RNA–Protein interactions for RNA: ENST00000520755.5

LSM1-203, Transcript of LSM1 homolog, mRNA degradation associated, humanhuman

TSL 1 (best) BASIC

Gene LSM1, Length 975 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LSM1-203ENST00000520755 C3orf38Q5JPI3 329 aa14.75□□□□□ -0.05
LSM1-203ENST00000520755 PRAMEF9Q5VWM5 478 aa14.75□□□□□ -0.05
LSM1-203ENST00000520755 PRAMEF13Q5VWM6 474 aa14.75□□□□□ -0.05
LSM1-203ENST00000520755 SPESP1Q6UW49 350 aa14.75□□□□□ -0.05
LSM1-203ENST00000520755 FRMD7Q6ZUT3 714 aa14.75□□□□□ -0.05
LSM1-203ENST00000520755 RAB11FIP2Q7L804 512 aa14.75□□□□□ -0.05
LSM1-203ENST00000520755 PRSS42Q7Z5A4 293 aa14.75□□□□□ -0.05
LSM1-203ENST00000520755 GOLGA7Q7Z5G4 137 aa14.75□□□□□ -0.05
LSM1-203ENST00000520755 ARHGAP22Q7Z5H3 698 aa14.75□□□□□ -0.05
LSM1-203ENST00000520755 TRIM73Q86UV7 250 aa14.75□□□□□ -0.05
LSM1-203ENST00000520755 THOC6Q86W42 341 aaKnown RBP14.75□□□□□ -0.05
LSM1-203ENST00000520755 NUDCD3Q8IVD9 361 aa14.75□□□□□ -0.05
LSM1-203ENST00000520755 FAM20CQ8IXL6 584 aa14.75□□□□□ -0.05
LSM1-203ENST00000520755 OR2A1Q8NGT9 310 aa14.75□□□□□ -0.05
LSM1-203ENST00000520755 GRAMD1AQ96CP6 724 aa14.75□□□□□ -0.05
LSM1-203ENST00000520755 OR2A14Q96R47 310 aa14.75□□□□□ -0.05
LSM1-203ENST00000520755 INTS9Q9NV88 658 aaKnown RBP14.75□□□□□ -0.05
LSM1-203ENST00000520755 AKAP7Q9P0M2 348 aaPredicted RBP14.75□□□□□ -0.05
LSM1-203ENST00000520755 TAC3Q9UHF0 121 aa14.75□□□□□ -0.05
LSM1-203ENST00000520755 SLC22A14Q9Y267 594 aa14.75□□□□□ -0.05
LSM1-203ENST00000520755 CCDC187A0A096LP49 1063 aa14.74□□□□□ -0.05
LSM1-203ENST00000520755 IGHV5-51A0A0C4DH38 117 aa14.74□□□□□ -0.05
LSM1-203ENST00000520755 K7EPI3 171 aa14.74□□□□□ -0.05
LSM1-203ENST00000520755 PPP6CO00743 305 aa14.74□□□□□ -0.05
LSM1-203ENST00000520755 OR7A17O14581 309 aa14.74□□□□□ -0.05
LSM1-203ENST00000520755 HGFP14210 728 aa14.74□□□□□ -0.05
LSM1-203ENST00000520755 PVRP15151 417 aa14.74□□□□□ -0.05
LSM1-203ENST00000520755 TSPAN8P19075 237 aa14.74□□□□□ -0.05
LSM1-203ENST00000520755 CSTF2P33240 577 aaKnown RBP eCLIP14.74□□□□□ -0.05
LSM1-203ENST00000520755 LSSP48449 732 aa14.74□□□□□ -0.05
LSM1-203ENST00000520755 CDH13P55290 713 aa14.74□□□□□ -0.05
LSM1-203ENST00000520755 PDK4Q16654 411 aa14.74□□□□□ -0.05
LSM1-203ENST00000520755 CAPN13Q6MZZ7 669 aaPredicted RBP14.74□□□□□ -0.05
LSM1-203ENST00000520755 METTL2BQ6P1Q9 378 aaKnown RBP14.74□□□□□ -0.05
LSM1-203ENST00000520755 LCTLQ6UWM7 567 aa14.74□□□□□ -0.05
LSM1-203ENST00000520755 LSMEM2Q8N112 164 aa14.74□□□□□ -0.05
LSM1-203ENST00000520755 ARFGAP2Q8N6H7 521 aa14.74□□□□□ -0.05
LSM1-203ENST00000520755 SLC22A18Q96BI1 424 aa14.74□□□□□ -0.05
LSM1-203ENST00000520755 LIN37Q96GY3 246 aaPredicted RBP14.74□□□□□ -0.05
LSM1-203ENST00000520755 CMKLR1Q99788 373 aa14.74□□□□□ -0.05
LSM1-203ENST00000520755 ACAT2Q9BWD1 397 aa14.74□□□□□ -0.05
LSM1-203ENST00000520755 KLHL25Q9H0H3 589 aa14.74□□□□□ -0.05
LSM1-203ENST00000520755 ZNF768Q9H5H4 540 aaKnown RBP14.74□□□□□ -0.05
LSM1-203ENST00000520755 SLC6A20Q9NP91 592 aa14.74□□□□□ -0.05
LSM1-203ENST00000520755 DNAJC11Q9NVH1 559 aa14.74□□□□□ -0.05
LSM1-203ENST00000520755 OPTCQ9UBM4 332 aa14.74□□□□□ -0.05
LSM1-203ENST00000520755 SATB2Q9UPW6 733 aa14.74□□□□□ -0.05
LSM1-203ENST00000520755 LOXL2Q9Y4K0 774 aa14.74□□□□□ -0.05
LSM1-203ENST00000520755 NEUROG3Q9Y4Z2 214 aa14.74□□□□□ -0.05
LSM1-203ENST00000520755 TNPO3Q9Y5L0 923 aaKnown RBP14.74□□□□□ -0.05
LSM1-203ENST00000520755 IGKV1-8A0A0C4DH67 115 aa14.73□□□□□ -0.05
LSM1-203ENST00000520755 PMS2P1A4D2B8 440 aa14.73□□□□□ -0.05
LSM1-203ENST00000520755 SLC9B1P1A6NJY1 282 aa14.73□□□□□ -0.05
LSM1-203ENST00000520755 E7EQ34 232 aa14.73□□□□□ -0.05
LSM1-203ENST00000520755 UBFD1O14562 309 aaKnown RBP14.73□□□□□ -0.05
LSM1-203ENST00000520755 HGSO14964 777 aaPredicted RBP14.73□□□□□ -0.05
LSM1-203ENST00000520755 TOX3O15405 576 aaPredicted RBP14.73□□□□□ -0.05
LSM1-203ENST00000520755 NRP2O60462 931 aa14.73□□□□□ -0.05
LSM1-203ENST00000520755 SUPT7LO94864 414 aa14.73□□□□□ -0.05
LSM1-203ENST00000520755 SERPINE1P05121 402 aa14.73□□□□□ -0.05
LSM1-203ENST00000520755 ANKRD34CP0C6C1 535 aa14.73□□□□□ -0.05
LSM1-203ENST00000520755 NPPBP16860 134 aa14.73□□□□□ -0.05
LSM1-203ENST00000520755 CCND1P24385 295 aa14.73□□□□□ -0.05
LSM1-203ENST00000520755 ARL4DP49703 201 aa14.73□□□□□ -0.05
LSM1-203ENST00000520755 GYS2P54840 703 aa14.73□□□□□ -0.05
LSM1-203ENST00000520755 GUCY1A3Q02108 690 aa14.73□□□□□ -0.05
LSM1-203ENST00000520755 CDC16Q13042 620 aa14.73□□□□□ -0.05
LSM1-203ENST00000520755 TRAF3Q13114 568 aa14.73□□□□□ -0.05
LSM1-203ENST00000520755 GTF2H2Q13888 395 aa14.73□□□□□ -0.05
LSM1-203ENST00000520755 SF1Q15637 639 aaKnown RBP14.73□□□□□ -0.05
LSM1-203ENST00000520755 THEMIS2Q5TEJ8 643 aa14.73□□□□□ -0.05
LSM1-203ENST00000520755 ICE2Q659A1 982 aa14.73□□□□□ -0.05
LSM1-203ENST00000520755 GTF2H2CQ6P1K8 395 aa14.73□□□□□ -0.05
LSM1-203ENST00000520755 FAM129CQ86XR2 697 aa14.73□□□□□ -0.05
LSM1-203ENST00000520755 TEX9Q8N6V9 391 aa14.73□□□□□ -0.05
LSM1-203ENST00000520755 CCNYL1Q8N7R7 359 aa14.73□□□□□ -0.05
LSM1-203ENST00000520755 AGBL5Q8NDL9 886 aa14.73□□□□□ -0.05
LSM1-203ENST00000520755 OR52B6Q8NGF0 335 aa14.73□□□□□ -0.05
LSM1-203ENST00000520755 WDR36Q8NI36 951 aaKnown RBP14.73□□□□□ -0.05
LSM1-203ENST00000520755 CKAP2Q8WWK9 683 aa14.73□□□□□ -0.05
LSM1-203ENST00000520755 NEIL2Q969S2 332 aa14.73□□□□□ -0.05
LSM1-203ENST00000520755 PRR11Q96HE9 360 aaPredicted RBP14.73□□□□□ -0.05
LSM1-203ENST00000520755 C20orf27Q9GZN8 174 aa14.73□□□□□ -0.05
LSM1-203ENST00000520755 ZNF395Q9H8N7 513 aaPredicted RBP14.73□□□□□ -0.05
LSM1-203ENST00000520755 TNFRSF12AQ9NP84 129 aa14.73□□□□□ -0.05
LSM1-203ENST00000520755 C1GALT1Q9NS00 363 aa14.73□□□□□ -0.05
LSM1-203ENST00000520755 CUEDC1Q9NWM3 386 aaPredicted RBP14.73□□□□□ -0.05
LSM1-203ENST00000520755 SOHLH2Q9NX45 425 aa14.73□□□□□ -0.05
LSM1-203ENST00000520755 ZNF225Q9UK10 706 aa14.73□□□□□ -0.05
LSM1-203ENST00000520755 ANGPTL2Q9UKU9 493 aa14.73□□□□□ -0.05
LSM1-203ENST00000520755 KNTC1P50748 2209 aa14.72□□□□□ -0.05
LSM1-203ENST00000520755 A0A0J9YY10 115 aa14.72□□□□□ -0.05
LSM1-203ENST00000520755 A0A1W2PNU3 283 aaPredicted RBP14.72□□□□□ -0.05
LSM1-203ENST00000520755 EFCAB7A8K855 629 aa14.72□□□□□ -0.05
LSM1-203ENST00000520755 ITM2AO43736 263 aa14.72□□□□□ -0.05
LSM1-203ENST00000520755 NPHS1O60500 1241 aa14.72□□□□□ -0.05
LSM1-203ENST00000520755 LYPLA1O75608 230 aaPredicted RBP14.72□□□□□ -0.05
LSM1-203ENST00000520755 ZBTB11O95625 1053 aaPredicted RBP14.72□□□□□ -0.05
LSM1-203ENST00000520755 CHRNGP07510 517 aa14.72□□□□□ -0.05
LSM1-203ENST00000520755 JMJD7P0C870 316 aa14.72□□□□□ -0.05
Retrieved 100 of 20,778 RNA–protein pairs in 25.4 ms