RNA–Protein interactions for RNA: ENST00000537004.5

CLIP1-208, Transcript of CAP-Gly domain containing linker protein 1, humanhuman

TSL 1 (best)

Gene CLIP1, Length 2,000 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP1-208ENST00000537004 ARL10Q8N8L6 244 aa11.58□□□□□ -0.56
CLIP1-208ENST00000537004 KDF1Q8NAX2 398 aaPredicted RBP11.58□□□□□ -0.56
CLIP1-208ENST00000537004 PATE1Q8WXA2 126 aa11.58□□□□□ -0.56
CLIP1-208ENST00000537004 COX14Q96I36 57 aa11.58□□□□□ -0.56
CLIP1-208ENST00000537004 HIC2Q96JB3 615 aa11.58□□□□□ -0.56
CLIP1-208ENST00000537004 ZNF382Q96SR6 550 aa11.58□□□□□ -0.56
CLIP1-208ENST00000537004 EFCAB1Q9HAE3 211 aa11.58□□□□□ -0.56
CLIP1-208ENST00000537004 SMOXQ9NWM0 555 aa11.58□□□□□ -0.56
CLIP1-208ENST00000537004 BTRCQ9Y297 605 aa11.58□□□□□ -0.56
CLIP1-208ENST00000537004 GPSM3Q9Y4H4 160 aa11.58□□□□□ -0.56
CLIP1-208ENST00000537004 TIMM22Q9Y584 194 aa11.58□□□□□ -0.56
CLIP1-208ENST00000537004 SORBS2O94875 1100 aaKnown RBP11.57□□□□□ -0.56
CLIP1-208ENST00000537004 GUCA1CO95843 209 aa11.57□□□□□ -0.56
CLIP1-208ENST00000537004 MT-CO3P00414 261 aa11.57□□□□□ -0.56
CLIP1-208ENST00000537004 GP1BAP07359 652 aa11.57□□□□□ -0.56
CLIP1-208ENST00000537004 CBSLP0DN79 551 aa11.57□□□□□ -0.56
CLIP1-208ENST00000537004 UROSP10746 265 aa11.57□□□□□ -0.56
CLIP1-208ENST00000537004 TEAD1P28347 426 aa11.57□□□□□ -0.56
CLIP1-208ENST00000537004 AKT1P31749 480 aa11.57□□□□□ -0.56
CLIP1-208ENST00000537004 CBSP35520 551 aa11.57□□□□□ -0.56
CLIP1-208ENST00000537004 ATP4BP51164 291 aa11.57□□□□□ -0.56
CLIP1-208ENST00000537004 PKNOX1P55347 436 aa11.57□□□□□ -0.56
CLIP1-208ENST00000537004 CTBSQ01459 385 aa11.57□□□□□ -0.56
CLIP1-208ENST00000537004 MAPRE2Q15555 327 aa11.57□□□□□ -0.56
CLIP1-208ENST00000537004 AGKQ53H12 422 aa11.57□□□□□ -0.56
CLIP1-208ENST00000537004 DET1Q7L5Y6 550 aa11.57□□□□□ -0.56
CLIP1-208ENST00000537004 PHYKPLQ8IUZ5 450 aa11.57□□□□□ -0.56
CLIP1-208ENST00000537004 FBXW8Q8N3Y1 598 aa11.57□□□□□ -0.56
CLIP1-208ENST00000537004 OR52B6Q8NGF0 335 aa11.57□□□□□ -0.56
CLIP1-208ENST00000537004 DLG3Q92796 817 aa11.57□□□□□ -0.56
CLIP1-208ENST00000537004 CCDC124Q96CT7 223 aaKnown RBP11.57□□□□□ -0.56
CLIP1-208ENST00000537004 TUBGCP3Q96CW5 907 aa11.57□□□□□ -0.56
CLIP1-208ENST00000537004 CCDC3Q9BQI4 270 aa11.57□□□□□ -0.56
CLIP1-208ENST00000537004 SYNDIG1Q9H7V2 258 aa11.57□□□□□ -0.56
CLIP1-208ENST00000537004 NDE1Q9NXR1 346 aa11.57□□□□□ -0.56
CLIP1-208ENST00000537004 CCDC167Q9P0B6 97 aa11.57□□□□□ -0.56
CLIP1-208ENST00000537004 KLHL42Q9P2K6 505 aa11.57□□□□□ -0.56
CLIP1-208ENST00000537004 GIMAP2Q9UG22 337 aa11.57□□□□□ -0.56
CLIP1-208ENST00000537004 POLG2Q9UHN1 485 aa11.57□□□□□ -0.56
CLIP1-208ENST00000537004 PTBP2Q9UKA9 531 aaKnown RBP11.57□□□□□ -0.56
CLIP1-208ENST00000537004 URB1O60287 2271 aaKnown RBP11.57□□□□□ -0.56
CLIP1-208ENST00000537004 NOBOXO60393 691 aa11.57□□□□□ -0.56
CLIP1-208ENST00000537004 VPS4BO75351 444 aa11.57□□□□□ -0.56
CLIP1-208ENST00000537004 MTX2O75431 263 aa11.57□□□□□ -0.56
CLIP1-208ENST00000537004 OR4F21O95013 312 aa11.57□□□□□ -0.56
CLIP1-208ENST00000537004 CHEK2O96017 543 aa11.57□□□□□ -0.56
CLIP1-208ENST00000537004 CDK4P11802 303 aa11.57□□□□□ -0.56
CLIP1-208ENST00000537004 ATP1B2P14415 290 aaPredicted RBP11.57□□□□□ -0.56
CLIP1-208ENST00000537004 VCLP18206 1134 aa11.57□□□□□ -0.56
CLIP1-208ENST00000537004 AOAHP28039 575 aa11.57□□□□□ -0.56
CLIP1-208ENST00000537004 CCR7P32248 378 aa11.57□□□□□ -0.56
CLIP1-208ENST00000537004 MTTPP55157 894 aa11.57□□□□□ -0.56
CLIP1-208ENST00000537004 STX1BP61266 288 aa11.57□□□□□ -0.56
CLIP1-208ENST00000537004 E2F1Q01094 437 aa11.57□□□□□ -0.56
CLIP1-208ENST00000537004 CDC16Q13042 620 aa11.57□□□□□ -0.56
CLIP1-208ENST00000537004 ART3Q13508 389 aa11.57□□□□□ -0.56
CLIP1-208ENST00000537004 GTF2H2Q13888 395 aa11.57□□□□□ -0.56
CLIP1-208ENST00000537004 GRB7Q14451 532 aa11.57□□□□□ -0.56
CLIP1-208ENST00000537004 GTF2H2CQ6P1K8 395 aa11.57□□□□□ -0.56
CLIP1-208ENST00000537004 GOLGA7Q7Z5G4 137 aa11.57□□□□□ -0.56
CLIP1-208ENST00000537004 NLRP8Q86W28 1048 aa11.57□□□□□ -0.56
CLIP1-208ENST00000537004 HPS6Q86YV9 775 aa11.57□□□□□ -0.56
CLIP1-208ENST00000537004 EFCAB3Q8N7B9 438 aa11.57□□□□□ -0.56
CLIP1-208ENST00000537004 DCBLD1Q8N8Z6 715 aa11.57□□□□□ -0.56
CLIP1-208ENST00000537004 SNX31Q8N9S9 440 aa11.57□□□□□ -0.56
CLIP1-208ENST00000537004 GPR156Q8NFN8 814 aa11.57□□□□□ -0.56
CLIP1-208ENST00000537004 GPBAR1Q8TDU6 330 aa11.57□□□□□ -0.56
CLIP1-208ENST00000537004 CCDC74AQ96AQ1 378 aa11.57□□□□□ -0.56
CLIP1-208ENST00000537004 DCUN1D1Q96GG9 259 aa11.57□□□□□ -0.56
CLIP1-208ENST00000537004 NPAS2Q99743 824 aa11.57□□□□□ -0.56
CLIP1-208ENST00000537004 EGFL8Q99944 293 aa11.57□□□□□ -0.56
CLIP1-208ENST00000537004 MRPL1Q9BYD6 325 aaKnown RBP11.57□□□□□ -0.56
CLIP1-208ENST00000537004 CCDC86Q9H6F5 360 aaKnown RBP11.57□□□□□ -0.56
CLIP1-208ENST00000537004 NOL11Q9H8H0 719 aaKnown RBP11.57□□□□□ -0.56
CLIP1-208ENST00000537004 WDR41Q9HAD4 459 aa11.57□□□□□ -0.56
CLIP1-208ENST00000537004 RAD18Q9NS91 495 aa11.57□□□□□ -0.56
CLIP1-208ENST00000537004 TAAR2Q9P1P5 351 aa11.57□□□□□ -0.56
CLIP1-208ENST00000537004 NFKBIL1Q9UBC1 381 aaPredicted RBP11.57□□□□□ -0.56
CLIP1-208ENST00000537004 ZNHIT2Q9UHR6 403 aa11.57□□□□□ -0.56
CLIP1-208ENST00000537004 PRPF19Q9UMS4 504 aaKnown RBP11.57□□□□□ -0.56
CLIP1-208ENST00000537004 TAPBPO15533 448 aa11.56□□□□□ -0.56
CLIP1-208ENST00000537004 LRP4O75096 1905 aa11.56□□□□□ -0.56
CLIP1-208ENST00000537004 ENO3P13929 434 aaPredicted RBP11.56□□□□□ -0.56
CLIP1-208ENST00000537004 HGFP14210 728 aa11.56□□□□□ -0.56
CLIP1-208ENST00000537004 LBPP18428 481 aa11.56□□□□□ -0.56
CLIP1-208ENST00000537004 ARL1P40616 181 aaPredicted RBP11.56□□□□□ -0.56
CLIP1-208ENST00000537004 HSPA7P48741 367 aa11.56□□□□□ -0.56
CLIP1-208ENST00000537004 RPIAP49247 311 aa11.56□□□□□ -0.56
CLIP1-208ENST00000537004 ERFP50548 548 aa11.56□□□□□ -0.56
CLIP1-208ENST00000537004 MAZP56270 477 aaKnown RBP11.56□□□□□ -0.56
CLIP1-208ENST00000537004 ILF3Q12906 894 aaKnown RBP eCLIP11.56□□□□□ -0.56
CLIP1-208ENST00000537004 STX5Q13190 355 aa11.56□□□□□ -0.56
CLIP1-208ENST00000537004 PYCR3Q53H96 274 aa11.56□□□□□ -0.56
CLIP1-208ENST00000537004 TCHHL1Q5QJ38 904 aaPredicted RBP11.56□□□□□ -0.56
CLIP1-208ENST00000537004 CDCP2Q5VXM1 449 aa11.56□□□□□ -0.56
CLIP1-208ENST00000537004 LETMD1Q6P1Q0 360 aa11.56□□□□□ -0.56
CLIP1-208ENST00000537004 BNC2Q6ZN30 1099 aaPredicted RBP11.56□□□□□ -0.56
CLIP1-208ENST00000537004 MYLK4Q86YV6 388 aaPredicted RBP11.56□□□□□ -0.56
CLIP1-208ENST00000537004 PGAM4Q8N0Y7 254 aa11.56□□□□□ -0.56
CLIP1-208ENST00000537004 SDR16C5Q8N3Y7 309 aa11.56□□□□□ -0.56
Retrieved 100 of 20,778 RNA–protein pairs in 28.5 ms