RNA–Protein interactions for RNA: ENST00000568232.1

CLK3-222, Transcript of CDC like kinase 3, human

Gene CLK3, Length 958 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
CLK3-222	ENST00000568232	AP2B1	P63010	937 aa		11.12	□□□□□ -0.63
CLK3-222	ENST00000568232	PMPCA	Q10713	525 aa		11.12	□□□□□ -0.63
CLK3-222	ENST00000568232	TAZ	Q16635	292 aa		11.12	□□□□□ -0.63
CLK3-222	ENST00000568232	MAPKAPK3	Q16644	382 aa		11.12	□□□□□ -0.63
CLK3-222	ENST00000568232	BTBD16	Q32M84	506 aa		11.12	□□□□□ -0.63
CLK3-222	ENST00000568232	TMEM211	Q6ICI0	200 aa		11.12	□□□□□ -0.63
CLK3-222	ENST00000568232	H3F3C	Q6NXT2	135 aa		11.12	□□□□□ -0.63
CLK3-222	ENST00000568232	TAS2R42	Q7RTR8	314 aa		11.12	□□□□□ -0.63
CLK3-222	ENST00000568232	PID1	Q7Z2X4	250 aa		11.12	□□□□□ -0.63
CLK3-222	ENST00000568232	CRLF3	Q8IUI8	442 aa		11.12	□□□□□ -0.63
CLK3-222	ENST00000568232	CLYBL	Q8N0X4	340 aa		11.12	□□□□□ -0.63
CLK3-222	ENST00000568232	SHISA5	Q8N114	240 aa		11.12	□□□□□ -0.63
CLK3-222	ENST00000568232	ZNF567	Q8N184	647 aa		11.12	□□□□□ -0.63
CLK3-222	ENST00000568232	AMER3	Q8N944	861 aa		11.12	□□□□□ -0.63
CLK3-222	ENST00000568232	TMEM178A	Q8NBL3	297 aa		11.12	□□□□□ -0.63
CLK3-222	ENST00000568232	ACRBP	Q8NEB7	543 aa		11.12	□□□□□ -0.63
CLK3-222	ENST00000568232	ELMO1	Q92556	727 aa		11.12	□□□□□ -0.63
CLK3-222	ENST00000568232	FCRL5	Q96RD9	977 aa		11.12	□□□□□ -0.63
CLK3-222	ENST00000568232	APOL2	Q9BQE5	337 aa		11.12	□□□□□ -0.63
CLK3-222	ENST00000568232	FICD	Q9BVA6	458 aa		11.12	□□□□□ -0.63
CLK3-222	ENST00000568232	FSD1L	Q9BXM9	530 aa		11.12	□□□□□ -0.63
CLK3-222	ENST00000568232	MAK16	Q9BXY0	300 aa	Known RBP	11.12	□□□□□ -0.63
CLK3-222	ENST00000568232	LUC7L	Q9NQ29	371 aa	Known RBP	11.12	□□□□□ -0.63
CLK3-222	ENST00000568232	INTS7	Q9NVH2	962 aa	Known RBP	11.12	□□□□□ -0.63
CLK3-222	ENST00000568232	KLHL8	Q9P2G9	620 aa	Predicted RBP	11.12	□□□□□ -0.63
CLK3-222	ENST00000568232	GNPTG	Q9UJJ9	305 aa		11.12	□□□□□ -0.63
CLK3-222	ENST00000568232	MKL2	Q9ULH7	1088 aa		11.12	□□□□□ -0.63
CLK3-222	ENST00000568232	INTS1	Q8N201	2190 aa	Known RBP	11.11	□□□□□ -0.63
CLK3-222	ENST00000568232	SLC5A10	A0PJK1	596 aa		11.11	□□□□□ -0.63
CLK3-222	ENST00000568232	C5orf60	A6NFR6	353 aa		11.11	□□□□□ -0.63
CLK3-222	ENST00000568232	NEURL1	O76050	574 aa		11.11	□□□□□ -0.63
CLK3-222	ENST00000568232	CD9	P21926	228 aa		11.11	□□□□□ -0.63
CLK3-222	ENST00000568232	PSMB5	P28074	263 aa		11.11	□□□□□ -0.63
CLK3-222	ENST00000568232	RFC3	P40938	356 aa		11.11	□□□□□ -0.63
CLK3-222	ENST00000568232	ARHGAP25	P42331	645 aa		11.11	□□□□□ -0.63
CLK3-222	ENST00000568232	NR0B1	P51843	470 aa	Known RBP	11.11	□□□□□ -0.63
CLK3-222	ENST00000568232	NUP107	P57740	925 aa		11.11	□□□□□ -0.63
CLK3-222	ENST00000568232	OC90	Q02509	493 aa	Predicted RBP	11.11	□□□□□ -0.63
CLK3-222	ENST00000568232	MPP3	Q13368	585 aa		11.11	□□□□□ -0.63
CLK3-222	ENST00000568232	GRB7	Q14451	532 aa		11.11	□□□□□ -0.63
CLK3-222	ENST00000568232	MUM1	Q2TAK8	710 aa		11.11	□□□□□ -0.63
CLK3-222	ENST00000568232	ZNF468	Q5VIY5	522 aa	Predicted RBP	11.11	□□□□□ -0.63
CLK3-222	ENST00000568232	SLC25A25	Q6KCM7	469 aa		11.11	□□□□□ -0.63
CLK3-222	ENST00000568232	LANCL3	Q6ZV70	420 aa		11.11	□□□□□ -0.63
CLK3-222	ENST00000568232	CDC20B	Q86Y33	519 aa		11.11	□□□□□ -0.63
CLK3-222	ENST00000568232	RFX6	Q8HWS3	928 aa		11.11	□□□□□ -0.63
CLK3-222	ENST00000568232	TMTC1	Q8IUR5	882 aa		11.11	□□□□□ -0.63
CLK3-222	ENST00000568232	FAM98A	Q8NCA5	519 aa	Known RBP	11.11	□□□□□ -0.63
CLK3-222	ENST00000568232	MBD6	Q96DN6	1003 aa		11.11	□□□□□ -0.63
CLK3-222	ENST00000568232	CABS1	Q96KC9	395 aa		11.11	□□□□□ -0.63
CLK3-222	ENST00000568232	GORASP1	Q9BQQ3	440 aa		11.11	□□□□□ -0.63
CLK3-222	ENST00000568232	KCNK13	Q9HB14	408 aa		11.11	□□□□□ -0.63
CLK3-222	ENST00000568232	RASSF1	Q9NS23	344 aa		11.11	□□□□□ -0.63
CLK3-222	ENST00000568232	C14orf105	Q9NVL8	296 aa		11.11	□□□□□ -0.63
CLK3-222	ENST00000568232	ADAM21	Q9UKJ8	722 aa		11.11	□□□□□ -0.63
CLK3-222	ENST00000568232	TRBV5-4	A0A0C4DH59	114 aa		11.1	□□□□□ -0.63
CLK3-222	ENST00000568232	OR2W5	A6NFC9	320 aa		11.1	□□□□□ -0.63
CLK3-222	ENST00000568232	GABRR3	A8MPY1	467 aa		11.1	□□□□□ -0.63
CLK3-222	ENST00000568232	CDC40	O60508	579 aa	Known RBP eCLIP	11.1	□□□□□ -0.63
CLK3-222	ENST00000568232	S1PR4	O95977	384 aa		11.1	□□□□□ -0.63
CLK3-222	ENST00000568232	C8orf89	P0DMQ9	161 aa		11.1	□□□□□ -0.63
CLK3-222	ENST00000568232	HOXC12	P31275	282 aa		11.1	□□□□□ -0.63
CLK3-222	ENST00000568232	SLC26A3	P40879	764 aa		11.1	□□□□□ -0.63
CLK3-222	ENST00000568232	ZNF140	P52738	457 aa	Predicted RBP	11.1	□□□□□ -0.63
CLK3-222	ENST00000568232	YBX1	P67809	324 aa	Known RBP	11.1	□□□□□ -0.63
CLK3-222	ENST00000568232	MAT1A	Q00266	395 aa	Known RBP	11.1	□□□□□ -0.63
CLK3-222	ENST00000568232	GTF3C1	Q12789	2109 aa		11.1	□□□□□ -0.63
CLK3-222	ENST00000568232	MSLN	Q13421	630 aa	Predicted RBP	11.1	□□□□□ -0.63
CLK3-222	ENST00000568232	DBN1	Q16643	649 aa		11.1	□□□□□ -0.63
CLK3-222	ENST00000568232	MEP1A	Q16819	746 aa		11.1	□□□□□ -0.63
CLK3-222	ENST00000568232	DEFB113	Q30KQ7	82 aa		11.1	□□□□□ -0.63
CLK3-222	ENST00000568232	GPR33	Q49SQ1	333 aa		11.1	□□□□□ -0.63
CLK3-222	ENST00000568232	EMC4	Q5J8M3	183 aa		11.1	□□□□□ -0.63
CLK3-222	ENST00000568232	PLAG1	Q6DJT9	500 aa		11.1	□□□□□ -0.63
CLK3-222	ENST00000568232	CAMKMT	Q7Z624	323 aa		11.1	□□□□□ -0.63
CLK3-222	ENST00000568232	KRTAP1-3	Q8IUG1	177 aa		11.1	□□□□□ -0.63
CLK3-222	ENST00000568232	ZC3H7A	Q8IWR0	971 aa	Known RBP	11.1	□□□□□ -0.63
CLK3-222	ENST00000568232	PIANP	Q8IYJ0	282 aa		11.1	□□□□□ -0.63
CLK3-222	ENST00000568232	GOT1L1	Q8NHS2	421 aa	Predicted RBP	11.1	□□□□□ -0.63
CLK3-222	ENST00000568232	CFAP61	Q8NHU2	1237 aa		11.1	□□□□□ -0.63
CLK3-222	ENST00000568232	TFB1M	Q8WVM0	346 aa	Known RBP	11.1	□□□□□ -0.63
CLK3-222	ENST00000568232	ZUFSP	Q96AP4	578 aa		11.1	□□□□□ -0.63
CLK3-222	ENST00000568232	SLC22A18	Q96BI1	424 aa		11.1	□□□□□ -0.63
CLK3-222	ENST00000568232	MMAB	Q96EY8	250 aa	Predicted RBP	11.1	□□□□□ -0.63
CLK3-222	ENST00000568232	MIPEP	Q99797	713 aa		11.1	□□□□□ -0.63
CLK3-222	ENST00000568232	TGIF2	Q9GZN2	237 aa		11.1	□□□□□ -0.63
CLK3-222	ENST00000568232	NUP62CL	Q9H1M0	184 aa		11.1	□□□□□ -0.63
CLK3-222	ENST00000568232	HSD3B7	Q9H2F3	369 aa		11.1	□□□□□ -0.63
CLK3-222	ENST00000568232	SYNPO2L	Q9H987	977 aa		11.1	□□□□□ -0.63
CLK3-222	ENST00000568232	SLC24A3	Q9HC58	644 aa		11.1	□□□□□ -0.63
CLK3-222	ENST00000568232	MKKS	Q9NPJ1	570 aa	Predicted RBP	11.1	□□□□□ -0.63
CLK3-222	ENST00000568232	SMARCAL1	Q9NZC9	954 aa		11.1	□□□□□ -0.63
CLK3-222	ENST00000568232	IMPACT	Q9P2X3	320 aa		11.1	□□□□□ -0.63
CLK3-222	ENST00000568232	FAM169A	Q9Y6X4	670 aa		11.1	□□□□□ -0.63
CLK3-222	ENST00000568232	RTTN	Q86VV8	2226 aa		11.09	□□□□□ -0.63
CLK3-222	ENST00000568232		A0A087X0T9	212 aa		11.09	□□□□□ -0.63
CLK3-222	ENST00000568232	KRT87P	A6NCN2	255 aa		11.09	□□□□□ -0.63
CLK3-222	ENST00000568232	TARM1	B6A8C7	271 aa		11.09	□□□□□ -0.63
CLK3-222	ENST00000568232	KDM1A	O60341	852 aa		11.09	□□□□□ -0.63
CLK3-222	ENST00000568232	PDE9A	O76083	593 aa		11.09	□□□□□ -0.63

Retrieved 100 of 20,778 RNA–protein pairs in 124.2 ms