RNA–Protein interactions for RNA: ENST00000566926.1

CLK3-218, Transcript of CDC like kinase 3, humanhuman

TSL 5

Gene CLK3, Length 646 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-218ENST00000566926 GUCY1A3Q02108 690 aa12.94□□□□□ -0.34
CLK3-218ENST00000566926 GABPB1Q06547 395 aaPredicted RBP12.94□□□□□ -0.34
CLK3-218ENST00000566926 MPP2Q14168 576 aa12.94□□□□□ -0.34
CLK3-218ENST00000566926 ACAP2Q15057 778 aa12.94□□□□□ -0.34
CLK3-218ENST00000566926 GPR19Q15760 415 aa12.94□□□□□ -0.34
CLK3-218ENST00000566926 ACSBG2Q5FVE4 666 aa12.94□□□□□ -0.34
CLK3-218ENST00000566926 PWWP2BQ6NUJ5 590 aa12.94□□□□□ -0.34
CLK3-218ENST00000566926 ZNF549Q6P9A3 640 aa12.94□□□□□ -0.34
CLK3-218ENST00000566926 RGS9BPQ6ZS82 235 aa12.94□□□□□ -0.34
CLK3-218ENST00000566926 TIPARPQ7Z3E1 657 aaKnown RBP12.94□□□□□ -0.34
CLK3-218ENST00000566926 TMEM126BQ8IUX1 230 aa12.94□□□□□ -0.34
CLK3-218ENST00000566926 CEP97Q8IW35 865 aa12.94□□□□□ -0.34
CLK3-218ENST00000566926 C19orf47Q8N9M1 422 aaKnown RBP12.94□□□□□ -0.34
CLK3-218ENST00000566926 GALNT6Q8NCL4 622 aa12.94□□□□□ -0.34
CLK3-218ENST00000566926 FAM136AQ96C01 138 aa12.94□□□□□ -0.34
CLK3-218ENST00000566926 ZNF501Q96CX3 271 aaPredicted RBP12.94□□□□□ -0.34
CLK3-218ENST00000566926 SLC45A3Q96JT2 553 aa12.94□□□□□ -0.34
CLK3-218ENST00000566926 UBXN10Q96LJ8 280 aa12.94□□□□□ -0.34
CLK3-218ENST00000566926 MAGEB18Q96M61 343 aa12.94□□□□□ -0.34
CLK3-218ENST00000566926 PPM1MQ96MI6 270 aa12.94□□□□□ -0.34
CLK3-218ENST00000566926 FAM111AQ96PZ2 611 aa12.94□□□□□ -0.34
CLK3-218ENST00000566926 OLFM1Q99784 485 aa12.94□□□□□ -0.34
CLK3-218ENST00000566926 TWSG1Q9GZX9 223 aa12.94□□□□□ -0.34
CLK3-218ENST00000566926 SPATA7Q9P0W8 599 aa12.94□□□□□ -0.34
CLK3-218ENST00000566926 KCND3Q9UK17 655 aa12.94□□□□□ -0.34
CLK3-218ENST00000566926 PCDHGA4Q9Y5G9 962 aa12.94□□□□□ -0.34
CLK3-218ENST00000566926 MDC1Q14676 2089 aaKnown RBP12.93□□□□□ -0.34
CLK3-218ENST00000566926 MGAQ8IWI9 3026 aa12.93□□□□□ -0.34
CLK3-218ENST00000566926 LOC101059948A0A1B0GTJ6 334 aa12.93□□□□□ -0.34
CLK3-218ENST00000566926 TK2O00142 265 aa12.93□□□□□ -0.34
CLK3-218ENST00000566926 PLIN3O60664 434 aa12.93□□□□□ -0.34
CLK3-218ENST00000566926 H2AFYO75367 372 aaKnown RBP12.93□□□□□ -0.34
CLK3-218ENST00000566926 SCRG1O75711 98 aa12.93□□□□□ -0.34
CLK3-218ENST00000566926 KLK3P07288 261 aaPredicted RBP12.93□□□□□ -0.34
CLK3-218ENST00000566926 HBQ1P09105 142 aa12.93□□□□□ -0.34
CLK3-218ENST00000566926 ZNF28P17035 718 aa12.93□□□□□ -0.34
CLK3-218ENST00000566926 LSP1P33241 339 aa12.93□□□□□ -0.34
CLK3-218ENST00000566926 HSD17B2P37059 387 aa12.93□□□□□ -0.34
CLK3-218ENST00000566926 SERPINB4P48594 390 aa12.93□□□□□ -0.34
CLK3-218ENST00000566926 RGS4P49798 205 aa12.93□□□□□ -0.34
CLK3-218ENST00000566926 GYS2P54840 703 aa12.93□□□□□ -0.34
CLK3-218ENST00000566926 CDKN2DP55273 166 aa12.93□□□□□ -0.34
CLK3-218ENST00000566926 IL2P60568 153 aa12.93□□□□□ -0.34
CLK3-218ENST00000566926 GNGT1P63211 74 aa12.93□□□□□ -0.34
CLK3-218ENST00000566926 ASPHQ12797 758 aa12.93□□□□□ -0.34
CLK3-218ENST00000566926 GRB7Q14451 532 aa12.93□□□□□ -0.34
CLK3-218ENST00000566926 NAA25Q14CX7 972 aa12.93□□□□□ -0.34
CLK3-218ENST00000566926 PDK4Q16654 411 aa12.93□□□□□ -0.34
CLK3-218ENST00000566926 TAX1BP1Q86VP1 789 aa12.93□□□□□ -0.34
CLK3-218ENST00000566926 GPR135Q8IZ08 494 aa12.93□□□□□ -0.34
CLK3-218ENST00000566926 HMGCLL1Q8TB92 370 aa12.93□□□□□ -0.34
CLK3-218ENST00000566926 MGARPQ8TDB4 240 aa12.93□□□□□ -0.34
CLK3-218ENST00000566926 CKAP2Q8WWK9 683 aa12.93□□□□□ -0.34
CLK3-218ENST00000566926 CCDC126Q96EE4 140 aa12.93□□□□□ -0.34
CLK3-218ENST00000566926 PDLIM5Q96HC4 596 aaKnown RBP12.93□□□□□ -0.34
CLK3-218ENST00000566926 GPR21Q99679 349 aa12.93□□□□□ -0.34
CLK3-218ENST00000566926 MRPL57Q9BQC6 102 aaKnown RBP12.93□□□□□ -0.34
CLK3-218ENST00000566926 MENTQ9BUN1 341 aa12.93□□□□□ -0.34
CLK3-218ENST00000566926 FAM117AQ9C073 453 aa12.93□□□□□ -0.34
CLK3-218ENST00000566926 SLC7A5P2Q9GIP4 190 aa12.93□□□□□ -0.34
CLK3-218ENST00000566926 DERL2Q9GZP9 239 aa12.93□□□□□ -0.34
CLK3-218ENST00000566926 SPHK1Q9NYA1 384 aa12.93□□□□□ -0.34
CLK3-218ENST00000566926 PCDHB3Q9Y5E6 796 aa12.93□□□□□ -0.34
CLK3-218ENST00000566926 IGSF10Q6WRI0 2623 aa12.93□□□□□ -0.34
CLK3-218ENST00000566926 C21orf140B9A014 251 aa12.92□□□□□ -0.34
CLK3-218ENST00000566926 TMEM150CB9EJG8 249 aa12.92□□□□□ -0.34
CLK3-218ENST00000566926 KLF11O14901 512 aa12.92□□□□□ -0.34
CLK3-218ENST00000566926 ATXN7O15265 892 aaPredicted RBP12.92□□□□□ -0.34
CLK3-218ENST00000566926 ZBTB14O43829 449 aa12.92□□□□□ -0.34
CLK3-218ENST00000566926 PSIP1O75475 530 aaKnown RBP12.92□□□□□ -0.34
CLK3-218ENST00000566926 ITGB2P05107 769 aa12.92□□□□□ -0.34
CLK3-218ENST00000566926 CCDC166P0CW27 439 aa12.92□□□□□ -0.34
CLK3-218ENST00000566926 PVRP15151 417 aa12.92□□□□□ -0.34
CLK3-218ENST00000566926 CYP2A7P20853 494 aa12.92□□□□□ -0.34
CLK3-218ENST00000566926 DLSTP36957 453 aa12.92□□□□□ -0.34
CLK3-218ENST00000566926 BDKRB1P46663 353 aa12.92□□□□□ -0.34
CLK3-218ENST00000566926 ITGA1P56199 1179 aa12.92□□□□□ -0.34
CLK3-218ENST00000566926 WDR4P57081 412 aaKnown RBP12.92□□□□□ -0.34
CLK3-218ENST00000566926 SRSF6Q13247 344 aaKnown RBP12.92□□□□□ -0.34
CLK3-218ENST00000566926 ARHGAP19Q14CB8 494 aa12.92□□□□□ -0.34
CLK3-218ENST00000566926 SF1Q15637 639 aaKnown RBP12.92□□□□□ -0.34
CLK3-218ENST00000566926 CDHR3Q6ZTQ4 885 aa12.92□□□□□ -0.34
CLK3-218ENST00000566926 CENPLQ8N0S6 344 aaPredicted RBP12.92□□□□□ -0.34
CLK3-218ENST00000566926 CCDC63Q8NA47 563 aa12.92□□□□□ -0.34
CLK3-218ENST00000566926 LINC01555Q8NAE3 123 aa12.92□□□□□ -0.34
CLK3-218ENST00000566926 FBXO15Q8NCQ5 510 aaPredicted RBP12.92□□□□□ -0.34
CLK3-218ENST00000566926 OR9A1PQ8NGU1 263 aa12.92□□□□□ -0.34
CLK3-218ENST00000566926 RHEBL1Q8TAI7 183 aa12.92□□□□□ -0.34
CLK3-218ENST00000566926 LRRC8CQ8TDW0 803 aa12.92□□□□□ -0.34
CLK3-218ENST00000566926 LRFN5Q96NI6 719 aa12.92□□□□□ -0.34
CLK3-218ENST00000566926 CATSPER2Q96P56 530 aa12.92□□□□□ -0.34
CLK3-218ENST00000566926 NRTNQ99748 197 aa12.92□□□□□ -0.34
CLK3-218ENST00000566926 PAIP2Q9BPZ3 127 aaKnown RBP12.92□□□□□ -0.34
CLK3-218ENST00000566926 MRPL46Q9H2W6 279 aaKnown RBP12.92□□□□□ -0.34
CLK3-218ENST00000566926 LHX9Q9NQ69 397 aa12.92□□□□□ -0.34
CLK3-218ENST00000566926 CCDC88CQ9P219 2028 aa12.92□□□□□ -0.34
CLK3-218ENST00000566926 GALPQ9UBC7 116 aa12.92□□□□□ -0.34
CLK3-218ENST00000566926 TMCO1Q9UM00 188 aa12.92□□□□□ -0.34
CLK3-218ENST00000566926 RUVBL2Q9Y230 463 aaKnown RBP12.92□□□□□ -0.34
CLK3-218ENST00000566926 AP1M2Q9Y6Q5 423 aa12.92□□□□□ -0.34
Retrieved 100 of 20,778 RNA–protein pairs in 57.2 ms