RNA–Protein interactions for RNA: ENST00000509638.5

LIMCH1-211, Transcript of LIM and calponin homology domains 1, humanhuman

TSL 1 (best) BASIC

Gene LIMCH1, Length 1,570 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-211ENST00000509638 AKAP7Q9P0M2 348 aaPredicted RBP28.47■■■□□ 2.15
LIMCH1-211ENST00000509638 COPG2Q9UBF2 871 aa28.47■■■□□ 2.15
LIMCH1-211ENST00000509638 LOXL2Q9Y4K0 774 aa28.47■■■□□ 2.15
LIMCH1-211ENST00000509638 KLK4Q9Y5K2 254 aa28.47■■■□□ 2.15
LIMCH1-211ENST00000509638 KCNE2Q9Y6J6 123 aa28.47■■■□□ 2.15
LIMCH1-211ENST00000509638 AKAP13Q12802 2813 aa28.47■■■□□ 2.15
LIMCH1-211ENST00000509638 CCDC187A0A096LP49 1063 aa28.46■■■□□ 2.15
LIMCH1-211ENST00000509638 PRPF4O43172 522 aaKnown RBP eCLIP28.46■■■□□ 2.15
LIMCH1-211ENST00000509638 FCRL6Q6DN72 434 aa28.46■■■□□ 2.15
LIMCH1-211ENST00000509638 FIGLAQ6QHK4 219 aa28.46■■■□□ 2.15
LIMCH1-211ENST00000509638 ADCK2Q7Z695 626 aa28.46■■■□□ 2.15
LIMCH1-211ENST00000509638 SLC5A11Q8WWX8 675 aa28.46■■■□□ 2.15
LIMCH1-211ENST00000509638 PKNOX2Q96KN3 472 aa28.46■■■□□ 2.15
LIMCH1-211ENST00000509638 PDE7BQ9NP56 450 aa28.46■■■□□ 2.15
LIMCH1-211ENST00000509638 KCNK9Q9NPC2 374 aa28.46■■■□□ 2.15
LIMCH1-211ENST00000509638 MDC1Q14676 2089 aaKnown RBP28.46■■■□□ 2.15
LIMCH1-211ENST00000509638 E7EQ34 232 aa28.45■■■□□ 2.15
LIMCH1-211ENST00000509638 DYNC1I1O14576 645 aa28.45■■■□□ 2.15
LIMCH1-211ENST00000509638 EBLN1P0CF75 366 aa28.45■■■□□ 2.15
LIMCH1-211ENST00000509638 CPA3P15088 417 aa28.45■■■□□ 2.15
LIMCH1-211ENST00000509638 SH3BP2P78314 561 aa28.45■■■□□ 2.15
LIMCH1-211ENST00000509638 PCLAFQ15004 111 aa28.45■■■□□ 2.15
LIMCH1-211ENST00000509638 RAB11FIP2Q7L804 512 aa28.45■■■□□ 2.15
LIMCH1-211ENST00000509638 TMPRSS11BQ86T26 416 aa28.45■■■□□ 2.15
LIMCH1-211ENST00000509638 SLC22A9Q8IVM8 553 aa28.45■■■□□ 2.15
LIMCH1-211ENST00000509638 D2HGDHQ8N465 521 aa28.45■■■□□ 2.15
LIMCH1-211ENST00000509638 TCTN2Q96GX1 697 aa28.45■■■□□ 2.15
LIMCH1-211ENST00000509638 TMEM237Q96Q45 408 aa28.45■■■□□ 2.15
LIMCH1-211ENST00000509638 FAM60AQ9NP50 221 aa28.45■■■□□ 2.15
LIMCH1-211ENST00000509638 SIDT1Q9NXL6 827 aaKnown RBP28.45■■■□□ 2.15
LIMCH1-211ENST00000509638 H7BY64 318 aa28.45■■■□□ 2.14
LIMCH1-211ENST00000509638 E2F3O00716 465 aa28.45■■■□□ 2.14
LIMCH1-211ENST00000509638 MAP3K7O43318 606 aa28.45■■■□□ 2.14
LIMCH1-211ENST00000509638 RPS17P08708 135 aaKnown RBP28.45■■■□□ 2.14
LIMCH1-211ENST00000509638 HGFP14210 728 aa28.45■■■□□ 2.14
LIMCH1-211ENST00000509638 HERVK_113P63132 956 aa28.45■■■□□ 2.14
LIMCH1-211ENST00000509638 C3orf38Q5JPI3 329 aa28.45■■■□□ 2.14
LIMCH1-211ENST00000509638 ZNF425Q6IV72 752 aa28.45■■■□□ 2.14
LIMCH1-211ENST00000509638 TEX9Q8N6V9 391 aa28.45■■■□□ 2.14
LIMCH1-211ENST00000509638 CCDC126Q96EE4 140 aa28.45■■■□□ 2.14
LIMCH1-211ENST00000509638 PRAP1Q96NZ9 151 aa28.45■■■□□ 2.14
LIMCH1-211ENST00000509638 PLCD4Q9BRC7 762 aa28.45■■■□□ 2.14
LIMCH1-211ENST00000509638 ERVK-6Q9BXR3 956 aa28.45■■■□□ 2.14
LIMCH1-211ENST00000509638 ANKMY1Q9P2S6 941 aa28.45■■■□□ 2.14
LIMCH1-211ENST00000509638 PCTPQ9UKL6 214 aa28.45■■■□□ 2.14
LIMCH1-211ENST00000509638 KLK13Q9UKR3 277 aa28.45■■■□□ 2.14
LIMCH1-211ENST00000509638 ANGPTL3Q9Y5C1 460 aa28.45■■■□□ 2.14
LIMCH1-211ENST00000509638 A0A1W2PNU3 283 aaPredicted RBP28.44■■■□□ 2.14
LIMCH1-211ENST00000509638 PMS2P1A4D2B8 440 aa28.44■■■□□ 2.14
LIMCH1-211ENST00000509638 OR2A25A4D2G3 310 aa28.44■■■□□ 2.14
LIMCH1-211ENST00000509638 EFCAB7A8K855 629 aa28.44■■■□□ 2.14
LIMCH1-211ENST00000509638 GNAZP19086 355 aa28.44■■■□□ 2.14
LIMCH1-211ENST00000509638 PRKAA2P54646 552 aa28.44■■■□□ 2.14
LIMCH1-211ENST00000509638 EIF3IQ13347 325 aaKnown RBP28.44■■■□□ 2.14
LIMCH1-211ENST00000509638 DEFB110Q30KQ9 67 aa28.44■■■□□ 2.14
LIMCH1-211ENST00000509638 METTL2BQ6P1Q9 378 aaKnown RBP28.44■■■□□ 2.14
LIMCH1-211ENST00000509638 PAQR7Q86WK9 346 aa28.44■■■□□ 2.14
LIMCH1-211ENST00000509638 ZUFSPQ96AP4 578 aa28.44■■■□□ 2.14
LIMCH1-211ENST00000509638 OCIAD1Q9NX40 245 aa28.44■■■□□ 2.14
LIMCH1-211ENST00000509638 GPRC5BQ9NZH0 403 aa28.44■■■□□ 2.14
LIMCH1-211ENST00000509638 SNX7Q9UNH6 387 aa28.44■■■□□ 2.14
LIMCH1-211ENST00000509638 SATB2Q9UPW6 733 aa28.44■■■□□ 2.14
LIMCH1-211ENST00000509638 TMEM120BA0PK00 339 aa28.43■■■□□ 2.14
LIMCH1-211ENST00000509638 TM9SF1O15321 606 aa28.43■■■□□ 2.14
LIMCH1-211ENST00000509638 ZWINTO95229 277 aa28.43■■■□□ 2.14
LIMCH1-211ENST00000509638 EPB42P16452 691 aa28.43■■■□□ 2.14
LIMCH1-211ENST00000509638 EPORP19235 508 aa28.43■■■□□ 2.14
LIMCH1-211ENST00000509638 ETV4P43268 484 aa28.43■■■□□ 2.14
LIMCH1-211ENST00000509638 MPP2Q14168 576 aa28.43■■■□□ 2.14
LIMCH1-211ENST00000509638 CATSPEREQ5SY80 951 aa28.43■■■□□ 2.14
LIMCH1-211ENST00000509638 TMTC4Q5T4D3 741 aa28.43■■■□□ 2.14
LIMCH1-211ENST00000509638 GOLGA7Q7Z5G4 137 aa28.43■■■□□ 2.14
LIMCH1-211ENST00000509638 ABHD11Q8NFV4 315 aa28.43■■■□□ 2.14
LIMCH1-211ENST00000509638 CHRNA10Q9GZZ6 450 aa28.43■■■□□ 2.14
LIMCH1-211ENST00000509638 ACSS2Q9NR19 701 aa28.43■■■□□ 2.14
LIMCH1-211ENST00000509638 WASF3Q9UPY6 502 aa28.43■■■□□ 2.14
LIMCH1-211ENST00000509638 NCOR2Q9Y618 2525 aa28.43■■■□□ 2.14
LIMCH1-211ENST00000509638 ASPMQ8IZT6 3477 aa28.42■■■□□ 2.14
LIMCH1-211ENST00000509638 PLD2O14939 933 aa28.42■■■□□ 2.14
LIMCH1-211ENST00000509638 CTSVO60911 334 aa28.42■■■□□ 2.14
LIMCH1-211ENST00000509638 CCL4P13236 92 aa28.42■■■□□ 2.14
LIMCH1-211ENST00000509638 FOLR1P15328 257 aa28.42■■■□□ 2.14
LIMCH1-211ENST00000509638 SPINK2P20155 84 aa28.42■■■□□ 2.14
LIMCH1-211ENST00000509638 HRH2P25021 359 aa28.42■■■□□ 2.14
LIMCH1-211ENST00000509638 PIK3CGP48736 1102 aa28.42■■■□□ 2.14
LIMCH1-211ENST00000509638 CCR8P51685 355 aa28.42■■■□□ 2.14
LIMCH1-211ENST00000509638 GTF2H2Q13888 395 aa28.42■■■□□ 2.14
LIMCH1-211ENST00000509638 GTF2H2CQ6P1K8 395 aa28.42■■■□□ 2.14
LIMCH1-211ENST00000509638 FOXR1Q6PIV2 292 aa28.42■■■□□ 2.14
LIMCH1-211ENST00000509638 RPS27LQ71UM5 84 aaKnown RBP28.42■■■□□ 2.14
LIMCH1-211ENST00000509638 WDR36Q8NI36 951 aaKnown RBP28.42■■■□□ 2.14
LIMCH1-211ENST00000509638 NSUN5Q96P11 429 aaKnown RBP28.42■■■□□ 2.14
LIMCH1-211ENST00000509638 C1QTNF3Q9BXJ4 246 aa28.42■■■□□ 2.14
LIMCH1-211ENST00000509638 HMGB1P1B2RPK0 211 aaPredicted RBP28.41■■■□□ 2.14
LIMCH1-211ENST00000509638 HAT1O14929 419 aa28.41■■■□□ 2.14
LIMCH1-211ENST00000509638 ITIH1P19827 911 aa28.41■■■□□ 2.14
LIMCH1-211ENST00000509638 CSNK1G2P78368 415 aa28.41■■■□□ 2.14
LIMCH1-211ENST00000509638 TUBB3Q13509 450 aa28.41■■■□□ 2.14
LIMCH1-211ENST00000509638 GPR19Q15760 415 aa28.41■■■□□ 2.14
LIMCH1-211ENST00000509638 ZNF678Q5SXM1 525 aa28.41■■■□□ 2.14
Retrieved 100 of 20,778 RNA–protein pairs in 57.3 ms