RNA–Protein interactions for RNA: ENST00000557433.5

SHMT2-231, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 1 (best)

Gene SHMT2, Length 1,904 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-231ENST00000557433 H7C4K7 107 aa15.8■□□□□ 0.12
SHMT2-231ENST00000557433 GAPDHSO14556 408 aaPredicted RBP15.8■□□□□ 0.12
SHMT2-231ENST00000557433 LCKP06239 509 aa15.8■□□□□ 0.12
SHMT2-231ENST00000557433 CDKN2CP42773 168 aa15.8■□□□□ 0.12
SHMT2-231ENST00000557433 HNMTP50135 292 aa15.8■□□□□ 0.12
SHMT2-231ENST00000557433 RHOAP61586 193 aa15.8■□□□□ 0.12
SHMT2-231ENST00000557433 FAM189BP81408 668 aa15.8■□□□□ 0.12
SHMT2-231ENST00000557433 MAPK11Q15759 364 aa15.8■□□□□ 0.12
SHMT2-231ENST00000557433 CLLU1OSQ5K130 101 aa15.8■□□□□ 0.12
SHMT2-231ENST00000557433 ATAD3BQ5T9A4 648 aa15.8■□□□□ 0.12
SHMT2-231ENST00000557433 FAM171A1Q5VUB5 890 aa15.8■□□□□ 0.12
SHMT2-231ENST00000557433 C9orf131Q5VYM1 1079 aa15.8■□□□□ 0.12
SHMT2-231ENST00000557433 FAM151BQ6UXP7 276 aa15.8■□□□□ 0.12
SHMT2-231ENST00000557433 GPR155Q7Z3F1 870 aa15.8■□□□□ 0.12
SHMT2-231ENST00000557433 ENTHD1Q8IYW4 607 aa15.8■□□□□ 0.12
SHMT2-231ENST00000557433 POC5Q8NA72 575 aa15.8■□□□□ 0.12
SHMT2-231ENST00000557433 LKAAEAR1Q8TD35 194 aa15.8■□□□□ 0.12
SHMT2-231ENST00000557433 METTL2AQ96IZ6 378 aaKnown RBP15.8■□□□□ 0.12
SHMT2-231ENST00000557433 HSH2DQ96JZ2 352 aa15.8■□□□□ 0.12
SHMT2-231ENST00000557433 ZFYVE1Q9HBF4 777 aa15.8■□□□□ 0.12
SHMT2-231ENST00000557433 ABCB10Q9NRK6 738 aa15.8■□□□□ 0.12
SHMT2-231ENST00000557433 NPAP1Q9NZP6 1156 aa15.8■□□□□ 0.12
SHMT2-231ENST00000557433 LOC107983988A0A1B0GUW6 1196 aaPredicted RBP15.8■□□□□ 0.12
SHMT2-231ENST00000557433 PLK4O00444 970 aa15.8■□□□□ 0.12
SHMT2-231ENST00000557433 FPGTO14772 594 aa15.8■□□□□ 0.12
SHMT2-231ENST00000557433 DYRK3O43781 588 aa15.8■□□□□ 0.12
SHMT2-231ENST00000557433 PCDHGA12O60330 932 aa15.8■□□□□ 0.12
SHMT2-231ENST00000557433 MED26O95402 600 aa15.8■□□□□ 0.12
SHMT2-231ENST00000557433 CD160O95971 181 aa15.8■□□□□ 0.12
SHMT2-231ENST00000557433 COL6A1P12109 1028 aa15.8■□□□□ 0.12
SHMT2-231ENST00000557433 ENGP17813 658 aa15.8■□□□□ 0.12
SHMT2-231ENST00000557433 ETV6P41212 452 aa15.8■□□□□ 0.12
SHMT2-231ENST00000557433 MAPK8P45983 427 aa15.8■□□□□ 0.12
SHMT2-231ENST00000557433 VLDLRP98155 873 aa15.8■□□□□ 0.12
SHMT2-231ENST00000557433 ARHGEF7Q14155 803 aa15.8■□□□□ 0.12
SHMT2-231ENST00000557433 EIF4HQ15056 248 aaKnown RBP15.8■□□□□ 0.12
SHMT2-231ENST00000557433 CPSF6Q16630 551 aaKnown RBP eCLIP15.8■□□□□ 0.12
SHMT2-231ENST00000557433 SMN1Q16637 294 aaKnown RBP15.8■□□□□ 0.12
SHMT2-231ENST00000557433 ADGRF1Q5T601 910 aa15.8■□□□□ 0.12
SHMT2-231ENST00000557433 CXorf57Q6NSI4 855 aaKnown RBP15.8■□□□□ 0.12
SHMT2-231ENST00000557433 SLC46A3Q7Z3Q1 461 aa15.8■□□□□ 0.12
SHMT2-231ENST00000557433 ANKRD46Q86W74 232 aa15.8■□□□□ 0.12
SHMT2-231ENST00000557433 DENND1CQ8IV53 801 aa15.8■□□□□ 0.12
SHMT2-231ENST00000557433 CHTF18Q8WVB6 975 aa15.8■□□□□ 0.12
SHMT2-231ENST00000557433 APH1BQ8WW43 257 aa15.8■□□□□ 0.12
SHMT2-231ENST00000557433 PIH1D2Q8WWB5 315 aa15.8■□□□□ 0.12
SHMT2-231ENST00000557433 RPL3LQ92901 407 aaKnown RBP15.8■□□□□ 0.12
SHMT2-231ENST00000557433 EID2BQ96D98 161 aa15.8■□□□□ 0.12
SHMT2-231ENST00000557433 CRELD1Q96HD1 420 aa15.8■□□□□ 0.12
SHMT2-231ENST00000557433 TSSK3Q96PN8 268 aa15.8■□□□□ 0.12
SHMT2-231ENST00000557433 CRLS1Q9UJA2 301 aa15.8■□□□□ 0.12
SHMT2-231ENST00000557433 TSR3Q9UJK0 312 aaKnown RBP15.8■□□□□ 0.12
SHMT2-231ENST00000557433 A8MVJ9 347 aa15.79■□□□□ 0.12
SHMT2-231ENST00000557433 MAGEB17A8MXT2 336 aa15.79■□□□□ 0.12
SHMT2-231ENST00000557433 hCG_2039718K7EN88 272 aa15.79■□□□□ 0.12
SHMT2-231ENST00000557433 HAT1O14929 419 aa15.79■□□□□ 0.12
SHMT2-231ENST00000557433 CDK1P06493 297 aa15.79■□□□□ 0.12
SHMT2-231ENST00000557433 C8GP07360 202 aa15.79■□□□□ 0.12
SHMT2-231ENST00000557433 GGT2P36268 569 aa15.79■□□□□ 0.12
SHMT2-231ENST00000557433 GJA8P48165 433 aa15.79■□□□□ 0.12
SHMT2-231ENST00000557433 CREMQ03060 361 aa15.79■□□□□ 0.12
SHMT2-231ENST00000557433 TIGD6Q17RP2 521 aa15.79■□□□□ 0.12
SHMT2-231ENST00000557433 TPRG1LQ5T0D9 272 aa15.79■□□□□ 0.12
SHMT2-231ENST00000557433 HECTD3Q5T447 861 aa15.79■□□□□ 0.12
SHMT2-231ENST00000557433 ZNF551Q7Z340 670 aaPredicted RBP15.79■□□□□ 0.12
SHMT2-231ENST00000557433 ZSWIM9Q86XI8 627 aa15.79■□□□□ 0.12
SHMT2-231ENST00000557433 CCDC71Q8IV32 467 aaPredicted RBP15.79■□□□□ 0.12
SHMT2-231ENST00000557433 DEPDC4Q8N2C3 294 aa15.79■□□□□ 0.12
SHMT2-231ENST00000557433 OR8J2Q8NGG1 315 aa15.79■□□□□ 0.12
SHMT2-231ENST00000557433 C9orf43Q8TAL5 461 aaPredicted RBP15.79■□□□□ 0.12
SHMT2-231ENST00000557433 PANX1Q96RD7 426 aa15.79■□□□□ 0.12
SHMT2-231ENST00000557433 PCDH12Q9NPG4 1184 aa15.79■□□□□ 0.12
SHMT2-231ENST00000557433 ADPRHL2Q9NX46 363 aa15.79■□□□□ 0.12
SHMT2-231ENST00000557433 GPRC5BQ9NZH0 403 aa15.79■□□□□ 0.12
SHMT2-231ENST00000557433 PADI2Q9Y2J8 665 aa15.79■□□□□ 0.12
SHMT2-231ENST00000557433 PCDHGA6Q9Y5G7 932 aa15.79■□□□□ 0.12
SHMT2-231ENST00000557433 CLCA1A8K7I4 914 aa15.78■□□□□ 0.12
SHMT2-231ENST00000557433 LOC110117498-PIK3R3F6TDL0 507 aa15.78■□□□□ 0.12
SHMT2-231ENST00000557433 AMD1P17707 334 aa15.78■□□□□ 0.12
SHMT2-231ENST00000557433 ITGB6P18564 788 aa15.78■□□□□ 0.12
SHMT2-231ENST00000557433 LIPAP38571 399 aa15.78■□□□□ 0.12
SHMT2-231ENST00000557433 RPIAP49247 311 aa15.78■□□□□ 0.12
SHMT2-231ENST00000557433 ARPP19P56211 112 aa15.78■□□□□ 0.12
SHMT2-231ENST00000557433 KHDRBS1Q07666 443 aaKnown RBP eCLIP15.78■□□□□ 0.12
SHMT2-231ENST00000557433 LRRC74AQ0VAA2 488 aa15.78■□□□□ 0.12
SHMT2-231ENST00000557433 ELAVL2Q12926 359 aaKnown RBP15.78■□□□□ 0.12
SHMT2-231ENST00000557433 CSTF3Q12996 717 aaKnown RBP15.78■□□□□ 0.12
SHMT2-231ENST00000557433 STEAP3Q658P3 488 aa15.78■□□□□ 0.12
SHMT2-231ENST00000557433 PTOV1Q86YD1 416 aa15.78■□□□□ 0.12
SHMT2-231ENST00000557433 DNAJC22Q8N4W6 341 aa15.78■□□□□ 0.12
SHMT2-231ENST00000557433 PAF1Q8N7H5 531 aa15.78■□□□□ 0.12
SHMT2-231ENST00000557433 FBXO22Q8NEZ5 403 aa15.78■□□□□ 0.12
SHMT2-231ENST00000557433 PIK3R3Q92569 461 aa15.78■□□□□ 0.12
SHMT2-231ENST00000557433 DNASE1L2Q92874 299 aa15.78■□□□□ 0.12
SHMT2-231ENST00000557433 PYCR2Q96C36 320 aa15.78■□□□□ 0.12
SHMT2-231ENST00000557433 COL21A1Q96P44 957 aa15.78■□□□□ 0.12
SHMT2-231ENST00000557433 BOCQ9BWV1 1114 aa15.78■□□□□ 0.12
SHMT2-231ENST00000557433 RASSF1Q9NS23 344 aa15.78■□□□□ 0.12
SHMT2-231ENST00000557433 ARL15Q9NXU5 204 aa15.78■□□□□ 0.12
SHMT2-231ENST00000557433 SPASTQ9UBP0 616 aa15.78■□□□□ 0.12
Retrieved 100 of 20,778 RNA–protein pairs in 38.9 ms