RNA–Protein interactions for RNA: ENST00000560260.5

SNX1-210, Transcript of sorting nexin 1, humanhuman

TSL 1 (best)

Gene SNX1, Length 1,326 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SNX1-210ENST00000560260 PRAMEF4O60810 478 aa20.91■□□□□ 0.94
SNX1-210ENST00000560260 SPAG7O75391 227 aa20.91■□□□□ 0.94
SNX1-210ENST00000560260 IPO13O94829 963 aaKnown RBP20.91■□□□□ 0.94
SNX1-210ENST00000560260 SIX3O95343 332 aaPredicted RBP20.91■□□□□ 0.94
SNX1-210ENST00000560260 JMJD7P0C870 316 aa20.91■□□□□ 0.94
SNX1-210ENST00000560260 CDH1P12830 882 aa20.91■□□□□ 0.94
SNX1-210ENST00000560260 ARL4DP49703 201 aa20.91■□□□□ 0.94
SNX1-210ENST00000560260 ALDH18A1P54886 795 aaKnown RBP20.91■□□□□ 0.94
SNX1-210ENST00000560260 PRAMEF9Q5VWM5 478 aa20.91■□□□□ 0.94
SNX1-210ENST00000560260 EXOC3L1Q86VI1 746 aa20.91■□□□□ 0.94
SNX1-210ENST00000560260 C17orf64Q86WR6 236 aa20.91■□□□□ 0.94
SNX1-210ENST00000560260 NEIL2Q969S2 332 aa20.91■□□□□ 0.94
SNX1-210ENST00000560260 RNF31Q96EP0 1072 aa20.91■□□□□ 0.94
SNX1-210ENST00000560260 PGM2Q96G03 612 aa20.91■□□□□ 0.94
SNX1-210ENST00000560260 TCTN2Q96GX1 697 aa20.91■□□□□ 0.94
SNX1-210ENST00000560260 OR6C1Q96RD1 312 aa20.91■□□□□ 0.94
SNX1-210ENST00000560260 HAUS8Q9BT25 410 aa20.91■□□□□ 0.94
SNX1-210ENST00000560260 CD244Q9BZW8 370 aa20.91■□□□□ 0.94
SNX1-210ENST00000560260 CENPHQ9H3R5 247 aa20.91■□□□□ 0.94
SNX1-210ENST00000560260 ASCL3Q9NQ33 180 aa20.91■□□□□ 0.94
SNX1-210ENST00000560260 CEP295Q9C0D2 2601 aa20.91■□□□□ 0.94
SNX1-210ENST00000560260 C9orf172C9J069 976 aa20.9■□□□□ 0.94
SNX1-210ENST00000560260 H7BY64 318 aa20.9■□□□□ 0.94
SNX1-210ENST00000560260 HAT1O14929 419 aa20.9■□□□□ 0.94
SNX1-210ENST00000560260 CCNT2O60583 730 aaKnown RBP20.9■□□□□ 0.94
SNX1-210ENST00000560260 STK16O75716 305 aa20.9■□□□□ 0.94
SNX1-210ENST00000560260 TNFSF15O95150 251 aa20.9■□□□□ 0.94
SNX1-210ENST00000560260 CSNK1G2P78368 415 aa20.9■□□□□ 0.94
SNX1-210ENST00000560260 FOXM1Q08050 763 aa20.9■□□□□ 0.94
SNX1-210ENST00000560260 TUBB3Q13509 450 aa20.9■□□□□ 0.94
SNX1-210ENST00000560260 CATSPEREQ5SY80 951 aa20.9■□□□□ 0.94
SNX1-210ENST00000560260 RNF44Q7L0R7 432 aa20.9■□□□□ 0.94
SNX1-210ENST00000560260 LRRC70Q7Z2Q7 622 aa20.9■□□□□ 0.94
SNX1-210ENST00000560260 PLD3Q8IV08 490 aa20.9■□□□□ 0.94
SNX1-210ENST00000560260 SLC5A11Q8WWX8 675 aa20.9■□□□□ 0.94
SNX1-210ENST00000560260 GATA6Q92908 595 aa20.9■□□□□ 0.94
SNX1-210ENST00000560260 ZNF501Q96CX3 271 aaPredicted RBP20.9■□□□□ 0.94
SNX1-210ENST00000560260 PHF21BQ96EK2 531 aa20.9■□□□□ 0.94
SNX1-210ENST00000560260 PRAP1Q96NZ9 151 aa20.9■□□□□ 0.94
SNX1-210ENST00000560260 SPNS1Q9H2V7 528 aa20.9■□□□□ 0.94
SNX1-210ENST00000560260 TMBIM4Q9HC24 238 aa20.9■□□□□ 0.94
SNX1-210ENST00000560260 FGF21Q9NSA1 209 aa20.9■□□□□ 0.94
SNX1-210ENST00000560260 DNAJC11Q9NVH1 559 aa20.9■□□□□ 0.94
SNX1-210ENST00000560260 SLC39A1Q9NY26 324 aa20.9■□□□□ 0.94
SNX1-210ENST00000560260 ANKMY1Q9P2S6 941 aa20.9■□□□□ 0.94
SNX1-210ENST00000560260 PILRAQ9UKJ1 303 aa20.9■□□□□ 0.94
SNX1-210ENST00000560260 FRYQ5TBA9 3013 aa20.9■□□□□ 0.94
SNX1-210ENST00000560260 FREM2Q5SZK8 3169 aa20.9■□□□□ 0.94
SNX1-210ENST00000560260 E7EQ34 232 aa20.89■□□□□ 0.93
SNX1-210ENST00000560260 BRINP1O60477 761 aa20.89■□□□□ 0.93
SNX1-210ENST00000560260 DLX3O60479 287 aa20.89■□□□□ 0.93
SNX1-210ENST00000560260 SMIM24O75264 130 aa20.89■□□□□ 0.93
SNX1-210ENST00000560260 SASH3O75995 380 aa20.89■□□□□ 0.93
SNX1-210ENST00000560260 CDC16Q13042 620 aa20.89■□□□□ 0.93
SNX1-210ENST00000560260 PCBP2Q15366 365 aaKnown RBP eCLIP20.89■□□□□ 0.93
SNX1-210ENST00000560260 CROCCP2Q86T23 111 aa20.89■□□□□ 0.93
SNX1-210ENST00000560260 OR1L3Q8NH93 324 aa20.89■□□□□ 0.93
SNX1-210ENST00000560260 USP7Q93009 1102 aa20.89■□□□□ 0.93
SNX1-210ENST00000560260 ZUFSPQ96AP4 578 aa20.89■□□□□ 0.93
SNX1-210ENST00000560260 CNOT10Q9H9A5 744 aaKnown RBP20.89■□□□□ 0.93
SNX1-210ENST00000560260 FBXO8Q9NRD0 319 aa20.89■□□□□ 0.93
SNX1-210ENST00000560260 FOXJ2Q9P0K8 574 aa20.89■□□□□ 0.93
SNX1-210ENST00000560260 SLC17A7Q9P2U7 560 aa20.89■□□□□ 0.93
SNX1-210ENST00000560260 DYRK1BQ9Y463 629 aa20.89■□□□□ 0.93
SNX1-210ENST00000560260 B3GALT1Q9Y5Z6 326 aa20.89■□□□□ 0.93
SNX1-210ENST00000560260 G3V2L1 256 aa20.88■□□□□ 0.93
SNX1-210ENST00000560260 H3BMH7 237 aa20.88■□□□□ 0.93
SNX1-210ENST00000560260 STX16-NPEPL1H3BU86 382 aa20.88■□□□□ 0.93
SNX1-210ENST00000560260 K7EPI3 171 aa20.88■□□□□ 0.93
SNX1-210ENST00000560260 STX16O14662 325 aa20.88■□□□□ 0.93
SNX1-210ENST00000560260 TYROBPO43914 113 aa20.88■□□□□ 0.93
SNX1-210ENST00000560260 TIAF1O95411 115 aa20.88■□□□□ 0.93
SNX1-210ENST00000560260 MSL3P1P0C860 447 aa20.88■□□□□ 0.93
SNX1-210ENST00000560260 MYZAPP0CAP1 466 aa20.88■□□□□ 0.93
SNX1-210ENST00000560260 EEF1DP29692 281 aaKnown RBP20.88■□□□□ 0.93
SNX1-210ENST00000560260 CCT5P48643 541 aa20.88■□□□□ 0.93
SNX1-210ENST00000560260 NFKB2Q00653 900 aa20.88■□□□□ 0.93
SNX1-210ENST00000560260 ACY1Q03154 408 aa20.88■□□□□ 0.93
SNX1-210ENST00000560260 TMTC4Q5T4D3 741 aa20.88■□□□□ 0.93
SNX1-210ENST00000560260 FRMPD2BQ6IN97 320 aa20.88■□□□□ 0.93
SNX1-210ENST00000560260 FBXO42Q6P3S6 717 aa20.88■□□□□ 0.93
SNX1-210ENST00000560260 IGF2-ASQ6U949 168 aa20.88■□□□□ 0.93
SNX1-210ENST00000560260 HDXQ7Z353 690 aa20.88■□□□□ 0.93
SNX1-210ENST00000560260 ADCK2Q7Z695 626 aa20.88■□□□□ 0.93
SNX1-210ENST00000560260 TMPRSS11BQ86T26 416 aa20.88■□□□□ 0.93
SNX1-210ENST00000560260 ABHD11Q8NFV4 315 aa20.88■□□□□ 0.93
SNX1-210ENST00000560260 NXPE2Q96DL1 559 aa20.88■□□□□ 0.93
SNX1-210ENST00000560260 SLC46A1Q96NT5 459 aa20.88■□□□□ 0.93
SNX1-210ENST00000560260 SMC6Q96SB8 1091 aa20.88■□□□□ 0.93
SNX1-210ENST00000560260 ACSS2Q9NR19 701 aa20.88■□□□□ 0.93
SNX1-210ENST00000560260 ZNF446Q9NWS9 450 aa20.88■□□□□ 0.93
SNX1-210ENST00000560260 SENP1Q9P0U3 644 aa20.88■□□□□ 0.93
SNX1-210ENST00000560260 GRID1Q9ULK0 1009 aa20.88■□□□□ 0.93
SNX1-210ENST00000560260 TMCO1Q9UM00 188 aa20.88■□□□□ 0.93
SNX1-210ENST00000560260 SNX7Q9UNH6 387 aa20.88■□□□□ 0.93
SNX1-210ENST00000560260 PLLPQ9Y342 182 aa20.88■□□□□ 0.93
SNX1-210ENST00000560260 A0A0J9YVX5 310 aa20.87■□□□□ 0.93
SNX1-210ENST00000560260 CDRT15L2A8MXV6 281 aa20.87■□□□□ 0.93
SNX1-210ENST00000560260 TMEM150CB9EJG8 249 aa20.87■□□□□ 0.93
SNX1-210ENST00000560260 DXOO77932 396 aaKnown RBP20.87■□□□□ 0.93
Retrieved 100 of 20,778 RNA–protein pairs in 26.2 ms