RNA–Protein interactions for RNA: ENST00000565778.6

CLN3-219, Transcript of CLN3, battenin, humanhuman

TSL 1 (best)

Gene CLN3, Length 688 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-219ENST00000565778 COX15Q7KZN9 410 aa19.8■□□□□ 0.76
CLN3-219ENST00000565778 ADCK2Q7Z695 626 aa19.8■□□□□ 0.76
CLN3-219ENST00000565778 PAQR7Q86WK9 346 aa19.8■□□□□ 0.76
CLN3-219ENST00000565778 DTWD1Q8N5C7 304 aa19.8■□□□□ 0.76
CLN3-219ENST00000565778 NACC2Q96BF6 587 aa19.8■□□□□ 0.76
CLN3-219ENST00000565778 CERS2Q96G23 380 aa19.8■□□□□ 0.76
CLN3-219ENST00000565778 CFAP36Q96G28 342 aa19.8■□□□□ 0.76
CLN3-219ENST00000565778 PDLIM2Q96JY6 352 aa19.8■□□□□ 0.76
CLN3-219ENST00000565778 CABS1Q96KC9 395 aa19.8■□□□□ 0.76
CLN3-219ENST00000565778 MFRPQ9BY79 579 aa19.8■□□□□ 0.76
CLN3-219ENST00000565778 SLC26A1Q9H2B4 701 aa19.8■□□□□ 0.76
CLN3-219ENST00000565778 SOX17Q9H6I2 414 aaPredicted RBP19.8■□□□□ 0.76
CLN3-219ENST00000565778 PYCARDQ9ULZ3 195 aa19.8■□□□□ 0.76
CLN3-219ENST00000565778 MED13Q9UHV7 2174 aa19.79■□□□□ 0.76
CLN3-219ENST00000565778 IGKV1-8A0A0C4DH67 115 aa19.79■□□□□ 0.76
CLN3-219ENST00000565778 AGPSO00116 658 aa19.79■□□□□ 0.76
CLN3-219ENST00000565778 MASP2O00187 686 aa19.79■□□□□ 0.76
CLN3-219ENST00000565778 MED26O95402 600 aa19.79■□□□□ 0.76
CLN3-219ENST00000565778 MMP11P24347 488 aa19.79■□□□□ 0.76
CLN3-219ENST00000565778 GABRB3P28472 473 aa19.79■□□□□ 0.76
CLN3-219ENST00000565778 OCA2Q04671 838 aa19.79■□□□□ 0.76
CLN3-219ENST00000565778 TEDDM1Q5T9Z0 273 aa19.79■□□□□ 0.76
CLN3-219ENST00000565778 PRMT9Q6P2P2 845 aa19.79■□□□□ 0.76
CLN3-219ENST00000565778 PAQR3Q6TCH7 311 aa19.79■□□□□ 0.76
CLN3-219ENST00000565778 KIAA0408Q6ZU52 694 aa19.79■□□□□ 0.76
CLN3-219ENST00000565778 HPS6Q86YV9 775 aa19.79■□□□□ 0.76
CLN3-219ENST00000565778 GALNT16Q8N428 558 aa19.79■□□□□ 0.76
CLN3-219ENST00000565778 RERGQ96A58 199 aaPredicted RBP19.79■□□□□ 0.76
CLN3-219ENST00000565778 SMAD5Q99717 465 aaKnown RBP19.79■□□□□ 0.76
CLN3-219ENST00000565778 TRIM51Q9BSJ1 452 aa19.79■□□□□ 0.76
CLN3-219ENST00000565778 TRIM31Q9BZY9 425 aa19.79■□□□□ 0.76
CLN3-219ENST00000565778 NXT1Q9UKK6 140 aaKnown RBP19.79■□□□□ 0.76
CLN3-219ENST00000565778 CHMP2BQ9UQN3 213 aa19.79■□□□□ 0.76
CLN3-219ENST00000565778 TNRC6AQ8NDV7 1962 aaKnown RBP19.78■□□□□ 0.76
CLN3-219ENST00000565778 CCDC188H7C350 402 aa19.78■□□□□ 0.76
CLN3-219ENST00000565778 TTI1O43156 1089 aa19.78■□□□□ 0.76
CLN3-219ENST00000565778 KLHL41O60662 606 aa19.78■□□□□ 0.76
CLN3-219ENST00000565778 IMPA1P29218 277 aa19.78■□□□□ 0.76
CLN3-219ENST00000565778 ITGA8P53708 1063 aa19.78■□□□□ 0.76
CLN3-219ENST00000565778 CDKN2DP55273 166 aa19.78■□□□□ 0.76
CLN3-219ENST00000565778 TIAL1Q01085 375 aaKnown RBP eCLIP19.78■□□□□ 0.76
CLN3-219ENST00000565778 PRTGQ2VWP7 1150 aa19.78■□□□□ 0.76
CLN3-219ENST00000565778 RBM20Q5T481 1227 aaKnown RBP19.78■□□□□ 0.76
CLN3-219ENST00000565778 ZNF425Q6IV72 752 aa19.78■□□□□ 0.76
CLN3-219ENST00000565778 HIBCHQ6NVY1 386 aaPredicted RBP19.78■□□□□ 0.76
CLN3-219ENST00000565778 ATCAYQ86WG3 371 aa19.78■□□□□ 0.76
CLN3-219ENST00000565778 MYO1HQ8N1T3 1032 aa19.78■□□□□ 0.76
CLN3-219ENST00000565778 CSNK1A1LQ8N752 337 aa19.78■□□□□ 0.76
CLN3-219ENST00000565778 EFCAB3Q8N7B9 438 aa19.78■□□□□ 0.76
CLN3-219ENST00000565778 MIB2Q96AX9 1013 aa19.78■□□□□ 0.76
CLN3-219ENST00000565778 CCDC138Q96M89 665 aa19.78■□□□□ 0.76
CLN3-219ENST00000565778 SPSB2Q99619 263 aa19.78■□□□□ 0.76
CLN3-219ENST00000565778 YIPF2Q9BWQ6 316 aa19.78■□□□□ 0.76
CLN3-219ENST00000565778 PARVBQ9HBI1 364 aa19.78■□□□□ 0.76
CLN3-219ENST00000565778 C5AR2Q9P296 337 aa19.78■□□□□ 0.76
CLN3-219ENST00000565778 CTSFQ9UBX1 484 aa19.78■□□□□ 0.76
CLN3-219ENST00000565778 CDC14AQ9UNH5 594 aa19.78■□□□□ 0.76
CLN3-219ENST00000565778 CCDC88CQ9P219 2028 aa19.77■□□□□ 0.76
CLN3-219ENST00000565778 H7BY64 318 aa19.77■□□□□ 0.76
CLN3-219ENST00000565778 ALPPP05187 535 aa19.77■□□□□ 0.76
CLN3-219ENST00000565778 C8GP07360 202 aa19.77■□□□□ 0.76
CLN3-219ENST00000565778 EZRP15311 586 aaKnown RBP19.77■□□□□ 0.76
CLN3-219ENST00000565778 ARL4CP56559 192 aa19.77■□□□□ 0.76
CLN3-219ENST00000565778 MYBPC3Q14896 1274 aa19.77■□□□□ 0.76
CLN3-219ENST00000565778 HIF1AQ16665 826 aa19.77■□□□□ 0.76
CLN3-219ENST00000565778 VWA5B1Q5TIE3 1220 aa19.77■□□□□ 0.76
CLN3-219ENST00000565778 JMJD6Q6NYC1 403 aaPredicted RBP19.77■□□□□ 0.76
CLN3-219ENST00000565778 CNTN4Q8IWV2 1026 aa19.77■□□□□ 0.76
CLN3-219ENST00000565778 LRRC56Q8IYG6 542 aaPredicted RBP19.77■□□□□ 0.76
CLN3-219ENST00000565778 MIEF2Q96C03 454 aa19.77■□□□□ 0.76
CLN3-219ENST00000565778 LRRC39Q96DD0 335 aa19.77■□□□□ 0.76
CLN3-219ENST00000565778 SNF8Q96H20 258 aa19.77■□□□□ 0.76
CLN3-219ENST00000565778 PRAP1Q96NZ9 151 aa19.77■□□□□ 0.76
CLN3-219ENST00000565778 OR2A5Q96R48 311 aa19.77■□□□□ 0.76
CLN3-219ENST00000565778 SLAMF7Q9NQ25 335 aa19.77■□□□□ 0.76
CLN3-219ENST00000565778 SLC17A6Q9P2U8 582 aa19.77■□□□□ 0.76
CLN3-219ENST00000565778 RNF14Q9UBS8 474 aa19.77■□□□□ 0.76
CLN3-219ENST00000565778 ZNF282Q9UDV7 671 aaPredicted RBP19.77■□□□□ 0.76
CLN3-219ENST00000565778 ADAMTS6Q9UKP5 1117 aa19.77■□□□□ 0.76
CLN3-219ENST00000565778 PDE10AQ9Y233 779 aa19.77■□□□□ 0.76
CLN3-219ENST00000565778 RUVBL1Q9Y265 456 aaKnown RBP19.77■□□□□ 0.76
CLN3-219ENST00000565778 FER1L5A0AVI2 2057 aa19.76■□□□□ 0.75
CLN3-219ENST00000565778 VSTM2BA6NLU5 285 aa19.76■□□□□ 0.75
CLN3-219ENST00000565778 TXNDC9O14530 226 aa19.76■□□□□ 0.75
CLN3-219ENST00000565778 HIST1H2AGP0C0S8 130 aaPredicted RBP19.76■□□□□ 0.75
CLN3-219ENST00000565778 HIST1H2ADP20671 130 aa19.76■□□□□ 0.75
CLN3-219ENST00000565778 FBLP22087 321 aaKnown RBP19.76■□□□□ 0.75
CLN3-219ENST00000565778 EMP3P54852 163 aa19.76■□□□□ 0.75
CLN3-219ENST00000565778 IL2P60568 153 aa19.76■□□□□ 0.75
CLN3-219ENST00000565778 RELAQ04206 551 aa19.76■□□□□ 0.75
CLN3-219ENST00000565778 AIMP2Q13155 320 aaKnown RBP19.76■□□□□ 0.75
CLN3-219ENST00000565778 PDAP1Q13442 181 aaKnown RBP19.76■□□□□ 0.75
CLN3-219ENST00000565778 RBBP7Q16576 425 aa19.76■□□□□ 0.75
CLN3-219ENST00000565778 HKDC1Q2TB90 917 aa19.76■□□□□ 0.75
CLN3-219ENST00000565778 PLD3Q8IV08 490 aa19.76■□□□□ 0.75
CLN3-219ENST00000565778 ANKMY2Q8IV38 441 aa19.76■□□□□ 0.75
CLN3-219ENST00000565778 PRSS58Q8IYP2 241 aa19.76■□□□□ 0.75
CLN3-219ENST00000565778 RBMXL3Q8N7X1 1067 aaKnown RBP19.76■□□□□ 0.75
CLN3-219ENST00000565778 GPATCH11Q8N954 259 aa19.76■□□□□ 0.75
CLN3-219ENST00000565778 CPT1CQ8TCG5 803 aa19.76■□□□□ 0.75
Retrieved 100 of 20,778 RNA–protein pairs in 108 ms