RNA–Protein interactions for RNA: ENST00000556534.1

SCFD1-221, Transcript of sec1 family domain containing 1, humanhuman

TSL 5

Gene SCFD1, Length 864 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCFD1-221ENST00000556534 EEF1DP29692 281 aaKnown RBP3.92□□□□□ -1.78
SCFD1-221ENST00000556534 CAMK2DQ13557 499 aa3.92□□□□□ -1.78
SCFD1-221ENST00000556534 ZNF74Q16587 644 aa3.92□□□□□ -1.78
SCFD1-221ENST00000556534 GPR33Q49SQ1 333 aa3.92□□□□□ -1.78
SCFD1-221ENST00000556534 ZNF613Q6PF04 617 aa3.92□□□□□ -1.78
SCFD1-221ENST00000556534 LEKR1Q6ZMV7 388 aa3.92□□□□□ -1.78
SCFD1-221ENST00000556534 MFN1Q8IWA4 741 aa3.92□□□□□ -1.78
SCFD1-221ENST00000556534 CAMKVQ8NCB2 501 aa3.92□□□□□ -1.78
SCFD1-221ENST00000556534 SLC37A3Q8NCC5 494 aa3.92□□□□□ -1.78
SCFD1-221ENST00000556534 MRPS27Q92552 414 aaKnown RBP3.92□□□□□ -1.78
SCFD1-221ENST00000556534 PROX1Q92786 737 aa3.92□□□□□ -1.78
SCFD1-221ENST00000556534 NSMCE3Q96MG7 304 aa3.92□□□□□ -1.78
SCFD1-221ENST00000556534 KRT12Q99456 494 aa3.92□□□□□ -1.78
SCFD1-221ENST00000556534 SYT15Q9BQS2 421 aa3.92□□□□□ -1.78
SCFD1-221ENST00000556534 NAA11Q9BSU3 229 aaPredicted RBP3.92□□□□□ -1.78
SCFD1-221ENST00000556534 SYT11Q9BT88 431 aa3.92□□□□□ -1.78
SCFD1-221ENST00000556534 FAM129AQ9BZQ8 928 aa3.92□□□□□ -1.78
SCFD1-221ENST00000556534 TBC1D7Q9P0N9 293 aa3.92□□□□□ -1.78
SCFD1-221ENST00000556534 C19orf25Q9UFG5 118 aaPredicted RBP3.92□□□□□ -1.78
SCFD1-221ENST00000556534 PPP1R3CQ9UQK1 317 aa3.92□□□□□ -1.78
SCFD1-221ENST00000556534 LIPGQ9Y5X9 500 aa3.92□□□□□ -1.78
SCFD1-221ENST00000556534 RNF215Q9Y6U7 377 aa3.92□□□□□ -1.78
SCFD1-221ENST00000556534 R4GN57 208 aa3.92□□□□□ -1.78
SCFD1-221ENST00000556534 IGLV7-46A0A075B6I9 117 aa3.91□□□□□ -1.78
SCFD1-221ENST00000556534 TRAV24A0A0B4J272 114 aa3.91□□□□□ -1.78
SCFD1-221ENST00000556534 CCDC188H7C350 402 aa3.91□□□□□ -1.78
SCFD1-221ENST00000556534 EXTL3O43909 919 aa3.91□□□□□ -1.78
SCFD1-221ENST00000556534 KRT33AO76009 404 aa3.91□□□□□ -1.78
SCFD1-221ENST00000556534 RECQL5O94762 991 aaPredicted RBP3.91□□□□□ -1.78
SCFD1-221ENST00000556534 NXPH2O95156 264 aa3.91□□□□□ -1.78
SCFD1-221ENST00000556534 TBX6O95947 436 aaPredicted RBP3.91□□□□□ -1.78
SCFD1-221ENST00000556534 ATP1B1P05026 303 aa3.91□□□□□ -1.78
SCFD1-221ENST00000556534 HSPA4P34932 840 aa3.91□□□□□ -1.78
SCFD1-221ENST00000556534 MMP12P39900 470 aa3.91□□□□□ -1.78
SCFD1-221ENST00000556534 CSNK2BP67870 215 aa3.91□□□□□ -1.78
SCFD1-221ENST00000556534 DLK1P80370 383 aa3.91□□□□□ -1.78
SCFD1-221ENST00000556534 MZT1Q08AG7 82 aa3.91□□□□□ -1.78
SCFD1-221ENST00000556534 RASGEF1BQ0VAM2 473 aa3.91□□□□□ -1.78
SCFD1-221ENST00000556534 TRAP1Q12931 704 aaKnown RBP3.91□□□□□ -1.78
SCFD1-221ENST00000556534 DRP2Q13474 957 aa3.91□□□□□ -1.78
SCFD1-221ENST00000556534 HYAL4Q2M3T9 481 aa3.91□□□□□ -1.78
SCFD1-221ENST00000556534 HLA-BQ31612 363 aa3.91□□□□□ -1.78
SCFD1-221ENST00000556534 BSPRYQ5W0U4 402 aa3.91□□□□□ -1.78
SCFD1-221ENST00000556534 CHST3Q7LGC8 479 aa3.91□□□□□ -1.78
SCFD1-221ENST00000556534 RYBPQ8N488 228 aaPredicted RBP3.91□□□□□ -1.78
SCFD1-221ENST00000556534 UBE2Q2Q8WVN8 375 aa3.91□□□□□ -1.78
SCFD1-221ENST00000556534 KCNE4Q8WWG9 221 aa3.91□□□□□ -1.78
SCFD1-221ENST00000556534 EXT2Q93063 718 aa3.91□□□□□ -1.78
SCFD1-221ENST00000556534 ZNF486Q96H40 463 aaPredicted RBP3.91□□□□□ -1.78
SCFD1-221ENST00000556534 NECTIN4Q96NY8 510 aa3.91□□□□□ -1.78
SCFD1-221ENST00000556534 FGFBP2Q9BYJ0 223 aa3.91□□□□□ -1.78
SCFD1-221ENST00000556534 OR10A4Q9H209 315 aa3.91□□□□□ -1.78
SCFD1-221ENST00000556534 CCDC177Q9NQR7 707 aaPredicted RBP3.91□□□□□ -1.78
SCFD1-221ENST00000556534 GSN-AS1Q9NRJ2 163 aa3.91□□□□□ -1.78
SCFD1-221ENST00000556534 A0A087WUV0 522 aaPredicted RBP3.9□□□□□ -1.79
SCFD1-221ENST00000556534 A0A0J9YWU9 116 aa3.9□□□□□ -1.79
SCFD1-221ENST00000556534 MEX3AA1L020 520 aaKnown RBP3.9□□□□□ -1.79
SCFD1-221ENST00000556534 SNURFLB1AK76 121 aa3.9□□□□□ -1.79
SCFD1-221ENST00000556534 H7C423 109 aa3.9□□□□□ -1.79
SCFD1-221ENST00000556534 TEX28O15482 410 aa3.9□□□□□ -1.79
SCFD1-221ENST00000556534 DCXO43602 365 aa3.9□□□□□ -1.79
SCFD1-221ENST00000556534 SNX3O60493 162 aa3.9□□□□□ -1.79
SCFD1-221ENST00000556534 RPS6KA5O75582 802 aa3.9□□□□□ -1.79
SCFD1-221ENST00000556534 ERCC2P18074 760 aa3.9□□□□□ -1.79
SCFD1-221ENST00000556534 DNA2P51530 1060 aa3.9□□□□□ -1.79
SCFD1-221ENST00000556534 PTGISQ16647 500 aa3.9□□□□□ -1.79
SCFD1-221ENST00000556534 SUSD4Q5VX71 490 aa3.9□□□□□ -1.79
SCFD1-221ENST00000556534 FAAP20Q6NZ36 180 aa3.9□□□□□ -1.79
SCFD1-221ENST00000556534 PPP1R21Q6ZMI0 780 aa3.9□□□□□ -1.79
SCFD1-221ENST00000556534 CATSPERDQ86XM0 798 aa3.9□□□□□ -1.79
SCFD1-221ENST00000556534 NOA1Q8NC60 698 aaKnown RBP3.9□□□□□ -1.79
SCFD1-221ENST00000556534 CENPTQ96BT3 561 aa3.9□□□□□ -1.79
SCFD1-221ENST00000556534 C18orf12Q96KH6 178 aa3.9□□□□□ -1.79
SCFD1-221ENST00000556534 CNDP2Q96KP4 475 aaKnown RBP3.9□□□□□ -1.79
SCFD1-221ENST00000556534 RMDN2Q96LZ7 410 aa3.9□□□□□ -1.79
SCFD1-221ENST00000556534 LPAR4Q99677 370 aa3.9□□□□□ -1.79
SCFD1-221ENST00000556534 CDK19Q9BWU1 502 aa3.9□□□□□ -1.79
SCFD1-221ENST00000556534 TXNDC16Q9P2K2 825 aa3.9□□□□□ -1.79
SCFD1-221ENST00000556534 CHKBQ9Y259 395 aa3.9□□□□□ -1.79
SCFD1-221ENST00000556534 CACNA1FO60840 1977 aa3.9□□□□□ -1.79
SCFD1-221ENST00000556534 ANTXRLA6NF34 631 aa3.89□□□□□ -1.79
SCFD1-221ENST00000556534 MAGEC1O60732 1142 aa3.89□□□□□ -1.79
SCFD1-221ENST00000556534 CCDC175P0C221 793 aa3.89□□□□□ -1.79
SCFD1-221ENST00000556534 ZSCAN5DPP0CG00 497 aa3.89□□□□□ -1.79
SCFD1-221ENST00000556534 GSCP56915 257 aaPredicted RBP3.89□□□□□ -1.79
SCFD1-221ENST00000556534 KRTAP10-12P60413 245 aa3.89□□□□□ -1.79
SCFD1-221ENST00000556534 EFTUD2Q15029 972 aaKnown RBP eCLIP3.89□□□□□ -1.79
SCFD1-221ENST00000556534 E2F5Q15329 346 aa3.89□□□□□ -1.79
SCFD1-221ENST00000556534 LPAL2Q16609 132 aa3.89□□□□□ -1.79
SCFD1-221ENST00000556534 LACTB2Q53H82 288 aaPredicted RBP3.89□□□□□ -1.79
SCFD1-221ENST00000556534 C1orf141Q5JVX7 400 aa3.89□□□□□ -1.79
SCFD1-221ENST00000556534 CCDC186Q7Z3E2 898 aa3.89□□□□□ -1.79
SCFD1-221ENST00000556534 MYPOPQ86VE0 399 aaPredicted RBP3.89□□□□□ -1.79
SCFD1-221ENST00000556534 ZNF519Q8TB69 540 aa3.89□□□□□ -1.79
SCFD1-221ENST00000556534 PIK3R3Q92569 461 aa3.89□□□□□ -1.79
SCFD1-221ENST00000556534 ARHGAP45Q92619 1136 aa3.89□□□□□ -1.79
SCFD1-221ENST00000556534 FER1L6-AS2Q96M78 137 aa3.89□□□□□ -1.79
SCFD1-221ENST00000556534 ZNF300Q96RE9 604 aaPredicted RBP3.89□□□□□ -1.79
SCFD1-221ENST00000556534 USP28Q96RU2 1077 aa3.89□□□□□ -1.79
SCFD1-221ENST00000556534 DGCR6LQ9BY27 220 aa3.89□□□□□ -1.79
Retrieved 100 of 20,778 RNA–protein pairs in 25.9 ms