RNA–Protein interactions for RNA: ENST00000497106.5

USP54-215, Transcript of ubiquitin specific peptidase 54, humanhuman

TSL 2

Gene USP54, Length 4,773 nt, Biotype processed transcript, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP54-215ENST00000497106 VARSP26640 1264 aaKnown RBP8.1□□□□□ -1.11
USP54-215ENST00000497106 TRIM23P36406 574 aa8.1□□□□□ -1.11
USP54-215ENST00000497106 GMPRP36959 345 aa8.1□□□□□ -1.11
USP54-215ENST00000497106 PGGT1BP53609 377 aa8.1□□□□□ -1.11
USP54-215ENST00000497106 CYP51A1Q16850 503 aa8.1□□□□□ -1.11
USP54-215ENST00000497106 C1QTNF12Q5T7M4 302 aa8.1□□□□□ -1.11
USP54-215ENST00000497106 AMIGO1Q86WK6 493 aa8.1□□□□□ -1.11
USP54-215ENST00000497106 OR10G6Q8NH81 332 aa8.1□□□□□ -1.11
USP54-215ENST00000497106 LZICQ8WZA0 190 aa8.1□□□□□ -1.11
USP54-215ENST00000497106 MAGEL2Q9UJ55 1249 aa8.1□□□□□ -1.11
USP54-215ENST00000497106 PRKAB1Q9Y478 270 aa8.1□□□□□ -1.11
USP54-215ENST00000497106 SLC16A8O95907 504 aa8.1□□□□□ -1.11
USP54-215ENST00000497106 JUNDP17535 347 aa8.1□□□□□ -1.11
USP54-215ENST00000497106 CD38P28907 300 aa8.1□□□□□ -1.11
USP54-215ENST00000497106 HSPA13P48723 471 aa8.1□□□□□ -1.11
USP54-215ENST00000497106 DHPSP49366 369 aaPredicted RBP8.1□□□□□ -1.11
USP54-215ENST00000497106 TPD52P55327 224 aaPredicted RBP8.1□□□□□ -1.11
USP54-215ENST00000497106 SESN3P58005 492 aa8.1□□□□□ -1.11
USP54-215ENST00000497106 RPS15AP62244 130 aaKnown RBP8.1□□□□□ -1.11
USP54-215ENST00000497106 RACK1P63244 317 aaKnown RBP8.1□□□□□ -1.11
USP54-215ENST00000497106 SLC25A3Q00325 362 aa8.1□□□□□ -1.11
USP54-215ENST00000497106 TRAF3Q13114 568 aa8.1□□□□□ -1.11
USP54-215ENST00000497106 DOC2AQ14183 400 aa8.1□□□□□ -1.11
USP54-215ENST00000497106 GNA13Q14344 377 aa8.1□□□□□ -1.11
USP54-215ENST00000497106 TMEM259Q4ZIN3 620 aa8.1□□□□□ -1.11
USP54-215ENST00000497106 ZC3H12BQ5HYM0 836 aaKnown RBP8.1□□□□□ -1.11
USP54-215ENST00000497106 INTS11Q5TA45 600 aaKnown RBP8.1□□□□□ -1.11
USP54-215ENST00000497106 WASH2PQ6VEQ5 465 aa8.1□□□□□ -1.11
USP54-215ENST00000497106 RIPOR1Q6ZS17 1223 aa8.1□□□□□ -1.11
USP54-215ENST00000497106 OR6Y1Q8NGX8 325 aa8.1□□□□□ -1.11
USP54-215ENST00000497106 SLC13A3Q8WWT9 602 aa8.1□□□□□ -1.11
USP54-215ENST00000497106 ACAT2Q9BWD1 397 aa8.1□□□□□ -1.11
USP54-215ENST00000497106 KIR3DX1Q9H7L2 352 aa8.1□□□□□ -1.11
USP54-215ENST00000497106 NT5DC2Q9H857 520 aa8.1□□□□□ -1.11
USP54-215ENST00000497106 WASH6PQ9NQA3 447 aa8.1□□□□□ -1.11
USP54-215ENST00000497106 FAM120CQ9NX05 1096 aaKnown RBP8.1□□□□□ -1.11
USP54-215ENST00000497106 A0A1W2PP18 115 aa8.1□□□□□ -1.11
USP54-215ENST00000497106 SEMA3DO95025 777 aa8.1□□□□□ -1.11
USP54-215ENST00000497106 CPSF4O95639 269 aaKnown RBP8.1□□□□□ -1.11
USP54-215ENST00000497106 SBK3P0C264 359 aa8.1□□□□□ -1.11
USP54-215ENST00000497106 GPC1P35052 558 aa8.1□□□□□ -1.11
USP54-215ENST00000497106 SLC6A12P48065 614 aa8.1□□□□□ -1.11
USP54-215ENST00000497106 RGS19P49795 217 aa8.1□□□□□ -1.11
USP54-215ENST00000497106 TRAP1Q12931 704 aaKnown RBP8.1□□□□□ -1.11
USP54-215ENST00000497106 PYCR3Q53H96 274 aa8.1□□□□□ -1.11
USP54-215ENST00000497106 TJAP1Q5JTD0 557 aa8.1□□□□□ -1.11
USP54-215ENST00000497106 MFSD2AQ8NA29 543 aa8.1□□□□□ -1.11
USP54-215ENST00000497106 TTC29Q8NA56 475 aaPredicted RBP8.1□□□□□ -1.11
USP54-215ENST00000497106 NSMCE2Q96MF7 247 aa8.1□□□□□ -1.11
USP54-215ENST00000497106 BBS4Q96RK4 519 aa8.1□□□□□ -1.11
USP54-215ENST00000497106 EPB41L1Q9H4G0 881 aa8.1□□□□□ -1.11
USP54-215ENST00000497106 LYARQ9NX58 379 aaKnown RBP8.1□□□□□ -1.11
USP54-215ENST00000497106 ASIC5Q9NY37 505 aa8.1□□□□□ -1.11
USP54-215ENST00000497106 AKAP7Q9P0M2 348 aaPredicted RBP8.1□□□□□ -1.11
USP54-215ENST00000497106 MRPS33Q9Y291 106 aaKnown RBP8.1□□□□□ -1.11
USP54-215ENST00000497106 H0YIV9 168 aa8.1□□□□□ -1.11
USP54-215ENST00000497106 PCDH7O60245 1069 aa8.1□□□□□ -1.11
USP54-215ENST00000497106 CDH1P12830 882 aa8.1□□□□□ -1.11
USP54-215ENST00000497106 F3P13726 295 aa8.1□□□□□ -1.11
USP54-215ENST00000497106 RPL10P27635 214 aaKnown RBP8.1□□□□□ -1.11
USP54-215ENST00000497106 CCR10P46092 362 aa8.1□□□□□ -1.11
USP54-215ENST00000497106 CTBSQ01459 385 aa8.1□□□□□ -1.11
USP54-215ENST00000497106 SPIDRQ14159 915 aa8.1□□□□□ -1.11
USP54-215ENST00000497106 PRRT3Q5FWE3 981 aa8.1□□□□□ -1.11
USP54-215ENST00000497106 IKBIPQ70UQ0 350 aa8.1□□□□□ -1.11
USP54-215ENST00000497106 ABHD13Q7L211 337 aa8.1□□□□□ -1.11
USP54-215ENST00000497106 SLC30A8Q8IWU4 369 aa8.1□□□□□ -1.11
USP54-215ENST00000497106 PLA2G15Q8NCC3 412 aa8.1□□□□□ -1.11
USP54-215ENST00000497106 FAM46DQ8NEK8 389 aa8.1□□□□□ -1.11
USP54-215ENST00000497106 TMEM79Q9BSE2 394 aa8.1□□□□□ -1.11
USP54-215ENST00000497106 CHCHD3Q9NX63 227 aaKnown RBP8.1□□□□□ -1.11
USP54-215ENST00000497106 ARNTLO00327 626 aa8.09□□□□□ -1.11
USP54-215ENST00000497106 RFXANKO14593 260 aa8.09□□□□□ -1.11
USP54-215ENST00000497106 ATP6V1G2O95670 118 aa8.09□□□□□ -1.11
USP54-215ENST00000497106 PRIM2P49643 509 aa8.09□□□□□ -1.11
USP54-215ENST00000497106 EEFSECP57772 596 aaKnown RBP8.09□□□□□ -1.11
USP54-215ENST00000497106 PWP1Q13610 501 aa8.09□□□□□ -1.11
USP54-215ENST00000497106 GBX1Q14549 363 aa8.09□□□□□ -1.11
USP54-215ENST00000497106 PPP1R3AQ16821 1122 aa8.09□□□□□ -1.11
USP54-215ENST00000497106 TIGD2Q4W5G0 525 aa8.09□□□□□ -1.11
USP54-215ENST00000497106 KIAA1211LQ6NV74 962 aa8.09□□□□□ -1.11
USP54-215ENST00000497106 PAOXQ6QHF9 649 aa8.09□□□□□ -1.11
USP54-215ENST00000497106 GPR156Q8NFN8 814 aa8.09□□□□□ -1.11
USP54-215ENST00000497106 OR52B6Q8NGF0 335 aa8.09□□□□□ -1.11
USP54-215ENST00000497106 LMX1AQ8TE12 382 aa8.09□□□□□ -1.11
USP54-215ENST00000497106 KCNA7Q96RP8 456 aa8.09□□□□□ -1.11
USP54-215ENST00000497106 UGT2B28Q9BY64 529 aa8.09□□□□□ -1.11
USP54-215ENST00000497106 TPSD1Q9BZJ3 242 aa8.09□□□□□ -1.11
USP54-215ENST00000497106 MBNL1Q9NR56 388 aaKnown RBP8.09□□□□□ -1.11
USP54-215ENST00000497106 SEMA3GQ9NS98 782 aa8.09□□□□□ -1.11
USP54-215ENST00000497106 FOXE1O00358 373 aaPredicted RBP8.09□□□□□ -1.11
USP54-215ENST00000497106 CDH3P22223 829 aa8.09□□□□□ -1.11
USP54-215ENST00000497106 PPP2R1BP30154 601 aa8.09□□□□□ -1.11
USP54-215ENST00000497106 BUD31P41223 144 aaPredicted RBP8.09□□□□□ -1.11
USP54-215ENST00000497106 TRPC1P48995 793 aa8.09□□□□□ -1.11
USP54-215ENST00000497106 MAPK12P53778 367 aa8.09□□□□□ -1.11
USP54-215ENST00000497106 LETMD1Q6P1Q0 360 aa8.09□□□□□ -1.11
USP54-215ENST00000497106 LARP4Q71RC2 724 aaKnown RBP eCLIP8.09□□□□□ -1.11
USP54-215ENST00000497106 FKBP9P1Q75LS8 142 aa8.09□□□□□ -1.11
USP54-215ENST00000497106 PNPLA1Q8N8W4 532 aa8.09□□□□□ -1.11
Retrieved 100 of 20,778 RNA–protein pairs in 64 ms