RNA–Protein interactions for RNA: ENST00000493468.6

PRPF40A-211, Transcript of pre-mRNA processing factor 40 homolog A, humanhuman

TSL 1 (best)

Gene PRPF40A, Length 1,043 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PRPF40A-211ENST00000493468 H7C0C1 242 aa13.49□□□□□ -0.25
PRPF40A-211ENST00000493468 PRRG2O14669 202 aa13.49□□□□□ -0.25
PRPF40A-211ENST00000493468 TNNT1P13805 278 aa13.49□□□□□ -0.25
PRPF40A-211ENST00000493468 MSNP26038 577 aaKnown RBP13.49□□□□□ -0.25
PRPF40A-211ENST00000493468 CCR7P32248 378 aa13.49□□□□□ -0.25
PRPF40A-211ENST00000493468 FOXN2P32314 431 aa13.49□□□□□ -0.25
PRPF40A-211ENST00000493468 ATP5OP48047 213 aa13.49□□□□□ -0.25
PRPF40A-211ENST00000493468 ACER2Q5QJU3 275 aa13.49□□□□□ -0.25
PRPF40A-211ENST00000493468 GARNL3Q5VVW2 1013 aa13.49□□□□□ -0.25
PRPF40A-211ENST00000493468 VRK3Q8IV63 474 aa13.49□□□□□ -0.25
PRPF40A-211ENST00000493468 KATNAL2Q8IYT4 538 aa13.49□□□□□ -0.25
PRPF40A-211ENST00000493468 FAM98AQ8NCA5 519 aaKnown RBP13.49□□□□□ -0.25
PRPF40A-211ENST00000493468 SPATA13Q96N96 652 aa13.49□□□□□ -0.25
PRPF40A-211ENST00000493468 SIGLEC12Q96PQ1 595 aa13.49□□□□□ -0.25
PRPF40A-211ENST00000493468 TSSK1BQ9BXA7 367 aa13.49□□□□□ -0.25
PRPF40A-211ENST00000493468 TSPAN10Q9H1Z9 355 aaPredicted RBP13.49□□□□□ -0.25
PRPF40A-211ENST00000493468 SLC24A3Q9HC58 644 aa13.49□□□□□ -0.25
PRPF40A-211ENST00000493468 NPDC1Q9NQX5 325 aaPredicted RBP13.49□□□□□ -0.25
PRPF40A-211ENST00000493468 IMPACTQ9P2X3 320 aa13.49□□□□□ -0.25
PRPF40A-211ENST00000493468 PPT2Q9UMR5 302 aa13.49□□□□□ -0.25
PRPF40A-211ENST00000493468 HYOU1Q9Y4L1 999 aa13.49□□□□□ -0.25
PRPF40A-211ENST00000493468 UCHL5Q9Y5K5 329 aaKnown RBP eCLIP13.49□□□□□ -0.256e-11■■■■□ 22.7
PRPF40A-211ENST00000493468 PHF3Q92576 2039 aaKnown RBP13.48□□□□□ -0.25
PRPF40A-211ENST00000493468 MROH6A6NGR9 719 aa13.48□□□□□ -0.25
PRPF40A-211ENST00000493468 CDK2AP1O14519 115 aa13.48□□□□□ -0.25
PRPF40A-211ENST00000493468 STK10O94804 968 aaKnown RBP13.48□□□□□ -0.25
PRPF40A-211ENST00000493468 SLCO2B1O94956 709 aa13.48□□□□□ -0.25
PRPF40A-211ENST00000493468 EIF2S1P05198 315 aaKnown RBP13.48□□□□□ -0.25
PRPF40A-211ENST00000493468 ANXA5P08758 320 aa13.48□□□□□ -0.25
PRPF40A-211ENST00000493468 C8orf89P0DMQ9 161 aa13.48□□□□□ -0.25
PRPF40A-211ENST00000493468 CD46P15529 392 aa13.48□□□□□ -0.25
PRPF40A-211ENST00000493468 KLK2P20151 261 aa13.48□□□□□ -0.25
PRPF40A-211ENST00000493468 PSMB5P28074 263 aa13.48□□□□□ -0.25
PRPF40A-211ENST00000493468 EFNA3P52797 238 aa13.48□□□□□ -0.25
PRPF40A-211ENST00000493468 IST1P53990 364 aa13.48□□□□□ -0.25
PRPF40A-211ENST00000493468 FOLH1Q04609 750 aa13.48□□□□□ -0.25
PRPF40A-211ENST00000493468 TFF3Q07654 80 aa13.48□□□□□ -0.25
PRPF40A-211ENST00000493468 HSPA14Q0VDF9 509 aa13.48□□□□□ -0.25
PRPF40A-211ENST00000493468 OR1C1Q15619 314 aa13.48□□□□□ -0.25
PRPF40A-211ENST00000493468 MEP1AQ16819 746 aa13.48□□□□□ -0.25
PRPF40A-211ENST00000493468 KCTD11Q693B1 232 aa13.48□□□□□ -0.25
PRPF40A-211ENST00000493468 CDKL3Q8IVW4 592 aaPredicted RBP13.48□□□□□ -0.25
PRPF40A-211ENST00000493468 ZC3H7AQ8IWR0 971 aaKnown RBP13.48□□□□□ -0.25
PRPF40A-211ENST00000493468 DMRTC2Q8IXT2 367 aaPredicted RBP13.48□□□□□ -0.25
PRPF40A-211ENST00000493468 RCOR2Q8IZ40 523 aa13.48□□□□□ -0.25
PRPF40A-211ENST00000493468 RAB42Q8N4Z0 105 aa13.48□□□□□ -0.25
PRPF40A-211ENST00000493468 DNAAF3Q8N9W5 541 aa13.48□□□□□ -0.25
PRPF40A-211ENST00000493468 OR2A1Q8NGT9 310 aa13.48□□□□□ -0.25
PRPF40A-211ENST00000493468 ASB5Q8WWX0 329 aa13.48□□□□□ -0.25
PRPF40A-211ENST00000493468 RAD51AP1Q96B01 352 aa13.48□□□□□ -0.25
PRPF40A-211ENST00000493468 MIPEPQ99797 713 aa13.48□□□□□ -0.25
PRPF40A-211ENST00000493468 ZNF559Q9BR84 538 aa13.48□□□□□ -0.25
PRPF40A-211ENST00000493468 UTP23Q9BRU9 249 aaKnown RBP13.48□□□□□ -0.25
PRPF40A-211ENST00000493468 C10orf88Q9H8K7 445 aa13.48□□□□□ -0.25
PRPF40A-211ENST00000493468 CIDEBQ9UHD4 219 aa13.48□□□□□ -0.25
PRPF40A-211ENST00000493468 ASB1Q9Y576 335 aa13.48□□□□□ -0.25
PRPF40A-211ENST00000493468 MRFAP1Q9Y605 127 aa13.48□□□□□ -0.25
PRPF40A-211ENST00000493468 AKAP6Q13023 2319 aa13.47□□□□□ -0.25
PRPF40A-211ENST00000493468 TMEM200CA6NKL6 621 aa13.47□□□□□ -0.25
PRPF40A-211ENST00000493468 H0YGG7 62 aa13.47□□□□□ -0.25
PRPF40A-211ENST00000493468 FFAR3O14843 346 aa13.47□□□□□ -0.25
PRPF40A-211ENST00000493468 GPR42O15529 346 aa13.47□□□□□ -0.25
PRPF40A-211ENST00000493468 NRP2O60462 931 aa13.47□□□□□ -0.25
PRPF40A-211ENST00000493468 VPS26AO75436 327 aa13.47□□□□□ -0.25
PRPF40A-211ENST00000493468 ZNF189O75820 626 aaPredicted RBP13.47□□□□□ -0.25
PRPF40A-211ENST00000493468 APOA4P06727 396 aa13.47□□□□□ -0.25
PRPF40A-211ENST00000493468 FOSL1P15407 271 aa13.47□□□□□ -0.25
PRPF40A-211ENST00000493468 MSX1P28360 303 aa13.47□□□□□ -0.25
PRPF40A-211ENST00000493468 CD96P40200 585 aa13.47□□□□□ -0.25
PRPF40A-211ENST00000493468 CSE1LP55060 971 aaKnown RBP13.47□□□□□ -0.25
PRPF40A-211ENST00000493468 ARF3P61204 181 aaPredicted RBP13.47□□□□□ -0.25
PRPF40A-211ENST00000493468 PPP2R2AP63151 447 aa13.47□□□□□ -0.25
PRPF40A-211ENST00000493468 SPARCL1Q14515 664 aa13.47□□□□□ -0.25
PRPF40A-211ENST00000493468 IQCB1Q15051 598 aa13.47□□□□□ -0.25
PRPF40A-211ENST00000493468 TTC23LQ6PF05 361 aa13.47□□□□□ -0.25
PRPF40A-211ENST00000493468 TMEM200AQ86VY9 491 aa13.47□□□□□ -0.25
PRPF40A-211ENST00000493468 ARHGEF39Q8N4T4 335 aa13.47□□□□□ -0.25
PRPF40A-211ENST00000493468 HORMAD2Q8N7B1 307 aa13.47□□□□□ -0.25
PRPF40A-211ENST00000493468 CFAP61Q8NHU2 1237 aa13.47□□□□□ -0.25
PRPF40A-211ENST00000493468 METTL21AQ8WXB1 218 aa13.47□□□□□ -0.25
PRPF40A-211ENST00000493468 MMABQ96EY8 250 aaPredicted RBP13.47□□□□□ -0.25
PRPF40A-211ENST00000493468 ALS2CR12Q96Q35 445 aa13.47□□□□□ -0.25
PRPF40A-211ENST00000493468 TTC1Q99614 292 aa13.47□□□□□ -0.25
PRPF40A-211ENST00000493468 YIPF2Q9BWQ6 316 aa13.47□□□□□ -0.25
PRPF40A-211ENST00000493468 CARD6Q9BX69 1037 aa13.47□□□□□ -0.25
PRPF40A-211ENST00000493468 HES7Q9BYE0 225 aa13.47□□□□□ -0.25
PRPF40A-211ENST00000493468 DLL4Q9NR61 685 aa13.47□□□□□ -0.25
PRPF40A-211ENST00000493468 KLHL1Q9NR64 748 aa13.47□□□□□ -0.25
PRPF40A-211ENST00000493468 STOX2Q9P2F5 926 aaPredicted RBP13.47□□□□□ -0.25
PRPF40A-211ENST00000493468 C19orf25Q9UFG5 118 aaPredicted RBP13.47□□□□□ -0.25
PRPF40A-211ENST00000493468 RUVBL1Q9Y265 456 aaKnown RBP13.47□□□□□ -0.25
PRPF40A-211ENST00000493468 NSD1Q96L73 2696 aaPredicted RBP13.47□□□□□ -0.25
PRPF40A-211ENST00000493468 A0A1W2PPV9 198 aa13.46□□□□□ -0.25
PRPF40A-211ENST00000493468 A8MUI8 341 aa13.46□□□□□ -0.25
PRPF40A-211ENST00000493468 AKR1B10O60218 316 aa13.46□□□□□ -0.25
PRPF40A-211ENST00000493468 OR1I1O60431 355 aa13.46□□□□□ -0.25
PRPF40A-211ENST00000493468 SEC24DO94855 1032 aaPredicted RBP13.46□□□□□ -0.25
PRPF40A-211ENST00000493468 SUN1O94901 812 aa13.46□□□□□ -0.25
PRPF40A-211ENST00000493468 CHRNB4P30926 498 aa13.46□□□□□ -0.25
PRPF40A-211ENST00000493468 UBASH3AP57075 661 aa13.46□□□□□ -0.25
Retrieved 100 of 20,778 RNA–protein pairs in 30.1 ms