RNA–Protein interactions for RNA: ENST00000508604.5

NUP54-208, Transcript of nucleoporin 54, humanhuman

TSL 2

Gene NUP54, Length 1,671 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP54-208ENST00000508604 PPIL3Q9H2H8 161 aaKnown RBP2.01□□□□□ -2.09
NUP54-208ENST00000508604 HRH4Q9H3N8 390 aa2.01□□□□□ -2.09
NUP54-208ENST00000508604 NLGN3Q9NZ94 848 aa2.01□□□□□ -2.09
NUP54-208ENST00000508604 A0A1W2PR77 199 aa2□□□□□ -2.09
NUP54-208ENST00000508604 FRMD3A2A2Y4 597 aa2□□□□□ -2.09
NUP54-208ENST00000508604 ANKUB1A6NFN9 424 aa2□□□□□ -2.09
NUP54-208ENST00000508604 G3V2L1 256 aa2□□□□□ -2.09
NUP54-208ENST00000508604 O00370 1275 aa2□□□□□ -2.09
NUP54-208ENST00000508604 FPGTO14772 594 aa2□□□□□ -2.09
NUP54-208ENST00000508604 MITFO75030 526 aaPredicted RBP2□□□□□ -2.09
NUP54-208ENST00000508604 NXPH4O95158 308 aa2□□□□□ -2.09
NUP54-208ENST00000508604 CDH8P55286 799 aa2□□□□□ -2.09
NUP54-208ENST00000508604 TRIM29Q14134 588 aa2□□□□□ -2.09
NUP54-208ENST00000508604 TSTQ16762 297 aaKnown RBP2□□□□□ -2.09
NUP54-208ENST00000508604 TTC31Q49AM3 519 aaPredicted RBP2□□□□□ -2.09
NUP54-208ENST00000508604 CLEC17AQ6ZS10 378 aa2□□□□□ -2.09
NUP54-208ENST00000508604 LDB1Q86U70 411 aaPredicted RBP2□□□□□ -2.09
NUP54-208ENST00000508604 LGI2Q8N0V4 545 aa2□□□□□ -2.09
NUP54-208ENST00000508604 CNPY4Q8N129 248 aa2□□□□□ -2.09
NUP54-208ENST00000508604 RFFLQ8WZ73 363 aa2□□□□□ -2.09
NUP54-208ENST00000508604 STAU2Q9NUL3 570 aaKnown RBP eCLIP2□□□□□ -2.09
NUP54-208ENST00000508604 PDP2Q9P2J9 529 aa2□□□□□ -2.09
NUP54-208ENST00000508604 FRMD4AQ9P2Q2 1039 aaPredicted RBP2□□□□□ -2.09
NUP54-208ENST00000508604 ZNF644Q9H582 1327 aaPredicted RBP2□□□□□ -2.09
NUP54-208ENST00000508604 ARPC2O15144 300 aa1.99□□□□□ -2.09
NUP54-208ENST00000508604 TMEM63AO94886 807 aa1.99□□□□□ -2.09
NUP54-208ENST00000508604 FAM200BP0CF97 657 aa1.99□□□□□ -2.09
NUP54-208ENST00000508604 GABRB1P18505 474 aa1.99□□□□□ -2.09
NUP54-208ENST00000508604 PAX3P23760 479 aa1.99□□□□□ -2.09
NUP54-208ENST00000508604 ARL3P36405 182 aa1.99□□□□□ -2.09
NUP54-208ENST00000508604 ELK3P41970 407 aa1.99□□□□□ -2.09
NUP54-208ENST00000508604 ZRSR2Q15696 482 aaKnown RBP1.99□□□□□ -2.09
NUP54-208ENST00000508604 EXT1Q16394 746 aa1.99□□□□□ -2.09
NUP54-208ENST00000508604 CA9Q16790 459 aa1.99□□□□□ -2.09
NUP54-208ENST00000508604 MARC1Q5VT66 337 aa1.99□□□□□ -2.09
NUP54-208ENST00000508604 CPXCR1Q8N123 301 aa1.99□□□□□ -2.09
NUP54-208ENST00000508604 FBXO39Q8N4B4 442 aa1.99□□□□□ -2.09
NUP54-208ENST00000508604 ANP32BQ92688 251 aaKnown RBP1.99□□□□□ -2.09
NUP54-208ENST00000508604 SECISBP2LQ93073 1101 aaKnown RBP1.99□□□□□ -2.09
NUP54-208ENST00000508604 ZNF622Q969S3 477 aaKnown RBP eCLIP1.99□□□□□ -2.09
NUP54-208ENST00000508604 FAM20AQ96MK3 541 aa1.99□□□□□ -2.09
NUP54-208ENST00000508604 FAM218AQ96MZ4 157 aa1.99□□□□□ -2.09
NUP54-208ENST00000508604 ZNF285Q96NJ3 590 aa1.99□□□□□ -2.09
NUP54-208ENST00000508604 SRSF8Q9BRL6 282 aaKnown RBP1.99□□□□□ -2.09
NUP54-208ENST00000508604 OCR1Q9BZK8 76 aa1.99□□□□□ -2.09
NUP54-208ENST00000508604 MUC13Q9H3R2 512 aa1.99□□□□□ -2.09
NUP54-208ENST00000508604 CLEC5AQ9NY25 188 aa1.99□□□□□ -2.09
NUP54-208ENST00000508604 DPP3Q9NY33 737 aa1.99□□□□□ -2.09
NUP54-208ENST00000508604 C9orf78Q9NZ63 289 aaPredicted RBP1.99□□□□□ -2.09
NUP54-208ENST00000508604 OR10H2O60403 315 aa1.99□□□□□ -2.09
NUP54-208ENST00000508604 CREG1O75629 220 aa1.99□□□□□ -2.09
NUP54-208ENST00000508604 ZWINTO95229 277 aa1.99□□□□□ -2.09
NUP54-208ENST00000508604 AADACP22760 399 aa1.99□□□□□ -2.09
NUP54-208ENST00000508604 PKLRP30613 574 aa1.99□□□□□ -2.09
NUP54-208ENST00000508604 RIDAP52758 137 aaKnown RBP1.99□□□□□ -2.09
NUP54-208ENST00000508604 NDST2P52849 883 aa1.99□□□□□ -2.09
NUP54-208ENST00000508604 NDUFV3P56181 108 aaKnown RBP1.99□□□□□ -2.09
NUP54-208ENST00000508604 KIAA0141Q14154 515 aaPredicted RBP1.99□□□□□ -2.09
NUP54-208ENST00000508604 SYT14P1Q58G82 188 aa1.99□□□□□ -2.09
NUP54-208ENST00000508604 DHRS7BQ6IAN0 325 aaPredicted RBP1.99□□□□□ -2.09
NUP54-208ENST00000508604 TMTC3Q6ZXV5 915 aa1.99□□□□□ -2.09
NUP54-208ENST00000508604 CHST9Q7L1S5 443 aa1.99□□□□□ -2.09
NUP54-208ENST00000508604 ADGRD2Q7Z7M1 963 aa1.99□□□□□ -2.09
NUP54-208ENST00000508604 TMEM173Q86WV6 379 aaPredicted RBP1.99□□□□□ -2.09
NUP54-208ENST00000508604 NDUFAF2Q8N183 169 aa1.99□□□□□ -2.09
NUP54-208ENST00000508604 CCDC185Q8N715 623 aa1.99□□□□□ -2.09
NUP54-208ENST00000508604 ZDHHC19Q8WVZ1 309 aaPredicted RBP1.99□□□□□ -2.09
NUP54-208ENST00000508604 LRRC59Q96AG4 307 aaKnown RBP1.99□□□□□ -2.09
NUP54-208ENST00000508604 HNRNPABQ99729 332 aaKnown RBP1.99□□□□□ -2.09
NUP54-208ENST00000508604 TBC1D17Q9HA65 648 aa1.99□□□□□ -2.09
NUP54-208ENST00000508604 ZNF148Q9UQR1 794 aa1.99□□□□□ -2.09
NUP54-208ENST00000508604 CHKBQ9Y259 395 aa1.99□□□□□ -2.09
NUP54-208ENST00000508604 FANCIQ9NVI1 1328 aa1.98□□□□□ -2.09
NUP54-208ENST00000508604 MUC19Q7Z5P9 8384 aa1.98□□□□□ -2.09
NUP54-208ENST00000508604 IGHV3-38A0A0C4DH36 116 aa1.98□□□□□ -2.09
NUP54-208ENST00000508604 LNP1A1A4G5 178 aa1.98□□□□□ -2.09
NUP54-208ENST00000508604 SLC1A7O00341 560 aa1.98□□□□□ -2.09
NUP54-208ENST00000508604 MEIS2O14770 477 aa1.98□□□□□ -2.09
NUP54-208ENST00000508604 AGR2O95994 175 aa1.98□□□□□ -2.09
NUP54-208ENST00000508604 SUPT20HL2P0C7V6 817 aa1.98□□□□□ -2.09
NUP54-208ENST00000508604 SMIM18P0DKX4 95 aa1.98□□□□□ -2.09
NUP54-208ENST00000508604 MYOGP15173 224 aa1.98□□□□□ -2.09
NUP54-208ENST00000508604 LMO2P25791 158 aa1.98□□□□□ -2.09
NUP54-208ENST00000508604 PTPN3P26045 913 aa1.98□□□□□ -2.09
NUP54-208ENST00000508604 SUOXP51687 545 aa1.98□□□□□ -2.09
NUP54-208ENST00000508604 UGT3A2Q3SY77 523 aa1.98□□□□□ -2.09
NUP54-208ENST00000508604 UTF1Q5T230 341 aa1.98□□□□□ -2.09
NUP54-208ENST00000508604 SMAP1Q8IYB5 467 aaPredicted RBP1.98□□□□□ -2.09
NUP54-208ENST00000508604 IL17REQ8NFR9 667 aa1.98□□□□□ -2.09
NUP54-208ENST00000508604 SSC4DQ8WTU2 575 aa1.98□□□□□ -2.09
NUP54-208ENST00000508604 SCFD2Q8WU76 684 aa1.98□□□□□ -2.09
NUP54-208ENST00000508604 LRRCC1Q9C099 1032 aa1.98□□□□□ -2.09
NUP54-208ENST00000508604 PRDM4Q9UKN5 801 aa1.98□□□□□ -2.09
NUP54-208ENST00000508604 IGSF1Q8N6C5 1336 aa1.98□□□□□ -2.09
NUP54-208ENST00000508604 CENPJQ9HC77 1338 aaPredicted RBP1.98□□□□□ -2.09
NUP54-208ENST00000508604 CCDC180Q9P1Z9 1646 aa1.98□□□□□ -2.09
NUP54-208ENST00000508604 POGZQ7Z3K3 1410 aa1.98□□□□□ -2.09
NUP54-208ENST00000508604 A0A1B0GVC2 190 aa1.97□□□□□ -2.09
NUP54-208ENST00000508604 CDRT15L2A8MXV6 281 aa1.97□□□□□ -2.09
NUP54-208ENST00000508604 BAIAP3O94812 1187 aa1.97□□□□□ -2.09
Retrieved 100 of 20,778 RNA–protein pairs in 51 ms