RNA–Protein interactions for RNA: ENST00000574029.5

VPS53-216, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 4 BASIC

Gene VPS53, Length 585 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-216ENST00000574029 ARG2P78540 354 aa20.05■□□□□ 0.8
VPS53-216ENST00000574029 DSG2Q14126 1118 aa20.05■□□□□ 0.8
VPS53-216ENST00000574029 CCNG2Q16589 344 aa20.05■□□□□ 0.8
VPS53-216ENST00000574029 TYSND1Q2T9J0 566 aa20.05■□□□□ 0.8
VPS53-216ENST00000574029 EEF1AKMT2Q5JPI9 291 aaKnown RBP20.05■□□□□ 0.8
VPS53-216ENST00000574029 C4orf22Q6V702 233 aa20.05■□□□□ 0.8
VPS53-216ENST00000574029 PAQR7Q86WK9 346 aa20.05■□□□□ 0.8
VPS53-216ENST00000574029 OR9A1PQ8NGU1 263 aa20.05■□□□□ 0.8
VPS53-216ENST00000574029 BRIX1Q8TDN6 353 aaKnown RBP20.05■□□□□ 0.8
VPS53-216ENST00000574029 MFSD3Q96ES6 412 aa20.05■□□□□ 0.8
VPS53-216ENST00000574029 PLCD4Q9BRC7 762 aa20.05■□□□□ 0.8
VPS53-216ENST00000574029 KIFC1Q9BW19 673 aa20.05■□□□□ 0.8
VPS53-216ENST00000574029 ACAT2Q9BWD1 397 aa20.05■□□□□ 0.8
VPS53-216ENST00000574029 SYNPO2LQ9H987 977 aa20.05■□□□□ 0.8
VPS53-216ENST00000574029 PTGFRNQ9P2B2 879 aa20.05■□□□□ 0.8
VPS53-216ENST00000574029 ENTPD4Q9Y227 616 aa20.05■□□□□ 0.8
VPS53-216ENST00000574029 IGHV1-45A0A0A0MS14 117 aa20.04■□□□□ 0.8
VPS53-216ENST00000574029 ARHGEF33A8MVX0 844 aa20.04■□□□□ 0.8
VPS53-216ENST00000574029 H3BMM5 538 aa20.04■□□□□ 0.8
VPS53-216ENST00000574029 MYO1CO00159 1063 aa20.04■□□□□ 0.8
VPS53-216ENST00000574029 PRPF4O43172 522 aaKnown RBP eCLIP20.04■□□□□ 0.81e-8■■□□□ 11.6
VPS53-216ENST00000574029 ZG16O60844 167 aa20.04■□□□□ 0.8
VPS53-216ENST00000574029 VPS26AO75436 327 aa20.04■□□□□ 0.8
VPS53-216ENST00000574029 VAPBO95292 243 aa20.04■□□□□ 0.8
VPS53-216ENST00000574029 SERPINA7P05543 415 aa20.04■□□□□ 0.8
VPS53-216ENST00000574029 TNFSF10P50591 281 aa20.04■□□□□ 0.8
VPS53-216ENST00000574029 TDGF1P3P51864 188 aa20.04■□□□□ 0.8
VPS53-216ENST00000574029 ADARP55265 1226 aaKnown RBP20.04■□□□□ 0.8
VPS53-216ENST00000574029 ANKRD20A4Q4UJ75 823 aa20.04■□□□□ 0.8
VPS53-216ENST00000574029 RNF187Q5TA31 235 aaPredicted RBP20.04■□□□□ 0.8
VPS53-216ENST00000574029 MRNIPQ6NTE8 343 aa20.04■□□□□ 0.8
VPS53-216ENST00000574029 DRICH1Q6PGQ1 229 aaPredicted RBP20.04■□□□□ 0.8
VPS53-216ENST00000574029 SDCCAG8Q86SQ7 713 aaPredicted RBP20.04■□□□□ 0.8
VPS53-216ENST00000574029 OTUD6BQ8N6M0 293 aa20.04■□□□□ 0.8
VPS53-216ENST00000574029 SMPDL3AQ92484 453 aa20.04■□□□□ 0.8
VPS53-216ENST00000574029 HAS2Q92819 552 aa20.04■□□□□ 0.8
VPS53-216ENST00000574029 TAAR6Q96RI8 345 aa20.04■□□□□ 0.8
VPS53-216ENST00000574029 TCF12Q99081 682 aa20.04■□□□□ 0.8
VPS53-216ENST00000574029 MRPS30Q9NP92 439 aaKnown RBP20.04■□□□□ 0.8
VPS53-216ENST00000574029 C14orf105Q9NVL8 296 aa20.04■□□□□ 0.8
VPS53-216ENST00000574029 PLA2G3Q9NZ20 509 aa20.04■□□□□ 0.8
VPS53-216ENST00000574029 TRPC4Q9UBN4 977 aa20.04■□□□□ 0.8
VPS53-216ENST00000574029 TSR3Q9UJK0 312 aaKnown RBP20.04■□□□□ 0.8
VPS53-216ENST00000574029 RUVBL1Q9Y265 456 aaKnown RBP20.04■□□□□ 0.8
VPS53-216ENST00000574029 DRG1Q9Y295 367 aaKnown RBP20.04■□□□□ 0.8
VPS53-216ENST00000574029 CENPEQ02224 2701 aa20.04■□□□□ 0.8
VPS53-216ENST00000574029 CREBBPQ92793 2442 aa20.03■□□□□ 0.8
VPS53-216ENST00000574029 TRAV17A0A0B4J275 112 aa20.03■□□□□ 0.8
VPS53-216ENST00000574029 IGKV1-8A0A0C4DH67 115 aa20.03■□□□□ 0.8
VPS53-216ENST00000574029 DYTNA2CJ06 578 aa20.03■□□□□ 0.8
VPS53-216ENST00000574029 PCDH17O14917 1159 aa20.03■□□□□ 0.8
VPS53-216ENST00000574029 HNRNPRO43390 633 aaKnown RBP20.03■□□□□ 0.8
VPS53-216ENST00000574029 PSIP1O75475 530 aaKnown RBP20.03■□□□□ 0.8
VPS53-216ENST00000574029 BMP10O95393 424 aa20.03■□□□□ 0.8
VPS53-216ENST00000574029 ESR1P03372 595 aa20.03■□□□□ 0.8
VPS53-216ENST00000574029 CXCR2P25025 360 aa20.03■□□□□ 0.8
VPS53-216ENST00000574029 MGAT1P26572 445 aa20.03■□□□□ 0.8
VPS53-216ENST00000574029 TNFRSF8P28908 595 aa20.03■□□□□ 0.8
VPS53-216ENST00000574029 SLC26A3P40879 764 aa20.03■□□□□ 0.8
VPS53-216ENST00000574029 BASP1P80723 227 aaKnown RBP20.03■□□□□ 0.8
VPS53-216ENST00000574029 ARHGAP19Q14CB8 494 aa20.03■□□□□ 0.8
VPS53-216ENST00000574029 INAQ16352 499 aa20.03■□□□□ 0.8
VPS53-216ENST00000574029 GARNL3Q5VVW2 1013 aa20.03■□□□□ 0.8
VPS53-216ENST00000574029 ZNF425Q6IV72 752 aa20.03■□□□□ 0.8
VPS53-216ENST00000574029 SUSD1Q6UWL2 747 aa20.03■□□□□ 0.8
VPS53-216ENST00000574029 FJX1Q86VR8 437 aa20.03■□□□□ 0.8
VPS53-216ENST00000574029 ARHGEF39Q8N4T4 335 aa20.03■□□□□ 0.8
VPS53-216ENST00000574029 CSNK1A1LQ8N752 337 aa20.03■□□□□ 0.8
VPS53-216ENST00000574029 AMER3Q8N944 861 aa20.03■□□□□ 0.8
VPS53-216ENST00000574029 RELTQ969Z4 430 aa20.03■□□□□ 0.8
VPS53-216ENST00000574029 OR2A5Q96R48 311 aa20.03■□□□□ 0.8
VPS53-216ENST00000574029 TGIF2Q9GZN2 237 aa20.03■□□□□ 0.8
VPS53-216ENST00000574029 SYBUQ9NX95 663 aa20.03■□□□□ 0.8
VPS53-216ENST00000574029 GALPQ9UBC7 116 aa20.03■□□□□ 0.8
VPS53-216ENST00000574029 MRPS2Q9Y399 296 aaKnown RBP20.03■□□□□ 0.8
VPS53-216ENST00000574029 DIDO1Q9BTC0 2240 aaKnown RBP20.02■□□□□ 0.8
VPS53-216ENST00000574029 CNTRLQ7Z7A1 2325 aa20.02■□□□□ 0.8
VPS53-216ENST00000574029 LOC102723996A0A087X1L8 192 aa20.02■□□□□ 0.8
VPS53-216ENST00000574029 GOLGA8KD6RF30 607 aa20.02■□□□□ 0.8
VPS53-216ENST00000574029 GOLGA8TH3BQL2 631 aa20.02■□□□□ 0.8
VPS53-216ENST00000574029 FFAR3O14843 346 aa20.02■□□□□ 0.8
VPS53-216ENST00000574029 GPR42O15529 346 aa20.02■□□□□ 0.8
VPS53-216ENST00000574029 RPA3P35244 121 aaPredicted RBP20.02■□□□□ 0.8
VPS53-216ENST00000574029 RELAQ04206 551 aa20.02■□□□□ 0.8
VPS53-216ENST00000574029 EEF1A2Q05639 463 aaKnown RBP20.02■□□□□ 0.8
VPS53-216ENST00000574029 HKDC1Q2TB90 917 aa20.02■□□□□ 0.8
VPS53-216ENST00000574029 ACSBG2Q5FVE4 666 aa20.02■□□□□ 0.8
VPS53-216ENST00000574029 LRRC8BQ6P9F7 803 aa20.02■□□□□ 0.8
VPS53-216ENST00000574029 CES3Q6UWW8 571 aa20.02■□□□□ 0.8
VPS53-216ENST00000574029 RIPOR1Q6ZS17 1223 aa20.02■□□□□ 0.8
VPS53-216ENST00000574029 SIRT6Q8N6T7 355 aa20.02■□□□□ 0.8
VPS53-216ENST00000574029 NR4A3Q92570 626 aa20.02■□□□□ 0.8
VPS53-216ENST00000574029 MARVELD3Q96A59 401 aa20.02■□□□□ 0.8
VPS53-216ENST00000574029 FAM136AQ96C01 138 aa20.02■□□□□ 0.8
VPS53-216ENST00000574029 MAGEB10Q96LZ2 347 aaPredicted RBP20.02■□□□□ 0.8
VPS53-216ENST00000574029 YIPF2Q9BWQ6 316 aa20.02■□□□□ 0.8
VPS53-216ENST00000574029 MKKSQ9NPJ1 570 aaPredicted RBP20.02■□□□□ 0.8
VPS53-216ENST00000574029 IGSF5Q9NSI5 407 aa20.02■□□□□ 0.8
VPS53-216ENST00000574029 RIC8BQ9NVN3 520 aa20.02■□□□□ 0.8
VPS53-216ENST00000574029 SOX13Q9UN79 622 aa20.02■□□□□ 0.8
Retrieved 100 of 20,778 RNA–protein pairs in 64 ms