RNA–Protein interactions for RNA: ENST00000508501.5

LIMCH1-208, Transcript of LIM and calponin homology domains 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene LIMCH1, Length 5,054 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-208ENST00000508501 KCTD9Q7L273 389 aa10.97□□□□□ -0.65
LIMCH1-208ENST00000508501 SNX29P2Q8IUI4 249 aa10.97□□□□□ -0.65
LIMCH1-208ENST00000508501 ZNF584Q8IVC4 421 aa10.97□□□□□ -0.65
LIMCH1-208ENST00000508501 OR7G1Q8NGA0 311 aa10.97□□□□□ -0.65
LIMCH1-208ENST00000508501 LILRB4Q8NHJ6 448 aa10.97□□□□□ -0.65
LIMCH1-208ENST00000508501 LGALS12Q96DT0 336 aa10.97□□□□□ -0.65
LIMCH1-208ENST00000508501 MED30Q96HR3 178 aa10.97□□□□□ -0.65
LIMCH1-208ENST00000508501 ZNF317Q96PQ6 595 aaPredicted RBP10.97□□□□□ -0.65
LIMCH1-208ENST00000508501 P2RX2Q9UBL9 471 aa10.97□□□□□ -0.65
LIMCH1-208ENST00000508501 ZNF225Q9UK10 706 aa10.97□□□□□ -0.65
LIMCH1-208ENST00000508501 ZNRF3Q9ULT6 936 aa10.97□□□□□ -0.65
LIMCH1-208ENST00000508501 LACTBL1A8MY62 500 aa10.97□□□□□ -0.65
LIMCH1-208ENST00000508501 CETPP11597 493 aa10.97□□□□□ -0.65
LIMCH1-208ENST00000508501 MMP8P22894 467 aa10.97□□□□□ -0.65
LIMCH1-208ENST00000508501 ARSFP54793 590 aa10.97□□□□□ -0.65
LIMCH1-208ENST00000508501 TAS2R50P59544 299 aa10.97□□□□□ -0.65
LIMCH1-208ENST00000508501 SEMA5AQ13591 1074 aa10.97□□□□□ -0.65
LIMCH1-208ENST00000508501 C10orf62Q5T681 223 aaPredicted RBP10.97□□□□□ -0.65
LIMCH1-208ENST00000508501 C1orf94Q6P1W5 598 aa10.97□□□□□ -0.65
LIMCH1-208ENST00000508501 CADM2Q8N3J6 435 aa10.97□□□□□ -0.65
LIMCH1-208ENST00000508501 ESX1Q8N693 406 aa10.97□□□□□ -0.65
LIMCH1-208ENST00000508501 BORCS7Q96B45 105 aa10.97□□□□□ -0.65
LIMCH1-208ENST00000508501 PKP2Q99959 881 aa10.97□□□□□ -0.65
LIMCH1-208ENST00000508501 FDXACB1Q9BRP7 624 aaPredicted RBP10.97□□□□□ -0.65
LIMCH1-208ENST00000508501 SLC5A7Q9GZV3 580 aa10.97□□□□□ -0.65
LIMCH1-208ENST00000508501 PXMP2Q9NR77 195 aa10.97□□□□□ -0.65
LIMCH1-208ENST00000508501 DERAQ9Y315 318 aa10.97□□□□□ -0.65
LIMCH1-208ENST00000508501 C20orf202A1L168 122 aa10.96□□□□□ -0.65
LIMCH1-208ENST00000508501 INPPL1O15357 1258 aa10.96□□□□□ -0.65
LIMCH1-208ENST00000508501 IL7RP16871 459 aa10.96□□□□□ -0.65
LIMCH1-208ENST00000508501 MARCKSL1P49006 195 aa10.96□□□□□ -0.65
LIMCH1-208ENST00000508501 TAGLNQ01995 201 aaKnown RBP10.96□□□□□ -0.65
LIMCH1-208ENST00000508501 MLLT1Q03111 559 aaPredicted RBP10.96□□□□□ -0.65
LIMCH1-208ENST00000508501 ZNF155Q12901 538 aaPredicted RBP10.96□□□□□ -0.65
LIMCH1-208ENST00000508501 SCGB2A2Q13296 93 aa10.96□□□□□ -0.65
LIMCH1-208ENST00000508501 PTPN20Q4JDL3 420 aa10.96□□□□□ -0.65
LIMCH1-208ENST00000508501 DCST2Q5T1A1 773 aa10.96□□□□□ -0.65
LIMCH1-208ENST00000508501 RAET1GQ6H3X3 334 aa10.96□□□□□ -0.65
LIMCH1-208ENST00000508501 ARHGAP11AQ6P4F7 1023 aa10.96□□□□□ -0.65
LIMCH1-208ENST00000508501 PAPD4Q6PIY7 484 aaKnown RBP10.96□□□□□ -0.65
LIMCH1-208ENST00000508501 PEX13Q92968 403 aa10.96□□□□□ -0.65
LIMCH1-208ENST00000508501 TXN2Q99757 166 aa10.96□□□□□ -0.65
LIMCH1-208ENST00000508501 ADAM2Q99965 735 aa10.96□□□□□ -0.65
LIMCH1-208ENST00000508501 PNO1Q9NRX1 252 aaKnown RBP10.96□□□□□ -0.65
LIMCH1-208ENST00000508501 OR6C65A6NJZ3 312 aa10.96□□□□□ -0.65
LIMCH1-208ENST00000508501 TNFRSF10BO14763 440 aa10.96□□□□□ -0.65
LIMCH1-208ENST00000508501 SBK2P0C263 348 aa10.96□□□□□ -0.65
LIMCH1-208ENST00000508501 ZNF169Q14929 603 aaPredicted RBP10.96□□□□□ -0.65
LIMCH1-208ENST00000508501 NTRK2Q16620 822 aa10.96□□□□□ -0.65
LIMCH1-208ENST00000508501 C6orf141Q5SZD1 244 aa10.96□□□□□ -0.65
LIMCH1-208ENST00000508501 NDUFAF5Q5TEU4 345 aa10.96□□□□□ -0.65
LIMCH1-208ENST00000508501 SLC22A25Q6T423 547 aa10.96□□□□□ -0.65
LIMCH1-208ENST00000508501 SIMC1Q8NDZ2 872 aa10.96□□□□□ -0.65
LIMCH1-208ENST00000508501 REPS2Q8NFH8 660 aa10.96□□□□□ -0.65
LIMCH1-208ENST00000508501 SLC22A17Q8WUG5 538 aa10.96□□□□□ -0.65
LIMCH1-208ENST00000508501 C7orf34Q96L11 122 aa10.96□□□□□ -0.65
LIMCH1-208ENST00000508501 DHRS1Q96LJ7 313 aa10.96□□□□□ -0.65
LIMCH1-208ENST00000508501 PELOQ9BRX2 385 aaKnown RBP10.96□□□□□ -0.65
LIMCH1-208ENST00000508501 RAB11FIP5Q9BXF6 653 aa10.96□□□□□ -0.65
LIMCH1-208ENST00000508501 PRRG4Q9BZD6 226 aa10.96□□□□□ -0.65
LIMCH1-208ENST00000508501 TMEM39BQ9GZU3 492 aa10.96□□□□□ -0.65
LIMCH1-208ENST00000508501 SOHLH2Q9NX45 425 aa10.96□□□□□ -0.65
LIMCH1-208ENST00000508501 GSKIPQ9P0R6 139 aa10.96□□□□□ -0.65
LIMCH1-208ENST00000508501 ATG4BQ9Y4P1 393 aa10.96□□□□□ -0.65
LIMCH1-208ENST00000508501 CSDE1O75534 798 aaKnown RBP10.96□□□□□ -0.66
LIMCH1-208ENST00000508501 OXSR1O95747 527 aaPredicted RBP10.96□□□□□ -0.66
LIMCH1-208ENST00000508501 MT-ND1P03886 318 aa10.96□□□□□ -0.66
LIMCH1-208ENST00000508501 FCER2P06734 321 aa10.96□□□□□ -0.66
LIMCH1-208ENST00000508501 ERCC1P07992 297 aaPredicted RBP10.96□□□□□ -0.66
LIMCH1-208ENST00000508501 HTR1AP08908 422 aa10.96□□□□□ -0.66
LIMCH1-208ENST00000508501 DDX6P26196 483 aaKnown RBP eCLIP10.96□□□□□ -0.66
LIMCH1-208ENST00000508501 RPIAP49247 311 aa10.96□□□□□ -0.66
LIMCH1-208ENST00000508501 TAS2R40P59535 323 aa10.96□□□□□ -0.66
LIMCH1-208ENST00000508501 TAS2R31P59538 309 aa10.96□□□□□ -0.66
LIMCH1-208ENST00000508501 NAE1Q13564 534 aa10.96□□□□□ -0.66
LIMCH1-208ENST00000508501 GAS6Q14393 721 aa10.96□□□□□ -0.66
LIMCH1-208ENST00000508501 ATP6AP1Q15904 470 aa10.96□□□□□ -0.66
LIMCH1-208ENST00000508501 RAVER1Q8IY67 606 aaKnown RBP10.96□□□□□ -0.66
LIMCH1-208ENST00000508501 OR56B2PQ8NGI1 322 aa10.96□□□□□ -0.66
LIMCH1-208ENST00000508501 CACNG6Q9BXT2 260 aa10.96□□□□□ -0.66
LIMCH1-208ENST00000508501 SLC25A51Q9H1U9 297 aa10.96□□□□□ -0.66
LIMCH1-208ENST00000508501 TMEM100Q9NV29 134 aa10.96□□□□□ -0.66
LIMCH1-208ENST00000508501 OXSMQ9NWU1 459 aa10.96□□□□□ -0.66
LIMCH1-208ENST00000508501 ZNF821O75541 412 aaPredicted RBP10.96□□□□□ -0.66
LIMCH1-208ENST00000508501 PSEN2P49810 448 aa10.96□□□□□ -0.66
LIMCH1-208ENST00000508501 GSK3BP49841 420 aa10.96□□□□□ -0.66
LIMCH1-208ENST00000508501 HNRNPA0Q13151 305 aaKnown RBP10.96□□□□□ -0.66
LIMCH1-208ENST00000508501 CHIT1Q13231 466 aa10.96□□□□□ -0.66
LIMCH1-208ENST00000508501 ZNF550Q7Z398 422 aa10.96□□□□□ -0.66
LIMCH1-208ENST00000508501 PHTF2Q8N3S3 785 aa10.96□□□□□ -0.66
LIMCH1-208ENST00000508501 FTMTQ8N4E7 242 aa10.96□□□□□ -0.66
LIMCH1-208ENST00000508501 SLC7A13Q8TCU3 470 aa10.96□□□□□ -0.66
LIMCH1-208ENST00000508501 ZNF675Q8TD23 568 aa10.96□□□□□ -0.66
LIMCH1-208ENST00000508501 UPF1Q92900 1129 aaKnown RBP eCLIP10.96□□□□□ -0.66
LIMCH1-208ENST00000508501 FAM120CQ9NX05 1096 aaKnown RBP10.96□□□□□ -0.66
LIMCH1-208ENST00000508501 TRAV6A0A075B6T7 132 aa10.95□□□□□ -0.66
LIMCH1-208ENST00000508501 A0A1W2PP18 115 aa10.95□□□□□ -0.66
LIMCH1-208ENST00000508501 ANKRD33BA6NCL7 494 aa10.95□□□□□ -0.66
LIMCH1-208ENST00000508501 OR2AG2A6NM03 316 aa10.95□□□□□ -0.66
LIMCH1-208ENST00000508501 PI15O43692 258 aa10.95□□□□□ -0.66
Retrieved 100 of 20,778 RNA–protein pairs in 43.7 ms