RNA–Protein interactions for RNA: ENST00000489403.1

CPSF3-204, Transcript of cleavage and polyadenylation specific factor 3, humanhuman

TSL 5

Gene CPSF3, Length 688 nt, Biotype processed transcript, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF3-204ENST00000489403 BRIX1Q8TDN6 353 aaKnown RBP11.8□□□□□ -0.52
CPSF3-204ENST00000489403 PSMF1Q92530 271 aa11.8□□□□□ -0.52
CPSF3-204ENST00000489403 LPGAT1Q92604 370 aa11.8□□□□□ -0.52
CPSF3-204ENST00000489403 FAM136AQ96C01 138 aa11.8□□□□□ -0.52
CPSF3-204ENST00000489403 CABS1Q96KC9 395 aa11.8□□□□□ -0.52
CPSF3-204ENST00000489403 PLCD4Q9BRC7 762 aa11.8□□□□□ -0.52
CPSF3-204ENST00000489403 MRPS30Q9NP92 439 aaKnown RBP11.8□□□□□ -0.52
CPSF3-204ENST00000489403 OLAHQ9NV23 265 aa11.8□□□□□ -0.52
CPSF3-204ENST00000489403 SYBUQ9NX95 663 aa11.8□□□□□ -0.52
CPSF3-204ENST00000489403 PTGFRNQ9P2B2 879 aa11.8□□□□□ -0.52
CPSF3-204ENST00000489403 RUVBL1Q9Y265 456 aaKnown RBP11.8□□□□□ -0.52
CPSF3-204ENST00000489403 MRPS2Q9Y399 296 aaKnown RBP11.8□□□□□ -0.52
CPSF3-204ENST00000489403 CSMD1Q96PZ7 3565 aa11.79□□□□□ -0.52
CPSF3-204ENST00000489403 HEATR5BQ9P2D3 2071 aa11.79□□□□□ -0.52
CPSF3-204ENST00000489403 IGHV1-45A0A0A0MS14 117 aa11.79□□□□□ -0.52
CPSF3-204ENST00000489403 A0A1W2PQ72 361 aa11.79□□□□□ -0.52
CPSF3-204ENST00000489403 MYO1CO00159 1063 aa11.79□□□□□ -0.52
CPSF3-204ENST00000489403 VPS26AO75436 327 aa11.79□□□□□ -0.52
CPSF3-204ENST00000489403 JRKO75564 520 aa11.79□□□□□ -0.52
CPSF3-204ENST00000489403 VAPBO95292 243 aa11.79□□□□□ -0.52
CPSF3-204ENST00000489403 CELA2AP08217 269 aa11.79□□□□□ -0.52
CPSF3-204ENST00000489403 TNFRSF8P28908 595 aa11.79□□□□□ -0.52
CPSF3-204ENST00000489403 ATP5DP30049 168 aa11.79□□□□□ -0.52
CPSF3-204ENST00000489403 NPY2RP49146 381 aa11.79□□□□□ -0.52
CPSF3-204ENST00000489403 TDGF1P3P51864 188 aa11.79□□□□□ -0.52
CPSF3-204ENST00000489403 EMP2P54851 167 aa11.79□□□□□ -0.52
CPSF3-204ENST00000489403 EMP3P54852 163 aa11.79□□□□□ -0.52
CPSF3-204ENST00000489403 EEF1A2Q05639 463 aaKnown RBP11.79□□□□□ -0.52
CPSF3-204ENST00000489403 DSG2Q14126 1118 aa11.79□□□□□ -0.52
CPSF3-204ENST00000489403 CCNG2Q16589 344 aa11.79□□□□□ -0.52
CPSF3-204ENST00000489403 KCTD19Q17RG1 926 aaPredicted RBP11.79□□□□□ -0.52
CPSF3-204ENST00000489403 HKDC1Q2TB90 917 aa11.79□□□□□ -0.52
CPSF3-204ENST00000489403 ANKRD20A4Q4UJ75 823 aa11.79□□□□□ -0.52
CPSF3-204ENST00000489403 ACSBG2Q5FVE4 666 aa11.79□□□□□ -0.52
CPSF3-204ENST00000489403 MRNIPQ6NTE8 343 aa11.79□□□□□ -0.52
CPSF3-204ENST00000489403 NDUFAF7Q7L592 441 aa11.79□□□□□ -0.52
CPSF3-204ENST00000489403 FJX1Q86VR8 437 aa11.79□□□□□ -0.52
CPSF3-204ENST00000489403 ARHGEF39Q8N4T4 335 aa11.79□□□□□ -0.52
CPSF3-204ENST00000489403 SIRT6Q8N6T7 355 aa11.79□□□□□ -0.52
CPSF3-204ENST00000489403 CSNK1A1LQ8N752 337 aa11.79□□□□□ -0.52
CPSF3-204ENST00000489403 AMER3Q8N944 861 aa11.79□□□□□ -0.52
CPSF3-204ENST00000489403 MVB12AQ96EY5 273 aa11.79□□□□□ -0.52
CPSF3-204ENST00000489403 MAGEB10Q96LZ2 347 aaPredicted RBP11.79□□□□□ -0.52
CPSF3-204ENST00000489403 TAAR6Q96RI8 345 aa11.79□□□□□ -0.52
CPSF3-204ENST00000489403 KIFC1Q9BW19 673 aa11.79□□□□□ -0.52
CPSF3-204ENST00000489403 C14orf105Q9NVL8 296 aa11.79□□□□□ -0.52
CPSF3-204ENST00000489403 PLA2G3Q9NZ20 509 aa11.79□□□□□ -0.52
CPSF3-204ENST00000489403 BFARQ9NZS9 450 aa11.79□□□□□ -0.52
CPSF3-204ENST00000489403 GALPQ9UBC7 116 aa11.79□□□□□ -0.52
CPSF3-204ENST00000489403 TRPC4Q9UBN4 977 aa11.79□□□□□ -0.52
CPSF3-204ENST00000489403 DIDO1Q9BTC0 2240 aaKnown RBP11.79□□□□□ -0.52
CPSF3-204ENST00000489403 TCRBV7S3A2A0A539 114 aa11.78□□□□□ -0.52
CPSF3-204ENST00000489403 DYTNA2CJ06 578 aa11.78□□□□□ -0.52
CPSF3-204ENST00000489403 H3BMM5 538 aa11.78□□□□□ -0.52
CPSF3-204ENST00000489403 AP3B1O00203 1094 aa11.78□□□□□ -0.52
CPSF3-204ENST00000489403 PRPF4O43172 522 aaKnown RBP eCLIP11.78□□□□□ -0.52
CPSF3-204ENST00000489403 FOXS1O43638 330 aa11.78□□□□□ -0.52
CPSF3-204ENST00000489403 PHF2O75151 1096 aa11.78□□□□□ -0.52
CPSF3-204ENST00000489403 PSIP1O75475 530 aaKnown RBP11.78□□□□□ -0.52
CPSF3-204ENST00000489403 ESR1P03372 595 aa11.78□□□□□ -0.52
CPSF3-204ENST00000489403 SERPINA7P05543 415 aa11.78□□□□□ -0.52
CPSF3-204ENST00000489403 PRF1P14222 555 aa11.78□□□□□ -0.52
CPSF3-204ENST00000489403 FDXRP22570 491 aa11.78□□□□□ -0.52
CPSF3-204ENST00000489403 CXCR2P25025 360 aa11.78□□□□□ -0.52
CPSF3-204ENST00000489403 RPA3P35244 121 aaPredicted RBP11.78□□□□□ -0.52
CPSF3-204ENST00000489403 SLC26A3P40879 764 aa11.78□□□□□ -0.52
CPSF3-204ENST00000489403 TNFSF10P50591 281 aa11.78□□□□□ -0.52
CPSF3-204ENST00000489403 EFNA3P52797 238 aa11.78□□□□□ -0.52
CPSF3-204ENST00000489403 ADARP55265 1226 aaKnown RBP11.78□□□□□ -0.52
CPSF3-204ENST00000489403 KCNK10P57789 538 aa11.78□□□□□ -0.52
CPSF3-204ENST00000489403 TSTA3Q13630 321 aaPredicted RBP11.78□□□□□ -0.52
CPSF3-204ENST00000489403 KCNJ11Q14654 390 aa11.78□□□□□ -0.52
CPSF3-204ENST00000489403 INAQ16352 499 aa11.78□□□□□ -0.52
CPSF3-204ENST00000489403 KLHL38Q2WGJ6 581 aa11.78□□□□□ -0.52
CPSF3-204ENST00000489403 RNF187Q5TA31 235 aaPredicted RBP11.78□□□□□ -0.52
CPSF3-204ENST00000489403 MEI1Q5TIA1 1274 aa11.78□□□□□ -0.52
CPSF3-204ENST00000489403 FAAH2Q6GMR7 532 aa11.78□□□□□ -0.52
CPSF3-204ENST00000489403 ZNF425Q6IV72 752 aa11.78□□□□□ -0.52
CPSF3-204ENST00000489403 LRRC8BQ6P9F7 803 aa11.78□□□□□ -0.52
CPSF3-204ENST00000489403 DRICH1Q6PGQ1 229 aaPredicted RBP11.78□□□□□ -0.52
CPSF3-204ENST00000489403 SRRM1Q8IYB3 904 aaKnown RBP11.78□□□□□ -0.52
CPSF3-204ENST00000489403 AMER2Q8N7J2 671 aa11.78□□□□□ -0.52
CPSF3-204ENST00000489403 PPFIBP2Q8ND30 876 aa11.78□□□□□ -0.52
CPSF3-204ENST00000489403 SMPDL3AQ92484 453 aa11.78□□□□□ -0.52
CPSF3-204ENST00000489403 NR4A3Q92570 626 aa11.78□□□□□ -0.52
CPSF3-204ENST00000489403 HAS2Q92819 552 aa11.78□□□□□ -0.52
CPSF3-204ENST00000489403 MMABQ96EY8 250 aaPredicted RBP11.78□□□□□ -0.52
CPSF3-204ENST00000489403 OR2A5Q96R48 311 aa11.78□□□□□ -0.52
CPSF3-204ENST00000489403 YIPF2Q9BWQ6 316 aa11.78□□□□□ -0.52
CPSF3-204ENST00000489403 TGIF2Q9GZN2 237 aa11.78□□□□□ -0.52
CPSF3-204ENST00000489403 TAC3Q9UHF0 121 aa11.78□□□□□ -0.52
CPSF3-204ENST00000489403 GUCA1BQ9UMX6 200 aa11.78□□□□□ -0.52
CPSF3-204ENST00000489403 SOX13Q9UN79 622 aa11.78□□□□□ -0.52
CPSF3-204ENST00000489403 CDC14AQ9UNH5 594 aa11.78□□□□□ -0.52
CPSF3-204ENST00000489403 ENTPD4Q9Y227 616 aa11.78□□□□□ -0.52
CPSF3-204ENST00000489403 CRYL1Q9Y2S2 319 aa11.78□□□□□ -0.52
CPSF3-204ENST00000489403 CNTRLQ7Z7A1 2325 aa11.78□□□□□ -0.52
CPSF3-204ENST00000489403 SVILO95425 2214 aa11.78□□□□□ -0.52
CPSF3-204ENST00000489403 MYO9AB2RTY4 2548 aa11.78□□□□□ -0.52
CPSF3-204ENST00000489403 LOC102723996A0A087X1L8 192 aa11.77□□□□□ -0.53
Retrieved 100 of 20,778 RNA–protein pairs in 31 ms