RNA–Protein interactions for RNA: ENST00000557348.5

SHMT2-229, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 2

Gene SHMT2, Length 1,659 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-229ENST00000557348 HOXB2P14652 356 aa12.26□□□□□ -0.45
SHMT2-229ENST00000557348 EPORP19235 508 aa12.26□□□□□ -0.45
SHMT2-229ENST00000557348 KELP23276 732 aa12.26□□□□□ -0.45
SHMT2-229ENST00000557348 LTBRP36941 435 aa12.26□□□□□ -0.45
SHMT2-229ENST00000557348 TAS2R38P59533 333 aa12.26□□□□□ -0.45
SHMT2-229ENST00000557348 RHDQ02161 417 aa12.26□□□□□ -0.45
SHMT2-229ENST00000557348 DMPKQ09013 629 aa12.26□□□□□ -0.45
SHMT2-229ENST00000557348 NAE1Q13564 534 aa12.26□□□□□ -0.45
SHMT2-229ENST00000557348 LAPTM5Q13571 262 aa12.26□□□□□ -0.45
SHMT2-229ENST00000557348 NFYCQ13952 458 aa12.26□□□□□ -0.45
SHMT2-229ENST00000557348 E2F2Q14209 437 aa12.26□□□□□ -0.45
SHMT2-229ENST00000557348 CPSF6Q16630 551 aaKnown RBP eCLIP12.26□□□□□ -0.45
SHMT2-229ENST00000557348 MOGQ16653 247 aa12.26□□□□□ -0.45
SHMT2-229ENST00000557348 DPY19L1Q2PZI1 675 aa12.26□□□□□ -0.45
SHMT2-229ENST00000557348 TMEM196Q5HYL7 178 aa12.26□□□□□ -0.45
SHMT2-229ENST00000557348 PAGE2BQ5JRK9 111 aa12.26□□□□□ -0.45
SHMT2-229ENST00000557348 DUS1LQ6P1R4 473 aaKnown RBP12.26□□□□□ -0.45
SHMT2-229ENST00000557348 SCIMPQ6UWF3 145 aa12.26□□□□□ -0.45
SHMT2-229ENST00000557348 DCUN1D3Q8IWE4 304 aa12.26□□□□□ -0.45
SHMT2-229ENST00000557348 RGL4Q8IZJ4 473 aa12.26□□□□□ -0.45
SHMT2-229ENST00000557348 RAB42Q8N4Z0 105 aa12.26□□□□□ -0.45
SHMT2-229ENST00000557348 ST13P5Q8NFI4 369 aaPredicted RBP12.26□□□□□ -0.45
SHMT2-229ENST00000557348 OR9A1PQ8NGU1 263 aa12.26□□□□□ -0.45
SHMT2-229ENST00000557348 PROKR1Q8TCW9 393 aa12.26□□□□□ -0.45
SHMT2-229ENST00000557348 GANCQ8TET4 914 aa12.26□□□□□ -0.45
SHMT2-229ENST00000557348 SETD7Q8WTS6 366 aaKnown RBP12.26□□□□□ -0.45
SHMT2-229ENST00000557348 SLC35B4Q969S0 331 aa12.26□□□□□ -0.45
SHMT2-229ENST00000557348 UBE2E3Q969T4 207 aa12.26□□□□□ -0.45
SHMT2-229ENST00000557348 EFHD2Q96C19 240 aaPredicted RBP12.26□□□□□ -0.45
SHMT2-229ENST00000557348 LRRC58Q96CX6 371 aa12.26□□□□□ -0.45
SHMT2-229ENST00000557348 RPP25Q9BUL9 199 aaKnown RBP12.26□□□□□ -0.45
SHMT2-229ENST00000557348 EFCAB11Q9BUY7 163 aa12.26□□□□□ -0.45
SHMT2-229ENST00000557348 C1orf50Q9BV19 199 aa12.26□□□□□ -0.45
SHMT2-229ENST00000557348 FBXL12Q9NXK8 326 aa12.26□□□□□ -0.45
SHMT2-229ENST00000557348 FAM8A1Q9UBU6 413 aa12.26□□□□□ -0.45
SHMT2-229ENST00000557348 GIMAP2Q9UG22 337 aa12.26□□□□□ -0.45
SHMT2-229ENST00000557348 POLR3HQ9Y535 204 aaPredicted RBP12.26□□□□□ -0.45
SHMT2-229ENST00000557348 A0A1W2PP55 124 aa12.25□□□□□ -0.45
SHMT2-229ENST00000557348 E7ENX8 843 aa12.25□□□□□ -0.45
SHMT2-229ENST00000557348 H3BSA7 217 aa12.25□□□□□ -0.45
SHMT2-229ENST00000557348 ACOT8O14734 319 aa12.25□□□□□ -0.45
SHMT2-229ENST00000557348 PI15O43692 258 aa12.25□□□□□ -0.45
SHMT2-229ENST00000557348 SLC16A8O95907 504 aa12.25□□□□□ -0.45
SHMT2-229ENST00000557348 PCCBP05166 539 aa12.25□□□□□ -0.45
SHMT2-229ENST00000557348 ATP6V1B1P15313 513 aa12.25□□□□□ -0.45
SHMT2-229ENST00000557348 VARSP26640 1264 aaKnown RBP12.25□□□□□ -0.45
SHMT2-229ENST00000557348 IMPA1P29218 277 aa12.25□□□□□ -0.45
SHMT2-229ENST00000557348 SLC7A1P30825 629 aa12.25□□□□□ -0.45
SHMT2-229ENST00000557348 WASP42768 502 aa12.25□□□□□ -0.45
SHMT2-229ENST00000557348 SOX9P48436 509 aa12.25□□□□□ -0.45
SHMT2-229ENST00000557348 UFM1P61960 85 aa12.25□□□□□ -0.45
SHMT2-229ENST00000557348 KCNC4Q03721 635 aa12.25□□□□□ -0.45
SHMT2-229ENST00000557348 RELAQ04206 551 aa12.25□□□□□ -0.45
SHMT2-229ENST00000557348 WSCD2Q2TBF2 565 aa12.25□□□□□ -0.45
SHMT2-229ENST00000557348 XKR6Q5GH73 641 aa12.25□□□□□ -0.45
SHMT2-229ENST00000557348 EOGTQ5NDL2 527 aa12.25□□□□□ -0.45
SHMT2-229ENST00000557348 INTS11Q5TA45 600 aaKnown RBP12.25□□□□□ -0.45
SHMT2-229ENST00000557348 MSANTD1Q6ZTZ1 278 aa12.25□□□□□ -0.45
SHMT2-229ENST00000557348 GPR180Q86V85 440 aa12.25□□□□□ -0.45
SHMT2-229ENST00000557348 ANKFN1Q8N957 763 aa12.25□□□□□ -0.45
SHMT2-229ENST00000557348 DENND6BQ8NEG7 585 aa12.25□□□□□ -0.45
SHMT2-229ENST00000557348 CHPT1Q8WUD6 406 aa12.25□□□□□ -0.45
SHMT2-229ENST00000557348 EME1Q96AY2 570 aa12.25□□□□□ -0.45
SHMT2-229ENST00000557348 LRCH3Q96II8 777 aa12.25□□□□□ -0.45
SHMT2-229ENST00000557348 PKP4Q99569 1192 aa12.25□□□□□ -0.45
SHMT2-229ENST00000557348 SLX1AQ9BQ83 275 aa12.25□□□□□ -0.45
SHMT2-229ENST00000557348 TIMM29Q9BSF4 260 aa12.25□□□□□ -0.45
SHMT2-229ENST00000557348 DPY30Q9C005 99 aa12.25□□□□□ -0.45
SHMT2-229ENST00000557348 PCBD2Q9H0N5 130 aa12.25□□□□□ -0.45
SHMT2-229ENST00000557348 SLC52A3Q9NQ40 469 aa12.25□□□□□ -0.45
SHMT2-229ENST00000557348 CD300AQ9UGN4 299 aa12.25□□□□□ -0.45
SHMT2-229ENST00000557348 DYRK1BQ9Y463 629 aa12.25□□□□□ -0.45
SHMT2-229ENST00000557348 PIAS3Q9Y6X2 628 aa12.25□□□□□ -0.45
SHMT2-229ENST00000557348 CKAP5Q14008 2032 aa12.24□□□□□ -0.45
SHMT2-229ENST00000557348 ANKRD28O15084 1053 aa12.24□□□□□ -0.45
SHMT2-229ENST00000557348 SERPINB7O75635 380 aa12.24□□□□□ -0.45
SHMT2-229ENST00000557348 MYO1DO94832 1006 aa12.24□□□□□ -0.45
SHMT2-229ENST00000557348 PDYNP01213 254 aa12.24□□□□□ -0.45
SHMT2-229ENST00000557348 HOXC4P09017 264 aaPredicted RBP12.24□□□□□ -0.45
SHMT2-229ENST00000557348 G6PDP11413 515 aa12.24□□□□□ -0.45
SHMT2-229ENST00000557348 XRCC1P18887 633 aaPredicted RBP12.24□□□□□ -0.45
SHMT2-229ENST00000557348 ITPKAP23677 461 aa12.24□□□□□ -0.45
SHMT2-229ENST00000557348 ACADLP28330 430 aa12.24□□□□□ -0.45
SHMT2-229ENST00000557348 PCSK6P29122 969 aa12.24□□□□□ -0.45
SHMT2-229ENST00000557348 PDHA2P29803 388 aa12.24□□□□□ -0.45
SHMT2-229ENST00000557348 DPP6P42658 865 aa12.24□□□□□ -0.45
SHMT2-229ENST00000557348 BDKRB1P46663 353 aa12.24□□□□□ -0.45
SHMT2-229ENST00000557348 SLC7A2P52569 658 aa12.24□□□□□ -0.45
SHMT2-229ENST00000557348 SEC13P55735 322 aa12.24□□□□□ -0.45
SHMT2-229ENST00000557348 EEFSECP57772 596 aaKnown RBP12.24□□□□□ -0.45
SHMT2-229ENST00000557348 BCL2A1Q16548 175 aa12.24□□□□□ -0.45
SHMT2-229ENST00000557348 HIST2H2ACQ16777 129 aaPredicted RBP12.24□□□□□ -0.45
SHMT2-229ENST00000557348 AAK1Q2M2I8 961 aa12.24□□□□□ -0.45
SHMT2-229ENST00000557348 AASDHQ4L235 1098 aaPredicted RBP12.24□□□□□ -0.45
SHMT2-229ENST00000557348 RFTN2Q52LD8 501 aaPredicted RBP12.24□□□□□ -0.45
SHMT2-229ENST00000557348 HIST2H2AA3Q6FI13 130 aa12.24□□□□□ -0.45
SHMT2-229ENST00000557348 PPP4R4Q6NUP7 873 aa12.24□□□□□ -0.45
SHMT2-229ENST00000557348 IYDQ6PHW0 289 aa12.24□□□□□ -0.45
SHMT2-229ENST00000557348 CRTC3Q6UUV7 619 aa12.24□□□□□ -0.45
SHMT2-229ENST00000557348 C11orf96Q7Z7L8 435 aa12.24□□□□□ -0.45
Retrieved 100 of 20,778 RNA–protein pairs in 49.2 ms