RNA–Protein interactions for RNA: ENST00000486549.5

USP4-212, Transcript of ubiquitin specific peptidase 4, humanhuman

TSL 5

Gene USP4, Length 749 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP4-212ENST00000486549 TLDC1Q6P9B6 456 aa14.15□□□□□ -0.14
USP4-212ENST00000486549 ADAMTSL2Q86TH1 951 aa14.15□□□□□ -0.14
USP4-212ENST00000486549 FBXL8Q96CD0 374 aa14.15□□□□□ -0.14
USP4-212ENST00000486549 PAFAH2Q99487 392 aa14.15□□□□□ -0.14
USP4-212ENST00000486549 PLCD4Q9BRC7 762 aa14.15□□□□□ -0.14
USP4-212ENST00000486549 DERL2Q9GZP9 239 aa14.15□□□□□ -0.14
USP4-212ENST00000486549 PCMTD2Q9NV79 361 aa14.15□□□□□ -0.14
USP4-212ENST00000486549 NOVA2Q9UNW9 492 aaKnown RBP14.15□□□□□ -0.14
USP4-212ENST00000486549 SH2B3Q9UQQ2 575 aa14.15□□□□□ -0.14
USP4-212ENST00000486549 OARD1Q9Y530 152 aa14.15□□□□□ -0.14
USP4-212ENST00000486549 IKBKGQ9Y6K9 419 aa14.15□□□□□ -0.14
USP4-212ENST00000486549 FER1L5A0AVI2 2057 aa14.14□□□□□ -0.15
USP4-212ENST00000486549 MDC1Q14676 2089 aaKnown RBP14.14□□□□□ -0.15
USP4-212ENST00000486549 A0A087WUV0 522 aaPredicted RBP14.14□□□□□ -0.15
USP4-212ENST00000486549 OR2A25A4D2G3 310 aa14.14□□□□□ -0.15
USP4-212ENST00000486549 NCF1BA6NI72 391 aaPredicted RBP14.14□□□□□ -0.15
USP4-212ENST00000486549 NCF1CA8MVU1 366 aaPredicted RBP14.14□□□□□ -0.15
USP4-212ENST00000486549 H3BMH7 237 aa14.14□□□□□ -0.15
USP4-212ENST00000486549 H7BY64 318 aa14.14□□□□□ -0.15
USP4-212ENST00000486549 MEN1O00255 615 aa14.14□□□□□ -0.15
USP4-212ENST00000486549 INHBAP08476 426 aa14.14□□□□□ -0.15
USP4-212ENST00000486549 HBQ1P09105 142 aa14.14□□□□□ -0.15
USP4-212ENST00000486549 SFTPCP11686 197 aa14.14□□□□□ -0.15
USP4-212ENST00000486549 NCF1P14598 390 aaPredicted RBP14.14□□□□□ -0.15
USP4-212ENST00000486549 CD1DP15813 335 aa14.14□□□□□ -0.15
USP4-212ENST00000486549 F8A1P23610 371 aa14.14□□□□□ -0.15
USP4-212ENST00000486549 PMS2P54278 862 aa14.14□□□□□ -0.15
USP4-212ENST00000486549 DNASE1L3Q13609 305 aa14.14□□□□□ -0.15
USP4-212ENST00000486549 LCN10Q6JVE6 187 aa14.14□□□□□ -0.15
USP4-212ENST00000486549 CAPN13Q6MZZ7 669 aaPredicted RBP14.14□□□□□ -0.15
USP4-212ENST00000486549 RNF44Q7L0R7 432 aa14.14□□□□□ -0.15
USP4-212ENST00000486549 TBC1D1Q86TI0 1168 aaPredicted RBP14.14□□□□□ -0.15
USP4-212ENST00000486549 PAQR7Q86WK9 346 aa14.14□□□□□ -0.15
USP4-212ENST00000486549 PLD3Q8IV08 490 aa14.14□□□□□ -0.15
USP4-212ENST00000486549 DSELQ8IZU8 1212 aa14.14□□□□□ -0.15
USP4-212ENST00000486549 TTC29Q8NA56 475 aaPredicted RBP14.14□□□□□ -0.15
USP4-212ENST00000486549 ATL1Q8WXF7 558 aa14.14□□□□□ -0.15
USP4-212ENST00000486549 STARD8Q92502 1023 aa14.14□□□□□ -0.15
USP4-212ENST00000486549 ANKRD7Q92527 254 aa14.14□□□□□ -0.15
USP4-212ENST00000486549 EXT2Q93063 718 aa14.14□□□□□ -0.15
USP4-212ENST00000486549 PRAP1Q96NZ9 151 aa14.14□□□□□ -0.15
USP4-212ENST00000486549 RUFY1Q96T51 708 aa14.14□□□□□ -0.15
USP4-212ENST00000486549 ZFYVE21Q9BQ24 234 aa14.14□□□□□ -0.15
USP4-212ENST00000486549 NDC1Q9BTX1 674 aa14.14□□□□□ -0.15
USP4-212ENST00000486549 EFHD1Q9BUP0 239 aa14.14□□□□□ -0.15
USP4-212ENST00000486549 FUT8Q9BYC5 575 aa14.14□□□□□ -0.15
USP4-212ENST00000486549 PCBD2Q9H0N5 130 aa14.14□□□□□ -0.15
USP4-212ENST00000486549 CHST8Q9H2A9 424 aa14.14□□□□□ -0.15
USP4-212ENST00000486549 TXLNGQ9NUQ3 528 aa14.14□□□□□ -0.15
USP4-212ENST00000486549 ANKMY1Q9P2S6 941 aa14.14□□□□□ -0.15
USP4-212ENST00000486549 DHCR7Q9UBM7 475 aaKnown RBP14.14□□□□□ -0.15
USP4-212ENST00000486549 NDOR1Q9UHB4 597 aa14.14□□□□□ -0.15
USP4-212ENST00000486549 SNX7Q9UNH6 387 aa14.14□□□□□ -0.15
USP4-212ENST00000486549 KLK4Q9Y5K2 254 aa14.14□□□□□ -0.15
USP4-212ENST00000486549 AP1M2Q9Y6Q5 423 aa14.14□□□□□ -0.15
USP4-212ENST00000486549 MGAQ8IWI9 3026 aa14.14□□□□□ -0.15
USP4-212ENST00000486549 LOC400499M0QZD8 3231 aa14.13□□□□□ -0.15
USP4-212ENST00000486549 LOC105369274A0A096LPK9 316 aa14.13□□□□□ -0.15
USP4-212ENST00000486549 LOC102723532A0A0G2JNH3 316 aa14.13□□□□□ -0.15
USP4-212ENST00000486549 HAT1O14929 419 aa14.13□□□□□ -0.15
USP4-212ENST00000486549 ANXA5P08758 320 aa14.13□□□□□ -0.15
USP4-212ENST00000486549 SLC35E2BP0CK96 405 aa14.13□□□□□ -0.15
USP4-212ENST00000486549 MYBL2P10244 700 aa14.13□□□□□ -0.15
USP4-212ENST00000486549 PRKAR1AP10644 381 aa14.13□□□□□ -0.15
USP4-212ENST00000486549 CCND1P24385 295 aa14.13□□□□□ -0.15
USP4-212ENST00000486549 CRABP2P29373 138 aa14.13□□□□□ -0.15
USP4-212ENST00000486549 RORAP35398 523 aa14.13□□□□□ -0.15
USP4-212ENST00000486549 MSH2P43246 934 aa14.13□□□□□ -0.15
USP4-212ENST00000486549 ATP6V0D1P61421 351 aa14.13□□□□□ -0.15
USP4-212ENST00000486549 OR4D1Q15615 310 aa14.13□□□□□ -0.15
USP4-212ENST00000486549 ZXDCQ2QGD7 858 aaPredicted RBP14.13□□□□□ -0.15
USP4-212ENST00000486549 TCTE1Q5JU00 501 aa14.13□□□□□ -0.15
USP4-212ENST00000486549 ZNF425Q6IV72 752 aa14.13□□□□□ -0.15
USP4-212ENST00000486549 C16orf46Q6P387 395 aa14.13□□□□□ -0.15
USP4-212ENST00000486549 LCTLQ6UWM7 567 aa14.13□□□□□ -0.15
USP4-212ENST00000486549 TRMT10CQ7L0Y3 403 aaKnown RBP14.13□□□□□ -0.15
USP4-212ENST00000486549 C17orf64Q86WR6 236 aa14.13□□□□□ -0.15
USP4-212ENST00000486549 OR4N4Q8N0Y3 316 aa14.13□□□□□ -0.15
USP4-212ENST00000486549 OR56A3Q8NH54 315 aa14.13□□□□□ -0.15
USP4-212ENST00000486549 SLC44A1Q8WWI5 657 aa14.13□□□□□ -0.15
USP4-212ENST00000486549 SLC45A3Q96JT2 553 aa14.13□□□□□ -0.15
USP4-212ENST00000486549 LRFN5Q96NI6 719 aa14.13□□□□□ -0.15
USP4-212ENST00000486549 SGPP1Q9BX95 441 aa14.13□□□□□ -0.15
USP4-212ENST00000486549 SNX15Q9NRS6 342 aa14.13□□□□□ -0.15
USP4-212ENST00000486549 SRPK3Q9UPE1 567 aa14.13□□□□□ -0.15
USP4-212ENST00000486549 EXOC1LA0A1B0GW35 172 aa14.12□□□□□ -0.15
USP4-212ENST00000486549 HMX2A2RU54 273 aa14.12□□□□□ -0.15
USP4-212ENST00000486549 ZNF891A8MT65 544 aaPredicted RBP14.12□□□□□ -0.15
USP4-212ENST00000486549 H0YGG7 62 aa14.12□□□□□ -0.15
USP4-212ENST00000486549 NKX2-8O15522 239 aa14.12□□□□□ -0.15
USP4-212ENST00000486549 RIPK2O43353 540 aa14.12□□□□□ -0.15
USP4-212ENST00000486549 CDH1P12830 882 aa14.12□□□□□ -0.15
USP4-212ENST00000486549 EZRP15311 586 aaKnown RBP14.12□□□□□ -0.15
USP4-212ENST00000486549 AGXTP21549 392 aa14.12□□□□□ -0.15
USP4-212ENST00000486549 ALAS2P22557 587 aa14.12□□□□□ -0.15
USP4-212ENST00000486549 SERPINB8P50452 374 aa14.12□□□□□ -0.15
USP4-212ENST00000486549 ARF3P61204 181 aaPredicted RBP14.12□□□□□ -0.15
USP4-212ENST00000486549 RPS18P62269 152 aaKnown RBP14.12□□□□□ -0.15
USP4-212ENST00000486549 IRF9Q00978 393 aa14.12□□□□□ -0.15
USP4-212ENST00000486549 DLG1Q12959 904 aa14.12□□□□□ -0.15
Retrieved 100 of 20,778 RNA–protein pairs in 33.3 ms