RNA–Protein interactions for RNA: ENST00000547672.5

PTCH1-215, Transcript of patched 1, humanhuman

TSL 1 (best)

Gene PTCH1, Length 881 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTCH1-215ENST00000547672 QRFPRQ96P65 431 aa12.99□□□□□ -0.33
PTCH1-215ENST00000547672 INSM2Q96T92 566 aaPredicted RBP12.99□□□□□ -0.33
PTCH1-215ENST00000547672 VCX3BQ9H321 246 aa12.99□□□□□ -0.33
PTCH1-215ENST00000547672 LTB4R2Q9NPC1 389 aa12.99□□□□□ -0.33
PTCH1-215ENST00000547672 FARSBQ9NSD9 589 aaKnown RBP12.99□□□□□ -0.33
PTCH1-215ENST00000547672 SIRT5Q9NXA8 310 aa12.99□□□□□ -0.33
PTCH1-215ENST00000547672 WSB2Q9NYS7 404 aaPredicted RBP12.99□□□□□ -0.33
PTCH1-215ENST00000547672 TMEM181Q9P2C4 612 aa12.99□□□□□ -0.33
PTCH1-215ENST00000547672 STX18Q9P2W9 335 aaKnown RBP12.99□□□□□ -0.33
PTCH1-215ENST00000547672 CA14Q9ULX7 337 aa12.99□□□□□ -0.33
PTCH1-215ENST00000547672 POLR3HQ9Y535 204 aaPredicted RBP12.99□□□□□ -0.33
PTCH1-215ENST00000547672 PCDHB11Q9Y5F2 797 aa12.99□□□□□ -0.33
PTCH1-215ENST00000547672 PCDHGA7Q9Y5G6 932 aa12.99□□□□□ -0.33
PTCH1-215ENST00000547672 DGKBQ9Y6T7 804 aa12.99□□□□□ -0.33
PTCH1-215ENST00000547672 ATG2BQ96BY7 2078 aa12.98□□□□□ -0.33
PTCH1-215ENST00000547672 POM121BA6NF01 834 aa12.98□□□□□ -0.33
PTCH1-215ENST00000547672 ANKDD1BA6NHY2 528 aa12.98□□□□□ -0.33
PTCH1-215ENST00000547672 PRR19A6NJB7 356 aa12.98□□□□□ -0.33
PTCH1-215ENST00000547672 SHISA7A6NL88 538 aa12.98□□□□□ -0.33
PTCH1-215ENST00000547672 SOX1O00570 391 aaPredicted RBP12.98□□□□□ -0.33
PTCH1-215ENST00000547672 GMNNO75496 209 aa12.98□□□□□ -0.33
PTCH1-215ENST00000547672 KCNH1O95259 989 aa12.98□□□□□ -0.33
PTCH1-215ENST00000547672 RASGRP1O95267 797 aa12.98□□□□□ -0.33
PTCH1-215ENST00000547672 MTHFD1P11586 935 aaKnown RBP12.98□□□□□ -0.33
PTCH1-215ENST00000547672 PCNAP12004 261 aa12.98□□□□□ -0.33
PTCH1-215ENST00000547672 CD72P21854 359 aa12.98□□□□□ -0.33
PTCH1-215ENST00000547672 S100A3P33764 101 aa12.98□□□□□ -0.33
PTCH1-215ENST00000547672 SHMT2P34897 504 aa12.98□□□□□ -0.33
PTCH1-215ENST00000547672 GSTM5P46439 218 aa12.98□□□□□ -0.33
PTCH1-215ENST00000547672 HNRNPFP52597 415 aaKnown RBP12.98□□□□□ -0.33
PTCH1-215ENST00000547672 NME5P56597 212 aa12.98□□□□□ -0.33
PTCH1-215ENST00000547672 C21orf58P58505 322 aa12.98□□□□□ -0.33
PTCH1-215ENST00000547672 HMGCS1Q01581 520 aa12.98□□□□□ -0.33
PTCH1-215ENST00000547672 SLC34A1Q06495 639 aa12.98□□□□□ -0.33
PTCH1-215ENST00000547672 ILF3Q12906 894 aaKnown RBP eCLIP12.98□□□□□ -0.33
PTCH1-215ENST00000547672 FLOT2Q14254 428 aa12.98□□□□□ -0.33
PTCH1-215ENST00000547672 TRIM25Q14258 630 aaKnown RBP12.98□□□□□ -0.33
PTCH1-215ENST00000547672 UBXN2BQ14CS0 331 aa12.98□□□□□ -0.33
PTCH1-215ENST00000547672 KIAA0040Q15053 153 aa12.98□□□□□ -0.33
PTCH1-215ENST00000547672 MAPKAPK3Q16644 382 aa12.98□□□□□ -0.33
PTCH1-215ENST00000547672 ZNF423Q2M1K9 1284 aa12.98□□□□□ -0.33
PTCH1-215ENST00000547672 USP39Q53GS9 565 aaKnown RBP12.98□□□□□ -0.33
PTCH1-215ENST00000547672 C8orf82Q6P1X6 216 aaPredicted RBP12.98□□□□□ -0.33
PTCH1-215ENST00000547672 TMIGD1Q6UXZ0 262 aa12.98□□□□□ -0.33
PTCH1-215ENST00000547672 Q6ZSR6 202 aa12.98□□□□□ -0.33
PTCH1-215ENST00000547672 ABI3BPQ7Z7G0 1075 aa12.98□□□□□ -0.33
PTCH1-215ENST00000547672 TMPRSS11BQ86T26 416 aa12.98□□□□□ -0.33
PTCH1-215ENST00000547672 HID1Q8IV36 788 aa12.98□□□□□ -0.33
PTCH1-215ENST00000547672 AVL9Q8NBF6 648 aa12.98□□□□□ -0.33
PTCH1-215ENST00000547672 GOLM1Q8NBJ4 401 aa12.98□□□□□ -0.33
PTCH1-215ENST00000547672 VPS37AQ8NEZ2 397 aa12.98□□□□□ -0.33
PTCH1-215ENST00000547672 ABHD11Q8NFV4 315 aa12.98□□□□□ -0.33
PTCH1-215ENST00000547672 SPDYE1Q8NFV5 336 aaPredicted RBP12.98□□□□□ -0.33
PTCH1-215ENST00000547672 CADM4Q8NFZ8 388 aa12.98□□□□□ -0.33
PTCH1-215ENST00000547672 OR9I1Q8NGQ6 314 aa12.98□□□□□ -0.33
PTCH1-215ENST00000547672 TESCQ96BS2 214 aa12.98□□□□□ -0.33
PTCH1-215ENST00000547672 CXorf40BQ96DE9 158 aa12.98□□□□□ -0.33
PTCH1-215ENST00000547672 ASB9Q96DX5 294 aa12.98□□□□□ -0.33
PTCH1-215ENST00000547672 LRCH3Q96II8 777 aa12.98□□□□□ -0.33
PTCH1-215ENST00000547672 CLPTM1LQ96KA5 538 aa12.98□□□□□ -0.33
PTCH1-215ENST00000547672 FCRL1Q96LA6 429 aa12.98□□□□□ -0.33
PTCH1-215ENST00000547672 EFHD1Q9BUP0 239 aa12.98□□□□□ -0.33
PTCH1-215ENST00000547672 GSDMCQ9BYG8 508 aa12.98□□□□□ -0.33
PTCH1-215ENST00000547672 KIR3DX1Q9H7L2 352 aa12.98□□□□□ -0.33
PTCH1-215ENST00000547672 OR6C2Q9NZP2 312 aa12.98□□□□□ -0.33
PTCH1-215ENST00000547672 GIMAP2Q9UG22 337 aa12.98□□□□□ -0.33
PTCH1-215ENST00000547672 EBF1Q9UH73 591 aa12.98□□□□□ -0.33
PTCH1-215ENST00000547672 KCNK6Q9Y257 313 aa12.98□□□□□ -0.33
PTCH1-215ENST00000547672 PCDHGA2Q9Y5H1 932 aa12.98□□□□□ -0.33
PTCH1-215ENST00000547672 A8MUI8 341 aa12.97□□□□□ -0.33
PTCH1-215ENST00000547672 ANKRD28O15084 1053 aa12.97□□□□□ -0.33
PTCH1-215ENST00000547672 ERN1O75460 977 aaKnown RBP12.97□□□□□ -0.33
PTCH1-215ENST00000547672 BCAS2O75934 225 aaPredicted RBP12.97□□□□□ -0.33
PTCH1-215ENST00000547672 FKBP9O95302 570 aa12.97□□□□□ -0.33
PTCH1-215ENST00000547672 HSD17B1P14061 328 aa12.97□□□□□ -0.33
PTCH1-215ENST00000547672 CAPN3P20807 821 aa12.97□□□□□ -0.33
PTCH1-215ENST00000547672 RPL10P27635 214 aaKnown RBP12.97□□□□□ -0.33
PTCH1-215ENST00000547672 NEK2P51955 445 aa12.97□□□□□ -0.33
PTCH1-215ENST00000547672 EEFSECP57772 596 aaKnown RBP12.97□□□□□ -0.33
PTCH1-215ENST00000547672 PWP1Q13610 501 aa12.97□□□□□ -0.33
PTCH1-215ENST00000547672 SLBPQ14493 270 aaKnown RBP eCLIP12.97□□□□□ -0.33
PTCH1-215ENST00000547672 TLR1Q15399 786 aa12.97□□□□□ -0.33
PTCH1-215ENST00000547672 RPE65Q16518 533 aa12.97□□□□□ -0.33
PTCH1-215ENST00000547672 ANO7Q6IWH7 933 aa12.97□□□□□ -0.33
PTCH1-215ENST00000547672 XKR5Q6UX68 686 aa12.97□□□□□ -0.33
PTCH1-215ENST00000547672 SLC36A4Q6YBV0 504 aa12.97□□□□□ -0.33
PTCH1-215ENST00000547672 PAGE2Q7Z2X7 111 aa12.97□□□□□ -0.33
PTCH1-215ENST00000547672 R3HCC1LQ7Z5L2 792 aaKnown RBP12.97□□□□□ -0.33
PTCH1-215ENST00000547672 HPS6Q86YV9 775 aa12.97□□□□□ -0.33
PTCH1-215ENST00000547672 SYT12Q8IV01 421 aa12.97□□□□□ -0.33
PTCH1-215ENST00000547672 ZNF687Q8N1G0 1237 aa12.97□□□□□ -0.33
PTCH1-215ENST00000547672 SPEM1Q8N4L4 309 aa12.97□□□□□ -0.33
PTCH1-215ENST00000547672 NATD1Q8N6N6 113 aa12.97□□□□□ -0.33
PTCH1-215ENST00000547672 TMEM145Q8NBT3 493 aa12.97□□□□□ -0.33
PTCH1-215ENST00000547672 FLCNQ8NFG4 579 aa12.97□□□□□ -0.33
PTCH1-215ENST00000547672 HUS1BQ8NHY5 278 aa12.97□□□□□ -0.33
PTCH1-215ENST00000547672 CHTF18Q8WVB6 975 aa12.97□□□□□ -0.33
PTCH1-215ENST00000547672 WDR60Q8WVS4 1066 aa12.97□□□□□ -0.33
PTCH1-215ENST00000547672 ZUFSPQ96AP4 578 aa12.97□□□□□ -0.33
PTCH1-215ENST00000547672 ITCHQ96J02 903 aa12.97□□□□□ -0.33
Retrieved 100 of 20,778 RNA–protein pairs in 32.3 ms