RNA–Protein interactions for RNA: ENST00000556412.4

VIPAS39-208, Transcript of VPS33B interacting protein, apical-basolateral polarity regulator, spe-39 homolog, humanhuman

TSL 2 BASIC

Gene VIPAS39, Length 1,832 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VIPAS39-208ENST00000556412 PRM3Q9NNZ6 103 aa13.5□□□□□ -0.25
VIPAS39-208ENST00000556412 PDE7BQ9NP56 450 aa13.5□□□□□ -0.25
VIPAS39-208ENST00000556412 LOXL2Q9Y4K0 774 aa13.5□□□□□ -0.25
VIPAS39-208ENST00000556412 PIEZO1Q92508 2521 aa13.5□□□□□ -0.25
VIPAS39-208ENST00000556412 IGKV1-8A0A0C4DH67 115 aa13.5□□□□□ -0.25
VIPAS39-208ENST00000556412 WDR91A4D1P6 747 aa13.5□□□□□ -0.25
VIPAS39-208ENST00000556412 EFCAB7A8K855 629 aa13.5□□□□□ -0.25
VIPAS39-208ENST00000556412 CLGNO14967 610 aa13.5□□□□□ -0.25
VIPAS39-208ENST00000556412 TM9SF1O15321 606 aa13.5□□□□□ -0.25
VIPAS39-208ENST00000556412 PRPF4O43172 522 aaKnown RBP eCLIP13.5□□□□□ -0.25
VIPAS39-208ENST00000556412 SUPT7LO94864 414 aa13.5□□□□□ -0.25
VIPAS39-208ENST00000556412 ZWINTO95229 277 aa13.5□□□□□ -0.25
VIPAS39-208ENST00000556412 EBLN1P0CF75 366 aa13.5□□□□□ -0.25
VIPAS39-208ENST00000556412 NELFEP18615 380 aaKnown RBP13.5□□□□□ -0.25
VIPAS39-208ENST00000556412 TSPAN8P19075 237 aa13.5□□□□□ -0.25
VIPAS39-208ENST00000556412 GNAZP19086 355 aa13.5□□□□□ -0.25
VIPAS39-208ENST00000556412 PRKAA2P54646 552 aa13.5□□□□□ -0.25
VIPAS39-208ENST00000556412 HERVK_113P63132 956 aa13.5□□□□□ -0.25
VIPAS39-208ENST00000556412 SH3BP2P78314 561 aa13.5□□□□□ -0.25
VIPAS39-208ENST00000556412 NFKB2Q00653 900 aa13.5□□□□□ -0.25
VIPAS39-208ENST00000556412 MEF2AQ02078 507 aaPredicted RBP13.5□□□□□ -0.25
VIPAS39-208ENST00000556412 FOXM1Q08050 763 aa13.5□□□□□ -0.25
VIPAS39-208ENST00000556412 MPP2Q14168 576 aa13.5□□□□□ -0.25
VIPAS39-208ENST00000556412 PCLAFQ15004 111 aa13.5□□□□□ -0.25
VIPAS39-208ENST00000556412 C3orf38Q5JPI3 329 aa13.5□□□□□ -0.25
VIPAS39-208ENST00000556412 TMTC4Q5T4D3 741 aa13.5□□□□□ -0.25
VIPAS39-208ENST00000556412 FCRL6Q6DN72 434 aa13.5□□□□□ -0.25
VIPAS39-208ENST00000556412 RAB11FIP2Q7L804 512 aa13.5□□□□□ -0.25
VIPAS39-208ENST00000556412 GOLGA7Q7Z5G4 137 aa13.5□□□□□ -0.25
VIPAS39-208ENST00000556412 KMT5CQ86Y97 462 aa13.5□□□□□ -0.25
VIPAS39-208ENST00000556412 MYLK4Q86YV6 388 aaPredicted RBP13.5□□□□□ -0.25
VIPAS39-208ENST00000556412 PLD3Q8IV08 490 aa13.5□□□□□ -0.25
VIPAS39-208ENST00000556412 CARFQ8N187 725 aa13.5□□□□□ -0.25
VIPAS39-208ENST00000556412 KLHL6Q8WZ60 621 aa13.5□□□□□ -0.25
VIPAS39-208ENST00000556412 N4BP2L2Q92802 583 aaPredicted RBP13.5□□□□□ -0.25
VIPAS39-208ENST00000556412 ATP6V1E2Q96A05 226 aa13.5□□□□□ -0.25
VIPAS39-208ENST00000556412 TCTN2Q96GX1 697 aa13.5□□□□□ -0.25
VIPAS39-208ENST00000556412 PKNOX2Q96KN3 472 aa13.5□□□□□ -0.25
VIPAS39-208ENST00000556412 NSUN5Q96P11 429 aaKnown RBP13.5□□□□□ -0.25
VIPAS39-208ENST00000556412 ERVK-6Q9BXR3 956 aa13.5□□□□□ -0.25
VIPAS39-208ENST00000556412 NKIRAS1Q9NYS0 192 aa13.5□□□□□ -0.25
VIPAS39-208ENST00000556412 SNX7Q9UNH6 387 aa13.5□□□□□ -0.25
VIPAS39-208ENST00000556412 CEP250Q9BV73 2442 aa13.49□□□□□ -0.25
VIPAS39-208ENST00000556412 E2F3O00716 465 aa13.49□□□□□ -0.25
VIPAS39-208ENST00000556412 HGSO14964 777 aaPredicted RBP13.49□□□□□ -0.25
VIPAS39-208ENST00000556412 FKBP9O95302 570 aa13.49□□□□□ -0.25
VIPAS39-208ENST00000556412 SPINK2P20155 84 aa13.49□□□□□ -0.25
VIPAS39-208ENST00000556412 VARSP26640 1264 aaKnown RBP13.49□□□□□ -0.25
VIPAS39-208ENST00000556412 ALDH3A1P30838 453 aa13.49□□□□□ -0.25
VIPAS39-208ENST00000556412 CCR8P51685 355 aa13.49□□□□□ -0.25
VIPAS39-208ENST00000556412 CDH13P55290 713 aa13.49□□□□□ -0.25
VIPAS39-208ENST00000556412 CYP4F3Q08477 520 aa13.49□□□□□ -0.25
VIPAS39-208ENST00000556412 GTF2H2Q13888 395 aa13.49□□□□□ -0.25
VIPAS39-208ENST00000556412 NAA25Q14CX7 972 aa13.49□□□□□ -0.25
VIPAS39-208ENST00000556412 RBBP7Q16576 425 aa13.49□□□□□ -0.25
VIPAS39-208ENST00000556412 XKR6Q5GH73 641 aa13.49□□□□□ -0.25
VIPAS39-208ENST00000556412 CFAP157Q5JU67 520 aa13.49□□□□□ -0.25
VIPAS39-208ENST00000556412 HHATQ5VTY9 493 aa13.49□□□□□ -0.25
VIPAS39-208ENST00000556412 GTF2H2CQ6P1K8 395 aa13.49□□□□□ -0.25
VIPAS39-208ENST00000556412 TMPRSS7Q7RTY8 843 aa13.49□□□□□ -0.25
VIPAS39-208ENST00000556412 KLHDC8AQ8IYD2 350 aa13.49□□□□□ -0.25
VIPAS39-208ENST00000556412 SLC41A2Q96JW4 573 aa13.49□□□□□ -0.25
VIPAS39-208ENST00000556412 FCRL4Q96PJ5 515 aa13.49□□□□□ -0.25
VIPAS39-208ENST00000556412 PLCD4Q9BRC7 762 aa13.49□□□□□ -0.25
VIPAS39-208ENST00000556412 CAPS2Q9BXY5 557 aa13.49□□□□□ -0.25
VIPAS39-208ENST00000556412 IPPKQ9H8X2 491 aa13.49□□□□□ -0.25
VIPAS39-208ENST00000556412 FAM60AQ9NP50 221 aa13.49□□□□□ -0.25
VIPAS39-208ENST00000556412 SEMA4BQ9NPR2 832 aaPredicted RBP13.49□□□□□ -0.25
VIPAS39-208ENST00000556412 OXSMQ9NWU1 459 aa13.49□□□□□ -0.25
VIPAS39-208ENST00000556412 IRAK4Q9NWZ3 460 aa13.49□□□□□ -0.25
VIPAS39-208ENST00000556412 OCIAD1Q9NX40 245 aa13.49□□□□□ -0.25
VIPAS39-208ENST00000556412 PCTPQ9UKL6 214 aa13.49□□□□□ -0.25
VIPAS39-208ENST00000556412 CCDC187A0A096LP49 1063 aa13.48□□□□□ -0.25
VIPAS39-208ENST00000556412 A0A0J9YVX5 310 aa13.48□□□□□ -0.25
VIPAS39-208ENST00000556412 PMS2P1A4D2B8 440 aa13.48□□□□□ -0.25
VIPAS39-208ENST00000556412 HAT1O14929 419 aa13.48□□□□□ -0.25
VIPAS39-208ENST00000556412 RPS17P08708 135 aaKnown RBP13.48□□□□□ -0.25
VIPAS39-208ENST00000556412 JMJD7P0C870 316 aa13.48□□□□□ -0.25
VIPAS39-208ENST00000556412 NEFHP12036 1026 aa13.48□□□□□ -0.25
VIPAS39-208ENST00000556412 CCL4P13236 92 aa13.48□□□□□ -0.25
VIPAS39-208ENST00000556412 FOLR1P15328 257 aa13.48□□□□□ -0.25
VIPAS39-208ENST00000556412 IMPDH1P20839 514 aa13.48□□□□□ -0.25
VIPAS39-208ENST00000556412 PIK3CGP48736 1102 aa13.48□□□□□ -0.25
VIPAS39-208ENST00000556412 MAPK10P53779 464 aa13.48□□□□□ -0.25
VIPAS39-208ENST00000556412 NAGLUP54802 743 aa13.48□□□□□ -0.25
VIPAS39-208ENST00000556412 IRF8Q02556 426 aa13.48□□□□□ -0.25
VIPAS39-208ENST00000556412 GPR19Q15760 415 aa13.48□□□□□ -0.25
VIPAS39-208ENST00000556412 ZNF678Q5SXM1 525 aa13.48□□□□□ -0.25
VIPAS39-208ENST00000556412 NXPE4Q6UWF7 544 aa13.48□□□□□ -0.25
VIPAS39-208ENST00000556412 PPP1R14CQ8TAE6 165 aa13.48□□□□□ -0.25
VIPAS39-208ENST00000556412 SREK1Q8WXA9 508 aaKnown RBP13.48□□□□□ -0.25
VIPAS39-208ENST00000556412 ZUFSPQ96AP4 578 aa13.48□□□□□ -0.25
VIPAS39-208ENST00000556412 LIN37Q96GY3 246 aaPredicted RBP13.48□□□□□ -0.25
VIPAS39-208ENST00000556412 OR6C1Q96RD1 312 aa13.48□□□□□ -0.25
VIPAS39-208ENST00000556412 NOL11Q9H8H0 719 aaKnown RBP13.48□□□□□ -0.25
VIPAS39-208ENST00000556412 ACTR8Q9H981 624 aa13.48□□□□□ -0.25
VIPAS39-208ENST00000556412 GPRC5BQ9NZH0 403 aa13.48□□□□□ -0.25
VIPAS39-208ENST00000556412 SEMA5BQ9P283 1151 aa13.48□□□□□ -0.25
VIPAS39-208ENST00000556412 PISDQ9UG56 409 aa13.48□□□□□ -0.25
VIPAS39-208ENST00000556412 SATB2Q9UPW6 733 aa13.48□□□□□ -0.25
Retrieved 100 of 20,778 RNA–protein pairs in 30.4 ms