RNA–Protein interactions for RNA: ENST00000539506.5

SFSWAP-208, Transcript of splicing factor SWAP, humanhuman

TSL 5

Gene SFSWAP, Length 3,149 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SFSWAP-208ENST00000539506 WDR12Q9GZL7 423 aaKnown RBP12.21□□□□□ -0.46
SFSWAP-208ENST00000539506 QPCTLQ9NXS2 382 aa12.21□□□□□ -0.46
SFSWAP-208ENST00000539506 WWOXQ9NZC7 414 aa12.21□□□□□ -0.46
SFSWAP-208ENST00000539506 OPTCQ9UBM4 332 aa12.21□□□□□ -0.46
SFSWAP-208ENST00000539506 DLGAP4Q9Y2H0 992 aa12.21□□□□□ -0.46
SFSWAP-208ENST00000539506 GMPPBQ9Y5P6 360 aa12.21□□□□□ -0.46
SFSWAP-208ENST00000539506 PER2O15055 1255 aa12.2□□□□□ -0.46
SFSWAP-208ENST00000539506 HOXA2O43364 376 aa12.2□□□□□ -0.46
SFSWAP-208ENST00000539506 MFN2O95140 757 aa12.2□□□□□ -0.46
SFSWAP-208ENST00000539506 DGKAP23743 735 aa12.2□□□□□ -0.46
SFSWAP-208ENST00000539506 CLK3P49761 638 aaKnown RBP12.2□□□□□ -0.46
SFSWAP-208ENST00000539506 CYP4F8P98187 520 aa12.2□□□□□ -0.46
SFSWAP-208ENST00000539506 LMAN2Q12907 356 aa12.2□□□□□ -0.46
SFSWAP-208ENST00000539506 CPSF6Q16630 551 aaKnown RBP eCLIP12.2□□□□□ -0.46
SFSWAP-208ENST00000539506 DDX59Q5T1V6 619 aaKnown RBP eCLIP12.2□□□□□ -0.46
SFSWAP-208ENST00000539506 GPR153Q6NV75 609 aa12.2□□□□□ -0.46
SFSWAP-208ENST00000539506 TPGS1Q6ZTW0 290 aa12.2□□□□□ -0.46
SFSWAP-208ENST00000539506 TRIM46Q7Z4K8 759 aa12.2□□□□□ -0.46
SFSWAP-208ENST00000539506 OR8J3Q8NGG0 315 aa12.2□□□□□ -0.46
SFSWAP-208ENST00000539506 EGLN2Q96KS0 407 aa12.2□□□□□ -0.46
SFSWAP-208ENST00000539506 RBM4BQ9BQ04 359 aaKnown RBP12.2□□□□□ -0.46
SFSWAP-208ENST00000539506 RBM4Q9BWF3 364 aaKnown RBP12.2□□□□□ -0.46
SFSWAP-208ENST00000539506 DSN1Q9H410 356 aa12.2□□□□□ -0.46
SFSWAP-208ENST00000539506 RUBCNLQ9H714 662 aa12.2□□□□□ -0.46
SFSWAP-208ENST00000539506 PALMDQ9NP74 551 aa12.2□□□□□ -0.46
SFSWAP-208ENST00000539506 TAS2R16Q9NYV7 291 aa12.2□□□□□ -0.46
SFSWAP-208ENST00000539506 C3orf18Q9UK00 162 aa12.2□□□□□ -0.46
SFSWAP-208ENST00000539506 TTC34A8MYJ7 566 aa12.2□□□□□ -0.46
SFSWAP-208ENST00000539506 EFCAB9A8MZ26 197 aa12.2□□□□□ -0.46
SFSWAP-208ENST00000539506 MANBAO00462 879 aa12.2□□□□□ -0.46
SFSWAP-208ENST00000539506 PITPNM1O00562 1244 aa12.2□□□□□ -0.46
SFSWAP-208ENST00000539506 CREG1O75629 220 aa12.2□□□□□ -0.46
SFSWAP-208ENST00000539506 FKBP9O95302 570 aa12.2□□□□□ -0.46
SFSWAP-208ENST00000539506 PGRP06401 933 aa12.2□□□□□ -0.46
SFSWAP-208ENST00000539506 CCR7P32248 378 aa12.2□□□□□ -0.46
SFSWAP-208ENST00000539506 CDKN2CP42773 168 aa12.2□□□□□ -0.46
SFSWAP-208ENST00000539506 IFITM2Q01629 132 aa12.2□□□□□ -0.46
SFSWAP-208ENST00000539506 GBX1Q14549 363 aa12.2□□□□□ -0.46
SFSWAP-208ENST00000539506 USP39Q53GS9 565 aaKnown RBP12.2□□□□□ -0.46
SFSWAP-208ENST00000539506 LRRC73Q5JTD7 316 aa12.2□□□□□ -0.46
SFSWAP-208ENST00000539506 CRTC1Q6UUV9 634 aa12.2□□□□□ -0.46
SFSWAP-208ENST00000539506 MACC1Q6ZN28 852 aa12.2□□□□□ -0.46
SFSWAP-208ENST00000539506 FKBP9P1Q75LS8 142 aa12.2□□□□□ -0.46
SFSWAP-208ENST00000539506 BBS7Q8IWZ6 715 aa12.2□□□□□ -0.46
SFSWAP-208ENST00000539506 UBE2J2Q8N2K1 259 aa12.2□□□□□ -0.46
SFSWAP-208ENST00000539506 PXYLP1Q8TE99 480 aa12.2□□□□□ -0.46
SFSWAP-208ENST00000539506 PPP3R2Q96LZ3 170 aa12.2□□□□□ -0.46
SFSWAP-208ENST00000539506 ACPTQ9BZG2 426 aa12.2□□□□□ -0.46
SFSWAP-208ENST00000539506 TRIT1Q9H3H1 467 aaKnown RBP12.2□□□□□ -0.46
SFSWAP-208ENST00000539506 RERGLQ9H628 205 aa12.2□□□□□ -0.46
SFSWAP-208ENST00000539506 CLMPQ9H6B4 373 aa12.2□□□□□ -0.46
SFSWAP-208ENST00000539506 FAM8A1Q9UBU6 413 aa12.2□□□□□ -0.46
SFSWAP-208ENST00000539506 EIF3LQ9Y262 564 aaKnown RBP12.2□□□□□ -0.46
SFSWAP-208ENST00000539506 ORC6Q9Y5N6 252 aa12.2□□□□□ -0.46
SFSWAP-208ENST00000539506 DYTNA2CJ06 578 aa12.2□□□□□ -0.46
SFSWAP-208ENST00000539506 PRRG1O14668 218 aa12.2□□□□□ -0.46
SFSWAP-208ENST00000539506 ULK1O75385 1050 aa12.2□□□□□ -0.46
SFSWAP-208ENST00000539506 SOD2P04179 222 aa12.2□□□□□ -0.46
SFSWAP-208ENST00000539506 TNFRSF1BP20333 461 aa12.2□□□□□ -0.46
SFSWAP-208ENST00000539506 LIPAP38571 399 aa12.2□□□□□ -0.46
SFSWAP-208ENST00000539506 DAPP51397 102 aa12.2□□□□□ -0.46
SFSWAP-208ENST00000539506 DEPDC1Q5TB30 811 aa12.2□□□□□ -0.46
SFSWAP-208ENST00000539506 ZNF691Q5VV52 312 aa12.2□□□□□ -0.46
SFSWAP-208ENST00000539506 RSBN1Q5VWQ0 802 aaPredicted RBP12.2□□□□□ -0.46
SFSWAP-208ENST00000539506 VASH1Q7L8A9 365 aaPredicted RBP12.2□□□□□ -0.46
SFSWAP-208ENST00000539506 ZNF551Q7Z340 670 aaPredicted RBP12.2□□□□□ -0.46
SFSWAP-208ENST00000539506 AKAP14Q86UN6 197 aa12.2□□□□□ -0.46
SFSWAP-208ENST00000539506 ARMC8Q8IUR7 673 aa12.2□□□□□ -0.46
SFSWAP-208ENST00000539506 NXPE1Q8N323 547 aa12.2□□□□□ -0.46
SFSWAP-208ENST00000539506 SDR16C5Q8N3Y7 309 aa12.2□□□□□ -0.46
SFSWAP-208ENST00000539506 ATG16L2Q8NAA4 619 aa12.2□□□□□ -0.46
SFSWAP-208ENST00000539506 ATL1Q8WXF7 558 aa12.2□□□□□ -0.46
SFSWAP-208ENST00000539506 USP7Q93009 1102 aa12.2□□□□□ -0.46
SFSWAP-208ENST00000539506 FAM120BQ96EK7 910 aaKnown RBP12.2□□□□□ -0.46
SFSWAP-208ENST00000539506 TPD52L3Q96J77 140 aa12.2□□□□□ -0.46
SFSWAP-208ENST00000539506 NTMT1Q9BV86 223 aa12.2□□□□□ -0.46
SFSWAP-208ENST00000539506 DPY30Q9C005 99 aa12.2□□□□□ -0.46
SFSWAP-208ENST00000539506 GORASP2Q9H8Y8 452 aa12.2□□□□□ -0.46
SFSWAP-208ENST00000539506 DDX28Q9NUL7 540 aaKnown RBP12.2□□□□□ -0.46
SFSWAP-208ENST00000539506 PDP1Q9P0J1 537 aaPredicted RBP12.2□□□□□ -0.46
SFSWAP-208ENST00000539506 ANKMY1Q9P2S6 941 aa12.2□□□□□ -0.46
SFSWAP-208ENST00000539506 CRLS1Q9UJA2 301 aa12.2□□□□□ -0.46
SFSWAP-208ENST00000539506 TMPRSS11EQ9UL52 423 aa12.2□□□□□ -0.46
SFSWAP-208ENST00000539506 B3GNT3Q9Y2A9 372 aa12.2□□□□□ -0.46
SFSWAP-208ENST00000539506 TRBV5-3A0A0A0MS03 114 aa12.19□□□□□ -0.46
SFSWAP-208ENST00000539506 PRAMEF4O60810 478 aa12.19□□□□□ -0.46
SFSWAP-208ENST00000539506 OLFM2O95897 454 aa12.19□□□□□ -0.46
SFSWAP-208ENST00000539506 BCKDHAP12694 445 aa12.19□□□□□ -0.46
SFSWAP-208ENST00000539506 ITGALP20701 1170 aa12.19□□□□□ -0.46
SFSWAP-208ENST00000539506 LHCGRP22888 699 aa12.19□□□□□ -0.46
SFSWAP-208ENST00000539506 TACR1P25103 407 aa12.19□□□□□ -0.46
SFSWAP-208ENST00000539506 GNPDA1P46926 289 aa12.19□□□□□ -0.46
SFSWAP-208ENST00000539506 TRPC1P48995 793 aa12.19□□□□□ -0.46
SFSWAP-208ENST00000539506 RGS4P49798 205 aa12.19□□□□□ -0.46
SFSWAP-208ENST00000539506 PTSQ03393 145 aa12.19□□□□□ -0.46
SFSWAP-208ENST00000539506 ARHGEF7Q14155 803 aa12.19□□□□□ -0.46
SFSWAP-208ENST00000539506 ATP13A5Q4VNC0 1218 aa12.19□□□□□ -0.46
SFSWAP-208ENST00000539506 AGAP7PQ5VUJ5 663 aa12.19□□□□□ -0.46
SFSWAP-208ENST00000539506 PRAMEF9Q5VWM5 478 aa12.19□□□□□ -0.46
SFSWAP-208ENST00000539506 GAREM2Q75VX8 874 aa12.19□□□□□ -0.46
Retrieved 100 of 20,778 RNA–protein pairs in 56.1 ms