RNA–Protein interactions for RNA: ENST00000569406.5

CLK3-226, Transcript of CDC like kinase 3, humanhuman

TSL 2

Gene CLK3, Length 3,591 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-226ENST00000569406 B3GNT5Q9BYG0 378 aa10.56□□□□□ -0.72
CLK3-226ENST00000569406 ANKHQ9HCJ1 492 aa10.56□□□□□ -0.72
CLK3-226ENST00000569406 SPAG4Q9NPE6 437 aa10.56□□□□□ -0.72
CLK3-226ENST00000569406 AGPAT4Q9NRZ5 378 aa10.56□□□□□ -0.72
CLK3-226ENST00000569406 CMTM6Q9NX76 183 aa10.56□□□□□ -0.72
CLK3-226ENST00000569406 MTMR10Q9NXD2 777 aa10.56□□□□□ -0.72
CLK3-226ENST00000569406 MORF4L1Q9UBU8 362 aa10.56□□□□□ -0.72
CLK3-226ENST00000569406 PQLC2LA1A4F0 135 aa10.55□□□□□ -0.72
CLK3-226ENST00000569406 RRN3P2A6NIE6 340 aa10.55□□□□□ -0.72
CLK3-226ENST00000569406 POM121CA8CG34 1229 aa10.55□□□□□ -0.72
CLK3-226ENST00000569406 APOC4-APOC2K7ER74 178 aa10.55□□□□□ -0.72
CLK3-226ENST00000569406 M0QYV0 167 aa10.55□□□□□ -0.72
CLK3-226ENST00000569406 EEF2KO00418 725 aaKnown RBP10.55□□□□□ -0.72
CLK3-226ENST00000569406 SIGLEC6O43699 453 aa10.55□□□□□ -0.72
CLK3-226ENST00000569406 AKAP8O43823 692 aaKnown RBP10.55□□□□□ -0.72
CLK3-226ENST00000569406 APOC2P02655 101 aa10.55□□□□□ -0.72
CLK3-226ENST00000569406 ALPLP05186 524 aa10.55□□□□□ -0.72
CLK3-226ENST00000569406 CRHR1P34998 444 aa10.55□□□□□ -0.72
CLK3-226ENST00000569406 SLC7A2P52569 658 aa10.55□□□□□ -0.72
CLK3-226ENST00000569406 BCAR1P56945 870 aa10.55□□□□□ -0.72
CLK3-226ENST00000569406 GRB14Q14449 540 aa10.55□□□□□ -0.72
CLK3-226ENST00000569406 USP51Q70EK9 711 aa10.55□□□□□ -0.72
CLK3-226ENST00000569406 ZNF467Q7Z7K2 595 aaPredicted RBP10.55□□□□□ -0.72
CLK3-226ENST00000569406 C12orf40Q86WS4 652 aa10.55□□□□□ -0.72
CLK3-226ENST00000569406 KRT78Q8N1N4 520 aa10.55□□□□□ -0.72
CLK3-226ENST00000569406 C9orf62Q8N4C0 152 aa10.55□□□□□ -0.72
CLK3-226ENST00000569406 IL17RCQ8NAC3 791 aa10.55□□□□□ -0.72
CLK3-226ENST00000569406 SFT2D1Q8WV19 159 aa10.55□□□□□ -0.72
CLK3-226ENST00000569406 RTP4Q96DX8 246 aa10.55□□□□□ -0.72
CLK3-226ENST00000569406 MOCOSQ96EN8 888 aa10.55□□□□□ -0.72
CLK3-226ENST00000569406 ATP13A1Q9HD20 1204 aa10.55□□□□□ -0.72
CLK3-226ENST00000569406 KLHL21Q9UJP4 597 aa10.55□□□□□ -0.72
CLK3-226ENST00000569406 MGAT4AQ9UM21 535 aa10.55□□□□□ -0.72
CLK3-226ENST00000569406 TBC1D4O60343 1298 aa10.55□□□□□ -0.72
CLK3-226ENST00000569406 ERN1O75460 977 aaKnown RBP10.55□□□□□ -0.72
CLK3-226ENST00000569406 PDE9AO76083 593 aa10.55□□□□□ -0.72
CLK3-226ENST00000569406 FPR3P25089 353 aa10.55□□□□□ -0.72
CLK3-226ENST00000569406 ALDH9A1P49189 494 aa10.55□□□□□ -0.72
CLK3-226ENST00000569406 FGL1Q08830 312 aa10.55□□□□□ -0.72
CLK3-226ENST00000569406 TMEM132DQ14C87 1099 aa10.55□□□□□ -0.72
CLK3-226ENST00000569406 CYP51A1Q16850 503 aa10.55□□□□□ -0.72
CLK3-226ENST00000569406 SOWAHAQ2M3V2 549 aa10.55□□□□□ -0.72
CLK3-226ENST00000569406 CLLU1Q5K131 121 aa10.55□□□□□ -0.72
CLK3-226ENST00000569406 RBMS3Q6XE24 437 aaKnown RBP10.55□□□□□ -0.72
CLK3-226ENST00000569406 ZFP82Q8N141 532 aa10.55□□□□□ -0.72
CLK3-226ENST00000569406 STPG2Q8N412 459 aa10.55□□□□□ -0.72
CLK3-226ENST00000569406 SEPHS2Q99611 448 aa10.55□□□□□ -0.72
CLK3-226ENST00000569406 TBCDQ9BTW9 1192 aa10.55□□□□□ -0.72
CLK3-226ENST00000569406 TTLL2Q9BWV7 592 aa10.55□□□□□ -0.72
CLK3-226ENST00000569406 ZNF624Q9P2J8 865 aaPredicted RBP10.55□□□□□ -0.72
CLK3-226ENST00000569406 PCDHGB7Q9Y5F8 929 aa10.55□□□□□ -0.72
CLK3-226ENST00000569406 hCG_1807616A0A1W2PRN6 198 aa10.55□□□□□ -0.72
CLK3-226ENST00000569406 TCAF2A6NFQ2 919 aa10.55□□□□□ -0.72
CLK3-226ENST00000569406 INPP4BO15327 924 aa10.55□□□□□ -0.72
CLK3-226ENST00000569406 AIREO43918 545 aa10.55□□□□□ -0.72
CLK3-226ENST00000569406 RB1P06400 928 aa10.55□□□□□ -0.72
CLK3-226ENST00000569406 TPH1P17752 444 aa10.55□□□□□ -0.72
CLK3-226ENST00000569406 KCNJ3P48549 501 aa10.55□□□□□ -0.72
CLK3-226ENST00000569406 CRADDP78560 199 aa10.55□□□□□ -0.72
CLK3-226ENST00000569406 TATDN3Q17R31 274 aa10.55□□□□□ -0.72
CLK3-226ENST00000569406 CES5AQ6NT32 575 aa10.55□□□□□ -0.72
CLK3-226ENST00000569406 TBPL2Q6SJ96 375 aa10.55□□□□□ -0.72
CLK3-226ENST00000569406 ZNF534Q76KX8 674 aa10.55□□□□□ -0.72
CLK3-226ENST00000569406 LIX1LQ8IVB5 337 aa10.55□□□□□ -0.72
CLK3-226ENST00000569406 SNX33Q8WV41 574 aa10.55□□□□□ -0.72
CLK3-226ENST00000569406 RXFP2Q8WXD0 754 aa10.55□□□□□ -0.72
CLK3-226ENST00000569406 MYLPFQ96A32 169 aa10.55□□□□□ -0.72
CLK3-226ENST00000569406 FUBP1Q96AE4 644 aaKnown RBP10.55□□□□□ -0.72
CLK3-226ENST00000569406 SPSB2Q99619 263 aa10.55□□□□□ -0.72
CLK3-226ENST00000569406 RNF121Q9H920 327 aa10.55□□□□□ -0.72
CLK3-226ENST00000569406 KCNMB2Q9Y691 235 aa10.55□□□□□ -0.72
CLK3-226ENST00000569406 A0A0U1RQS6 177 aa10.54□□□□□ -0.72
CLK3-226ENST00000569406 A0A1W2PPL8 197 aa10.54□□□□□ -0.72
CLK3-226ENST00000569406 RPS10-NUDT3A0A1W2PQS6 291 aa10.54□□□□□ -0.72
CLK3-226ENST00000569406 GSTA4O15217 222 aa10.54□□□□□ -0.72
CLK3-226ENST00000569406 SIGLEC5O15389 551 aa10.54□□□□□ -0.72
CLK3-226ENST00000569406 NPHS1O60500 1241 aa10.54□□□□□ -0.72
CLK3-226ENST00000569406 LRIG2O94898 1065 aa10.54□□□□□ -0.72
CLK3-226ENST00000569406 AHSGP02765 367 aa10.54□□□□□ -0.72
CLK3-226ENST00000569406 HRGP04196 525 aa10.54□□□□□ -0.72
CLK3-226ENST00000569406 SYN1P17600 705 aa10.54□□□□□ -0.72
CLK3-226ENST00000569406 ADRA1BP35368 520 aa10.54□□□□□ -0.72
CLK3-226ENST00000569406 ASMTP46597 345 aa10.54□□□□□ -0.72
CLK3-226ENST00000569406 AFF1P51825 1210 aaKnown RBP10.54□□□□□ -0.72
CLK3-226ENST00000569406 SIGLEC14Q08ET2 396 aa10.54□□□□□ -0.72
CLK3-226ENST00000569406 TRIP4Q15650 581 aaPredicted RBP10.54□□□□□ -0.72
CLK3-226ENST00000569406 GNASQ5JWF2 1037 aa10.54□□□□□ -0.72
CLK3-226ENST00000569406 OTUD1Q5VV17 481 aaPredicted RBP10.54□□□□□ -0.72
CLK3-226ENST00000569406 NUDT18Q6ZVK8 323 aa10.54□□□□□ -0.72
CLK3-226ENST00000569406 PRSS48Q7RTY5 328 aa10.54□□□□□ -0.72
CLK3-226ENST00000569406 CHDHQ8NE62 594 aaPredicted RBP10.54□□□□□ -0.72
CLK3-226ENST00000569406 GPRC5AQ8NFJ5 357 aa10.54□□□□□ -0.72
CLK3-226ENST00000569406 PCDH19Q8TAB3 1148 aa10.54□□□□□ -0.72
CLK3-226ENST00000569406 UPF1Q92900 1129 aaKnown RBP eCLIP10.54□□□□□ -0.72
CLK3-226ENST00000569406 DUS3LQ96G46 650 aaKnown RBP10.54□□□□□ -0.72
CLK3-226ENST00000569406 SYT17Q9BSW7 474 aa10.54□□□□□ -0.72
CLK3-226ENST00000569406 PTDSS2Q9BVG9 487 aa10.54□□□□□ -0.72
CLK3-226ENST00000569406 SLC22A4Q9H015 551 aa10.54□□□□□ -0.72
CLK3-226ENST00000569406 OR51M1Q9H341 326 aa10.54□□□□□ -0.72
CLK3-226ENST00000569406 CDCP1Q9H5V8 836 aa10.54□□□□□ -0.72
Retrieved 100 of 20,778 RNA–protein pairs in 65.4 ms