RNA–Protein interactions for RNA: ENST00000553837.5

SHMT2-207, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 5

Gene SHMT2, Length 2,152 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-207ENST00000553837 CST1P01037 141 aa11.91□□□□□ -0.5
SHMT2-207ENST00000553837 CAPN1P07384 714 aa11.91□□□□□ -0.5
SHMT2-207ENST00000553837 CNPP09543 421 aaKnown RBP11.91□□□□□ -0.5
SHMT2-207ENST00000553837 PSMB9P28065 219 aa11.91□□□□□ -0.5
SHMT2-207ENST00000553837 NUDT1P36639 197 aa11.91□□□□□ -0.5
SHMT2-207ENST00000553837 MRPS15P82914 257 aaKnown RBP11.91□□□□□ -0.5
SHMT2-207ENST00000553837 HTRA3P83110 453 aa11.91□□□□□ -0.5
SHMT2-207ENST00000553837 CYP4F8P98187 520 aa11.91□□□□□ -0.5
SHMT2-207ENST00000553837 TRAF3Q13114 568 aa11.91□□□□□ -0.5
SHMT2-207ENST00000553837 FADDQ13158 208 aa11.91□□□□□ -0.5
SHMT2-207ENST00000553837 CLCA4Q14CN2 919 aa11.91□□□□□ -0.5
SHMT2-207ENST00000553837 CDK10Q15131 360 aa11.91□□□□□ -0.5
SHMT2-207ENST00000553837 TJAP1Q5JTD0 557 aa11.91□□□□□ -0.5
SHMT2-207ENST00000553837 ARMC12Q5T9G4 340 aa11.91□□□□□ -0.5
SHMT2-207ENST00000553837 PRR23BQ6ZRT6 265 aa11.91□□□□□ -0.5
SHMT2-207ENST00000553837 GOLGA7Q7Z5G4 137 aa11.91□□□□□ -0.5
SHMT2-207ENST00000553837 CCDC28AQ8IWP9 274 aa11.91□□□□□ -0.5
SHMT2-207ENST00000553837 HJURPQ8NCD3 748 aaPredicted RBP11.91□□□□□ -0.5
SHMT2-207ENST00000553837 IL17RDQ8NFM7 739 aa11.91□□□□□ -0.5
SHMT2-207ENST00000553837 FBLIM1Q8WUP2 373 aa11.91□□□□□ -0.5
SHMT2-207ENST00000553837 TNKS2Q9H2K2 1166 aa11.91□□□□□ -0.5
SHMT2-207ENST00000553837 ACTL8Q9H568 366 aa11.91□□□□□ -0.5
SHMT2-207ENST00000553837 NSUN3Q9H649 340 aaKnown RBP11.91□□□□□ -0.5
SHMT2-207ENST00000553837 IL26Q9NPH9 171 aa11.91□□□□□ -0.5
SHMT2-207ENST00000553837 DDX28Q9NUL7 540 aaKnown RBP11.91□□□□□ -0.5
SHMT2-207ENST00000553837 SCN3BQ9NY72 215 aa11.91□□□□□ -0.5
SHMT2-207ENST00000553837 PCDHGA10Q9Y5H3 936 aa11.91□□□□□ -0.5
SHMT2-207ENST00000553837 ORC6Q9Y5N6 252 aa11.91□□□□□ -0.5
SHMT2-207ENST00000553837 CLDN24A6NM45 220 aa11.91□□□□□ -0.5
SHMT2-207ENST00000553837 CENPXA8MT69 81 aa11.91□□□□□ -0.5
SHMT2-207ENST00000553837 ANGPTL1O95841 491 aa11.91□□□□□ -0.5
SHMT2-207ENST00000553837 HNF1BP35680 557 aa11.91□□□□□ -0.5
SHMT2-207ENST00000553837 UGT2B10P36537 528 aa11.91□□□□□ -0.5
SHMT2-207ENST00000553837 MAP2K4P45985 399 aa11.91□□□□□ -0.5
SHMT2-207ENST00000553837 POLR2JP52435 117 aaKnown RBP11.91□□□□□ -0.5
SHMT2-207ENST00000553837 ERVK-8P63133 956 aa11.91□□□□□ -0.5
SHMT2-207ENST00000553837 MVKQ03426 396 aa11.91□□□□□ -0.5
SHMT2-207ENST00000553837 FCHO2Q0JRZ9 810 aa11.91□□□□□ -0.5
SHMT2-207ENST00000553837 CDH18Q13634 790 aa11.91□□□□□ -0.5
SHMT2-207ENST00000553837 RAB33AQ14088 237 aa11.91□□□□□ -0.5
SHMT2-207ENST00000553837 RFX4Q33E94 735 aa11.91□□□□□ -0.5
SHMT2-207ENST00000553837 HABP4Q5JVS0 413 aaKnown RBP11.91□□□□□ -0.5
SHMT2-207ENST00000553837 COLEC12Q5KU26 742 aa11.91□□□□□ -0.5
SHMT2-207ENST00000553837 SPOUT1Q5T280 376 aaKnown RBP11.91□□□□□ -0.5
SHMT2-207ENST00000553837 ELMOD2Q8IZ81 293 aa11.91□□□□□ -0.5
SHMT2-207ENST00000553837 SLC39A11Q8N1S5 342 aa11.91□□□□□ -0.5
SHMT2-207ENST00000553837 FNDC5Q8NAU1 212 aa11.91□□□□□ -0.5
SHMT2-207ENST00000553837 OR4F6Q8NGB9 312 aa11.91□□□□□ -0.5
SHMT2-207ENST00000553837 OR6F1Q8NGZ6 308 aa11.91□□□□□ -0.5
SHMT2-207ENST00000553837 ZNF296Q8WUU4 475 aaPredicted RBP11.91□□□□□ -0.5
SHMT2-207ENST00000553837 PDLIM5Q96HC4 596 aaKnown RBP11.91□□□□□ -0.5
SHMT2-207ENST00000553837 REXO5Q96IC2 774 aaKnown RBP11.91□□□□□ -0.5
SHMT2-207ENST00000553837 DEFB118Q96PH6 123 aa11.91□□□□□ -0.5
SHMT2-207ENST00000553837 DEPDC7Q96QD5 511 aa11.91□□□□□ -0.5
SHMT2-207ENST00000553837 DUSP21Q9H596 190 aa11.91□□□□□ -0.5
SHMT2-207ENST00000553837 C12orf4Q9NQ89 552 aa11.91□□□□□ -0.5
SHMT2-207ENST00000553837 NUDT4Q9NZJ9 180 aa11.91□□□□□ -0.5
SHMT2-207ENST00000553837 INSL5Q9Y5Q6 135 aa11.91□□□□□ -0.5
SHMT2-207ENST00000553837 A3GALT2U3KPV4 340 aa11.91□□□□□ -0.5
SHMT2-207ENST00000553837 EFCAB9A8MZ26 197 aa11.9□□□□□ -0.5
SHMT2-207ENST00000553837 XPNPEP2O43895 674 aa11.9□□□□□ -0.5
SHMT2-207ENST00000553837 HS6ST1O60243 411 aa11.9□□□□□ -0.5
SHMT2-207ENST00000553837 MRPS14O60783 128 aaKnown RBP11.9□□□□□ -0.5
SHMT2-207ENST00000553837 GUCA1CO95843 209 aa11.9□□□□□ -0.5
SHMT2-207ENST00000553837 OLFM2O95897 454 aa11.9□□□□□ -0.5
SHMT2-207ENST00000553837 BPIP17213 487 aa11.9□□□□□ -0.5
SHMT2-207ENST00000553837 JUNDP17535 347 aa11.9□□□□□ -0.5
SHMT2-207ENST00000553837 FSHRP23945 695 aa11.9□□□□□ -0.5
SHMT2-207ENST00000553837 GDF5P43026 501 aa11.9□□□□□ -0.5
SHMT2-207ENST00000553837 IL5RAQ01344 420 aa11.9□□□□□ -0.5
SHMT2-207ENST00000553837 DGCR6Q14129 220 aa11.9□□□□□ -0.5
SHMT2-207ENST00000553837 VEPH1Q14D04 833 aa11.9□□□□□ -0.5
SHMT2-207ENST00000553837 ABRAXAS2Q15018 415 aa11.9□□□□□ -0.5
SHMT2-207ENST00000553837 PCBP2Q15366 365 aaKnown RBP eCLIP11.9□□□□□ -0.5
SHMT2-207ENST00000553837 ZFP69Q49AA0 526 aa11.9□□□□□ -0.5
SHMT2-207ENST00000553837 ZC3H12BQ5HYM0 836 aaKnown RBP11.9□□□□□ -0.5
SHMT2-207ENST00000553837 ATAD3CQ5T2N8 411 aa11.9□□□□□ -0.5
SHMT2-207ENST00000553837 GAREM2Q75VX8 874 aa11.9□□□□□ -0.5
SHMT2-207ENST00000553837 GDPD3Q7L5L3 318 aa11.9□□□□□ -0.5
SHMT2-207ENST00000553837 TSPAN33Q86UF1 283 aa11.9□□□□□ -0.5
SHMT2-207ENST00000553837 RALGPS2Q86X27 583 aaPredicted RBP11.9□□□□□ -0.5
SHMT2-207ENST00000553837 METTL4Q8N3J2 472 aa11.9□□□□□ -0.5
SHMT2-207ENST00000553837 DTWD1Q8N5C7 304 aa11.9□□□□□ -0.5
SHMT2-207ENST00000553837 DCAF4L2Q8NA75 395 aa11.9□□□□□ -0.5
SHMT2-207ENST00000553837 SETD9Q8NE22 299 aa11.9□□□□□ -0.5
SHMT2-207ENST00000553837 GRPEL2Q8TAA5 225 aa11.9□□□□□ -0.5
SHMT2-207ENST00000553837 FIG4Q92562 907 aa11.9□□□□□ -0.5
SHMT2-207ENST00000553837 ASB8Q9H765 288 aa11.9□□□□□ -0.5
SHMT2-207ENST00000553837 ZFYVE1Q9HBF4 777 aa11.9□□□□□ -0.5
SHMT2-207ENST00000553837 DIABLOQ9NR28 239 aa11.9□□□□□ -0.5
SHMT2-207ENST00000553837 OPTCQ9UBM4 332 aa11.9□□□□□ -0.5
SHMT2-207ENST00000553837 PNMA8BQ9ULN7 279 aaPredicted RBP11.9□□□□□ -0.5
SHMT2-207ENST00000553837 COMMD10Q9Y6G5 202 aa11.9□□□□□ -0.5
SHMT2-207ENST00000553837 ARHGAP33O14559 1287 aa11.89□□□□□ -0.51
SHMT2-207ENST00000553837 FFAR2O15552 330 aa11.89□□□□□ -0.51
SHMT2-207ENST00000553837 TRBC1P01850 177 aa11.89□□□□□ -0.51
SHMT2-207ENST00000553837 G6PDP11413 515 aa11.89□□□□□ -0.51
SHMT2-207ENST00000553837 GGT1P19440 569 aa11.89□□□□□ -0.51
SHMT2-207ENST00000553837 CD6P30203 668 aa11.89□□□□□ -0.51
SHMT2-207ENST00000553837 CD70P32970 193 aa11.89□□□□□ -0.51
Retrieved 100 of 20,778 RNA–protein pairs in 31.6 ms