RNA–Protein interactions for RNA: ENST00000488543.1

HDAC6-230, Transcript of histone deacetylase 6, humanhuman

TSL 2

Gene HDAC6, Length 2,484 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC6-230ENST00000488543 CAPN3P20807 821 aa11.78□□□□□ -0.52
HDAC6-230ENST00000488543 MAP4P27816 1152 aaKnown RBP11.78□□□□□ -0.52
HDAC6-230ENST00000488543 TEAD1P28347 426 aa11.78□□□□□ -0.52
HDAC6-230ENST00000488543 IGFALSP35858 605 aa11.78□□□□□ -0.52
HDAC6-230ENST00000488543 TRIM23P36406 574 aa11.78□□□□□ -0.52
HDAC6-230ENST00000488543 NFE2L1Q14494 772 aa11.78□□□□□ -0.52
HDAC6-230ENST00000488543 VPS26BQ4G0F5 336 aa11.78□□□□□ -0.52
HDAC6-230ENST00000488543 PDCD4Q53EL6 469 aaKnown RBP11.78□□□□□ -0.52
HDAC6-230ENST00000488543 KIAA1161Q6NSJ0 714 aa11.78□□□□□ -0.52
HDAC6-230ENST00000488543 C8orf82Q6P1X6 216 aaPredicted RBP11.78□□□□□ -0.52
HDAC6-230ENST00000488543 TRIM46Q7Z4K8 759 aa11.78□□□□□ -0.52
HDAC6-230ENST00000488543 SYNPOQ8N3V7 929 aa11.78□□□□□ -0.52
HDAC6-230ENST00000488543 L3MBTL4Q8NA19 623 aa11.78□□□□□ -0.52
HDAC6-230ENST00000488543 FBXO15Q8NCQ5 510 aaPredicted RBP11.78□□□□□ -0.52
HDAC6-230ENST00000488543 HM13Q8TCT9 377 aa11.78□□□□□ -0.52
HDAC6-230ENST00000488543 TOE1Q96GM8 510 aaKnown RBP11.78□□□□□ -0.52
HDAC6-230ENST00000488543 CCDC138Q96M89 665 aa11.78□□□□□ -0.52
HDAC6-230ENST00000488543 RBM38Q9H0Z9 239 aaKnown RBP11.78□□□□□ -0.52
HDAC6-230ENST00000488543 Q9H521 79 aa11.78□□□□□ -0.52
HDAC6-230ENST00000488543 PREBQ9HCU5 417 aa11.78□□□□□ -0.52
HDAC6-230ENST00000488543 USP36Q9P275 1121 aaKnown RBP11.78□□□□□ -0.52
HDAC6-230ENST00000488543 CIDEBQ9UHD4 219 aa11.78□□□□□ -0.52
HDAC6-230ENST00000488543 FRYLO94915 3013 aa11.78□□□□□ -0.52
HDAC6-230ENST00000488543 WDR87Q6ZQQ6 2873 aa11.77□□□□□ -0.52
HDAC6-230ENST00000488543 PABPN1LA6NDY0 278 aaKnown RBP11.77□□□□□ -0.53
HDAC6-230ENST00000488543 MGAT4DA6NG13 374 aa11.77□□□□□ -0.53
HDAC6-230ENST00000488543 HNRNPRO43390 633 aaKnown RBP11.77□□□□□ -0.53
HDAC6-230ENST00000488543 TNFAIP8O95379 198 aa11.77□□□□□ -0.53
HDAC6-230ENST00000488543 MT-ND1P03886 318 aa11.77□□□□□ -0.53
HDAC6-230ENST00000488543 ACADLP28330 430 aa11.77□□□□□ -0.53
HDAC6-230ENST00000488543 IMPA1P29218 277 aa11.77□□□□□ -0.53
HDAC6-230ENST00000488543 MAPK9P45984 424 aa11.77□□□□□ -0.53
HDAC6-230ENST00000488543 EMX2Q04743 252 aa11.77□□□□□ -0.53
HDAC6-230ENST00000488543 GRIK2Q13002 908 aa11.77□□□□□ -0.53
HDAC6-230ENST00000488543 MTAPQ13126 283 aa11.77□□□□□ -0.53
HDAC6-230ENST00000488543 NR6A1Q15406 480 aa11.77□□□□□ -0.53
HDAC6-230ENST00000488543 ATP6AP1LQ52LC2 224 aa11.77□□□□□ -0.53
HDAC6-230ENST00000488543 AGTRAPQ6RW13 159 aa11.77□□□□□ -0.53
HDAC6-230ENST00000488543 CHERPQ8IWX8 916 aaKnown RBP11.77□□□□□ -0.53
HDAC6-230ENST00000488543 DEFB119Q8N690 84 aa11.77□□□□□ -0.53
HDAC6-230ENST00000488543 CANT1Q8WVQ1 401 aa11.77□□□□□ -0.53
HDAC6-230ENST00000488543 DGCR14Q96DF8 476 aaKnown RBP11.77□□□□□ -0.53
HDAC6-230ENST00000488543 WDR26Q9H7D7 661 aa11.77□□□□□ -0.53
HDAC6-230ENST00000488543 ACTR8Q9H981 624 aa11.77□□□□□ -0.53
HDAC6-230ENST00000488543 MRPL40Q9NQ50 206 aaKnown RBP11.77□□□□□ -0.53
HDAC6-230ENST00000488543 SLC23A2Q9UGH3 650 aa11.77□□□□□ -0.53
HDAC6-230ENST00000488543 ZNHIT2Q9UHR6 403 aa11.77□□□□□ -0.53
HDAC6-230ENST00000488543 AURKCQ9UQB9 309 aa11.77□□□□□ -0.53
HDAC6-230ENST00000488543 V9GYQ6 96 aa11.77□□□□□ -0.53
HDAC6-230ENST00000488543 CACNA1IQ9P0X4 2223 aa11.77□□□□□ -0.53
HDAC6-230ENST00000488543 SMIM31A0A1B0GVY4 71 aa11.77□□□□□ -0.53
HDAC6-230ENST00000488543 PI15O43692 258 aa11.77□□□□□ -0.53
HDAC6-230ENST00000488543 SEMA4FO95754 770 aa11.77□□□□□ -0.53
HDAC6-230ENST00000488543 CLIC3O95833 236 aa11.77□□□□□ -0.53
HDAC6-230ENST00000488543 SLC5A2P31639 672 aa11.77□□□□□ -0.53
HDAC6-230ENST00000488543 UFM1P61960 85 aa11.77□□□□□ -0.53
HDAC6-230ENST00000488543 DYNC1I2Q13409 638 aaKnown RBP11.77□□□□□ -0.53
HDAC6-230ENST00000488543 APOFQ13790 326 aa11.77□□□□□ -0.53
HDAC6-230ENST00000488543 BLOC1S3Q6QNY0 202 aa11.77□□□□□ -0.53
HDAC6-230ENST00000488543 HACD2Q6Y1H2 254 aa11.77□□□□□ -0.53
HDAC6-230ENST00000488543 FNDC5Q8NAU1 212 aa11.77□□□□□ -0.53
HDAC6-230ENST00000488543 PJA1Q8NG27 643 aa11.77□□□□□ -0.53
HDAC6-230ENST00000488543 OR56A3Q8NH54 315 aa11.77□□□□□ -0.53
HDAC6-230ENST00000488543 B4GALNT2Q8NHY0 566 aa11.77□□□□□ -0.53
HDAC6-230ENST00000488543 OR4K3Q96R72 315 aa11.77□□□□□ -0.53
HDAC6-230ENST00000488543 GPR174Q9BXC1 333 aa11.77□□□□□ -0.53
HDAC6-230ENST00000488543 MRPS26Q9BYN8 205 aaKnown RBP11.77□□□□□ -0.53
HDAC6-230ENST00000488543 ZDHHC5Q9C0B5 715 aa11.77□□□□□ -0.53
HDAC6-230ENST00000488543 OR52A5Q9H2C5 316 aa11.77□□□□□ -0.53
HDAC6-230ENST00000488543 PIF1Q9H611 641 aa11.77□□□□□ -0.53
HDAC6-230ENST00000488543 INTS7Q9NVH2 962 aaKnown RBP11.77□□□□□ -0.53
HDAC6-230ENST00000488543 ZNF490Q9ULM2 529 aaPredicted RBP11.77□□□□□ -0.53
HDAC6-230ENST00000488543 USP22Q9UPT9 525 aa11.77□□□□□ -0.53
HDAC6-230ENST00000488543 ARHGAP10A1A4S6 786 aa11.76□□□□□ -0.53
HDAC6-230ENST00000488543 SLC28A1O00337 649 aa11.76□□□□□ -0.53
HDAC6-230ENST00000488543 NME4O00746 187 aa11.76□□□□□ -0.53
HDAC6-230ENST00000488543 LATO43561 262 aa11.76□□□□□ -0.53
HDAC6-230ENST00000488543 AKAP10O43572 662 aa11.76□□□□□ -0.53
HDAC6-230ENST00000488543 SEC24DO94855 1032 aaPredicted RBP11.76□□□□□ -0.53
HDAC6-230ENST00000488543 SLC16A8O95907 504 aa11.76□□□□□ -0.53
HDAC6-230ENST00000488543 C8BP07358 591 aa11.76□□□□□ -0.53
HDAC6-230ENST00000488543 IL12AP29459 219 aa11.76□□□□□ -0.53
HDAC6-230ENST00000488543 HMGCS1Q01581 520 aa11.76□□□□□ -0.53
HDAC6-230ENST00000488543 NAE1Q13564 534 aa11.76□□□□□ -0.53
HDAC6-230ENST00000488543 TCEA2Q15560 299 aa11.76□□□□□ -0.53
HDAC6-230ENST00000488543 AP5B1Q2VPB7 878 aa11.76□□□□□ -0.53
HDAC6-230ENST00000488543 MAP7D1Q3KQU3 841 aa11.76□□□□□ -0.53
HDAC6-230ENST00000488543 RFTN2Q52LD8 501 aaPredicted RBP11.76□□□□□ -0.53
HDAC6-230ENST00000488543 SGO1Q5FBB7 561 aa11.76□□□□□ -0.53
HDAC6-230ENST00000488543 THOC6Q86W42 341 aaKnown RBP11.76□□□□□ -0.53
HDAC6-230ENST00000488543 IFNEQ86WN2 208 aa11.76□□□□□ -0.53
HDAC6-230ENST00000488543 SPPL2CQ8IUH8 684 aa11.76□□□□□ -0.53
HDAC6-230ENST00000488543 UBALD2Q8IYN6 164 aa11.76□□□□□ -0.53
HDAC6-230ENST00000488543 OXR1Q8N573 874 aa11.76□□□□□ -0.53
HDAC6-230ENST00000488543 OR2T34Q8NGX1 318 aa11.76□□□□□ -0.53
HDAC6-230ENST00000488543 NUDT8Q8WV74 236 aa11.76□□□□□ -0.53
HDAC6-230ENST00000488543 ATL1Q8WXF7 558 aa11.76□□□□□ -0.53
HDAC6-230ENST00000488543 PPP3R2Q96LZ3 170 aa11.76□□□□□ -0.53
HDAC6-230ENST00000488543 FOPNLQ96NB1 174 aa11.76□□□□□ -0.53
HDAC6-230ENST00000488543 NELL2Q99435 816 aa11.76□□□□□ -0.53
Retrieved 100 of 20,778 RNA–protein pairs in 42.2 ms