RNA–Protein interactions for RNA: ENST00000487284.2

CUX1-209, Transcript of cut like homeobox 1, humanhuman

TSL 2

Gene CUX1, Length 1,566 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-209ENST00000487284 SLC7A8Q9UHI5 535 aa13.72□□□□□ -0.21
CUX1-209ENST00000487284 PRPF19Q9UMS4 504 aaKnown RBP13.72□□□□□ -0.21
CUX1-209ENST00000487284 PSMD13Q9UNM6 376 aa13.72□□□□□ -0.21
CUX1-209ENST00000487284 CROCCQ5TZA2 2017 aa13.72□□□□□ -0.21
CUX1-209ENST00000487284 BBIP1A8MTZ0 92 aa13.71□□□□□ -0.21
CUX1-209ENST00000487284 E7ENX8 843 aa13.71□□□□□ -0.21
CUX1-209ENST00000487284 E7EQ34 232 aa13.71□□□□□ -0.21
CUX1-209ENST00000487284 IFRD1O00458 451 aaPredicted RBP13.71□□□□□ -0.21
CUX1-209ENST00000487284 CLGNO14967 610 aa13.71□□□□□ -0.21
CUX1-209ENST00000487284 PDYNP01213 254 aa13.71□□□□□ -0.21
CUX1-209ENST00000487284 CD22P20273 847 aa13.71□□□□□ -0.21
CUX1-209ENST00000487284 PRPH2P23942 346 aa13.71□□□□□ -0.21
CUX1-209ENST00000487284 HNF4AP41235 474 aa13.71□□□□□ -0.21
CUX1-209ENST00000487284 PNLIPRP1P54315 467 aa13.71□□□□□ -0.21
CUX1-209ENST00000487284 TAP2Q03519 686 aa13.71□□□□□ -0.21
CUX1-209ENST00000487284 TBL3Q12788 808 aaKnown RBP13.71□□□□□ -0.21
CUX1-209ENST00000487284 LRP8Q14114 963 aa13.71□□□□□ -0.21
CUX1-209ENST00000487284 TEAD4Q15561 434 aa13.71□□□□□ -0.21
CUX1-209ENST00000487284 FRG2Q64ET8 278 aa13.71□□□□□ -0.21
CUX1-209ENST00000487284 REP15Q6BDI9 236 aa13.71□□□□□ -0.21
CUX1-209ENST00000487284 GRHL2Q6ISB3 625 aa13.71□□□□□ -0.21
CUX1-209ENST00000487284 CAPN13Q6MZZ7 669 aaPredicted RBP13.71□□□□□ -0.21
CUX1-209ENST00000487284 BLOC1S3Q6QNY0 202 aa13.71□□□□□ -0.21
CUX1-209ENST00000487284 HACD2Q6Y1H2 254 aa13.71□□□□□ -0.21
CUX1-209ENST00000487284 ZFAND4Q86XD8 727 aa13.71□□□□□ -0.21
CUX1-209ENST00000487284 OR5K2Q8NHB8 316 aa13.71□□□□□ -0.21
CUX1-209ENST00000487284 SELENOMQ8WWX9 145 aa13.71□□□□□ -0.21
CUX1-209ENST00000487284 WDR34Q96EX3 536 aa13.71□□□□□ -0.21
CUX1-209ENST00000487284 FRG2BQ96QU4 278 aa13.71□□□□□ -0.21
CUX1-209ENST00000487284 NPAS2Q99743 824 aa13.71□□□□□ -0.21
CUX1-209ENST00000487284 MRPL1Q9BYD6 325 aaKnown RBP13.71□□□□□ -0.21
CUX1-209ENST00000487284 ACPTQ9BZG2 426 aa13.71□□□□□ -0.21
CUX1-209ENST00000487284 ELOVL6Q9H5J4 265 aa13.71□□□□□ -0.21
CUX1-209ENST00000487284 NOP53Q9NZM5 478 aaKnown RBP13.71□□□□□ -0.21
CUX1-209ENST00000487284 KCNE2Q9Y6J6 123 aa13.71□□□□□ -0.21
CUX1-209ENST00000487284 GPR179Q6PRD1 2367 aa13.71□□□□□ -0.21
CUX1-209ENST00000487284 ADAMTS9Q9P2N4 1935 aa13.71□□□□□ -0.21
CUX1-209ENST00000487284 ARHGEF17Q96PE2 2063 aaPredicted RBP13.71□□□□□ -0.21
CUX1-209ENST00000487284 NR5A2O00482 541 aa13.71□□□□□ -0.22
CUX1-209ENST00000487284 NRP2O60462 931 aa13.71□□□□□ -0.22
CUX1-209ENST00000487284 CSF2P04141 144 aa13.71□□□□□ -0.22
CUX1-209ENST00000487284 CELA2BP08218 269 aaPredicted RBP13.71□□□□□ -0.22
CUX1-209ENST00000487284 NME1P15531 152 aaKnown RBP13.71□□□□□ -0.22
CUX1-209ENST00000487284 JUNDP17535 347 aa13.71□□□□□ -0.22
CUX1-209ENST00000487284 GNAZP19086 355 aa13.71□□□□□ -0.22
CUX1-209ENST00000487284 RPL10P27635 214 aaKnown RBP13.71□□□□□ -0.22
CUX1-209ENST00000487284 CTSKP43235 329 aa13.71□□□□□ -0.22
CUX1-209ENST00000487284 ZFP36L2P47974 494 aaKnown RBP13.71□□□□□ -0.22
CUX1-209ENST00000487284 BLKP51451 505 aa13.71□□□□□ -0.22
CUX1-209ENST00000487284 CLCNKAP51800 687 aa13.71□□□□□ -0.22
CUX1-209ENST00000487284 BNC1Q01954 994 aa13.71□□□□□ -0.22
CUX1-209ENST00000487284 MAD2L1Q13257 205 aaPredicted RBP13.71□□□□□ -0.22
CUX1-209ENST00000487284 DOC2AQ14183 400 aa13.71□□□□□ -0.22
CUX1-209ENST00000487284 RCAN2Q14206 197 aa13.71□□□□□ -0.22
CUX1-209ENST00000487284 ARHGAP19Q14CB8 494 aa13.71□□□□□ -0.22
CUX1-209ENST00000487284 IMPG1Q17R60 797 aa13.71□□□□□ -0.22
CUX1-209ENST00000487284 RFTN2Q52LD8 501 aaPredicted RBP13.71□□□□□ -0.22
CUX1-209ENST00000487284 SGO1Q5FBB7 561 aa13.71□□□□□ -0.22
CUX1-209ENST00000487284 XKR6Q5GH73 641 aa13.71□□□□□ -0.22
CUX1-209ENST00000487284 NET1Q7Z628 596 aaPredicted RBP13.71□□□□□ -0.22
CUX1-209ENST00000487284 PHC3Q8NDX5 983 aa13.71□□□□□ -0.22
CUX1-209ENST00000487284 LRRC61Q9BV99 259 aa13.71□□□□□ -0.22
CUX1-209ENST00000487284 ZMYND15Q9H091 742 aa13.71□□□□□ -0.22
CUX1-209ENST00000487284 WDR41Q9HAD4 459 aa13.71□□□□□ -0.22
CUX1-209ENST00000487284 LRTM1Q9HBL6 345 aa13.71□□□□□ -0.22
CUX1-209ENST00000487284 SLC52A3Q9NQ40 469 aa13.71□□□□□ -0.22
CUX1-209ENST00000487284 CCDC177Q9NQR7 707 aaPredicted RBP13.71□□□□□ -0.22
CUX1-209ENST00000487284 APOBEC3BQ9UH17 382 aaKnown RBP13.71□□□□□ -0.22
CUX1-209ENST00000487284 BAIAP2L1Q9UHR4 511 aa13.71□□□□□ -0.22
CUX1-209ENST00000487284 POLR3HQ9Y535 204 aaPredicted RBP13.71□□□□□ -0.22
CUX1-209ENST00000487284 SNRNP200O75643 2136 aaKnown RBP13.7□□□□□ -0.22
CUX1-209ENST00000487284 PATE3B3GLJ2 98 aa13.7□□□□□ -0.22
CUX1-209ENST00000487284 H0YIV9 168 aa13.7□□□□□ -0.22
CUX1-209ENST00000487284 MRASO14807 208 aa13.7□□□□□ -0.22
CUX1-209ENST00000487284 ANKRD28O15084 1053 aa13.7□□□□□ -0.22
CUX1-209ENST00000487284 CIB2O75838 187 aa13.7□□□□□ -0.22
CUX1-209ENST00000487284 RSL1D1O76021 490 aaKnown RBP13.7□□□□□ -0.22
CUX1-209ENST00000487284 CTSEP14091 401 aa13.7□□□□□ -0.22
CUX1-209ENST00000487284 SLC2A4P14672 509 aa13.7□□□□□ -0.22
CUX1-209ENST00000487284 NPPBP16860 134 aa13.7□□□□□ -0.22
CUX1-209ENST00000487284 CAPN3P20807 821 aa13.7□□□□□ -0.22
CUX1-209ENST00000487284 CCND1P24385 295 aa13.7□□□□□ -0.22
CUX1-209ENST00000487284 HSD17B2P37059 387 aa13.7□□□□□ -0.22
CUX1-209ENST00000487284 ACTR1BP42025 376 aa13.7□□□□□ -0.22
CUX1-209ENST00000487284 MTTPP55157 894 aa13.7□□□□□ -0.22
CUX1-209ENST00000487284 NME5P56597 212 aa13.7□□□□□ -0.22
CUX1-209ENST00000487284 ACTR1AP61163 376 aa13.7□□□□□ -0.22
CUX1-209ENST00000487284 RPL38P63173 70 aaKnown RBP13.7□□□□□ -0.22
CUX1-209ENST00000487284 HMGCS1Q01581 520 aa13.7□□□□□ -0.22
CUX1-209ENST00000487284 CSTF3Q12996 717 aaKnown RBP13.7□□□□□ -0.22
CUX1-209ENST00000487284 ART3Q13508 389 aa13.7□□□□□ -0.22
CUX1-209ENST00000487284 C1orf61Q13536 156 aa13.7□□□□□ -0.22
CUX1-209ENST00000487284 SNCBQ16143 134 aa13.7□□□□□ -0.22
CUX1-209ENST00000487284 TRMT5Q32P41 509 aaKnown RBP13.7□□□□□ -0.22
CUX1-209ENST00000487284 MMEL1Q495T6 779 aa13.7□□□□□ -0.22
CUX1-209ENST00000487284 PRRT3Q5FWE3 981 aa13.7□□□□□ -0.22
CUX1-209ENST00000487284 COQ5Q5HYK3 327 aa13.7□□□□□ -0.22
CUX1-209ENST00000487284 ZC3H14Q6PJT7 736 aaKnown RBP13.7□□□□□ -0.22
CUX1-209ENST00000487284 SLC30A9Q6PML9 568 aa13.7□□□□□ -0.22
CUX1-209ENST00000487284 CYP20A1Q6UW02 462 aa13.7□□□□□ -0.22
Retrieved 100 of 20,778 RNA–protein pairs in 20.2 ms