHPPQ9H008 270 aa5.57□□□□□ -1.52
VPS53-219ENST00000576019 CDT1Q9H211 546 aa5.57□□□□□ -1.52
VPS53-219ENST00000576019 MVB12BQ9H7P6 319 aa5.57□□□□□ -1.52
VPS53-219ENST00000576019 PNPLA3Q9NST1 481 aa5.57□□□□□ -1.52
VPS53-219ENST00000576019 SERTAD4Q9NUC0 356 aa5.57□□□□□ -1.52
VPS53-219ENST00000576019 GAR1Q9NY12 217 aaKnown RBP5.57□□□□□ -1.52
VPS53-219ENST00000576019 DBNLQ9UJU6 430 aaKnown RBP5.57□□□□□ -1.52
VPS53-219ENST00000576019 WDR37Q9Y2I8 494 aa5.57□□□□□ -1.52
VPS53-219ENST00000576019 KIF26AQ9ULI4 1882 aaPredicted RBP5.57□□□□□ -1.52
VPS53-219ENST00000576019 PCNX2A6NKB5 2137 aa5.57□□□□□ -1.52
VPS53-219ENST00000576019 NIPBLQ6KC79 2804 aaeCLIP5.56□□□□□ -1.52
VPS53-219ENST00000576019 C2orf92A0A1B0GVN3 265 aa5.56□□□□□ -1.52
VPS53-219ENST00000576019 FEZF1A0PJY2 475 aa5.56□□□□□ -1.52
Retrieved 100 of 20,778 RNA–protein pairs in 58.7 ms