RNA–Protein interactions for RNA: ENST00000477935.1

VPS50-214, Transcript of VPS50, EARP/GARPII complex subunit, humanhuman

TSL 2

Gene VPS50, Length 760 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS50-214ENST00000477935 OTUD6AQ7L8S5 288 aa4.49□□□□□ -1.69
VPS50-214ENST00000477935 ZNF589Q86UQ0 364 aaPredicted RBP4.49□□□□□ -1.69
VPS50-214ENST00000477935 TICAM1Q8IUC6 712 aa4.49□□□□□ -1.69
VPS50-214ENST00000477935 DEFB119Q8N690 84 aa4.49□□□□□ -1.69
VPS50-214ENST00000477935 ALLCQ8N6M5 410 aa4.49□□□□□ -1.69
VPS50-214ENST00000477935 ZNF713Q8N859 430 aaPredicted RBP4.49□□□□□ -1.69
VPS50-214ENST00000477935 IL17RCQ8NAC3 791 aa4.49□□□□□ -1.69
VPS50-214ENST00000477935 NFKBIDQ8NI38 313 aa4.49□□□□□ -1.69
VPS50-214ENST00000477935 CRYGNQ8WXF5 182 aa4.49□□□□□ -1.69
VPS50-214ENST00000477935 RFFLQ8WZ73 363 aa4.49□□□□□ -1.69
VPS50-214ENST00000477935 CPB2Q96IY4 423 aa4.49□□□□□ -1.69
VPS50-214ENST00000477935 SLITRK1Q96PX8 696 aa4.49□□□□□ -1.69
VPS50-214ENST00000477935 MTMR9Q96QG7 549 aa4.49□□□□□ -1.69
VPS50-214ENST00000477935 POLR3CQ9BUI4 534 aaPredicted RBP4.49□□□□□ -1.69
VPS50-214ENST00000477935 PAIP1Q9H074 479 aaKnown RBP4.49□□□□□ -1.69
VPS50-214ENST00000477935 DHX33Q9H6R0 707 aaKnown RBP4.49□□□□□ -1.69
VPS50-214ENST00000477935 CNGB3Q9NQW8 809 aa4.49□□□□□ -1.69
VPS50-214ENST00000477935 SLC38A7Q9NVC3 462 aa4.49□□□□□ -1.69
VPS50-214ENST00000477935 CACNG4Q9UBN1 327 aa4.49□□□□□ -1.69
VPS50-214ENST00000477935 KCNG2Q9UJ96 466 aa4.49□□□□□ -1.69
VPS50-214ENST00000477935 FBXO9Q9UK97 447 aaPredicted RBP4.49□□□□□ -1.69
VPS50-214ENST00000477935 ICAM5Q9UMF0 924 aa4.49□□□□□ -1.69
VPS50-214ENST00000477935 ARHGAP26Q9UNA1 814 aa4.49□□□□□ -1.69
VPS50-214ENST00000477935 GTF2A1LQ9UNN4 478 aa4.49□□□□□ -1.69
VPS50-214ENST00000477935 PCDH15Q96QU1 1955 aa4.49□□□□□ -1.69
VPS50-214ENST00000477935 CACNA1DQ01668 2161 aa4.48□□□□□ -1.69
VPS50-214ENST00000477935 MTORP42345 2549 aa4.48□□□□□ -1.69
VPS50-214ENST00000477935 ICE1Q9Y2F5 2266 aa4.48□□□□□ -1.69
VPS50-214ENST00000477935 DNHD1Q96M86 4753 aa4.48□□□□□ -1.69
VPS50-214ENST00000477935 NAV3Q8IVL0 2385 aa4.48□□□□□ -1.69
VPS50-214ENST00000477935 MYH9P35579 1960 aaKnown RBP4.48□□□□□ -1.69
VPS50-214ENST00000477935 SMCO2A6NFE2 343 aa4.48□□□□□ -1.69
VPS50-214ENST00000477935 PALM2-AKAP2B1ALY0 433 aaPredicted RBP4.48□□□□□ -1.69
VPS50-214ENST00000477935 CLGNO14967 610 aa4.48□□□□□ -1.69
VPS50-214ENST00000477935 PAPSS1O43252 624 aaPredicted RBP4.48□□□□□ -1.69
VPS50-214ENST00000477935 KLF8O95600 359 aaPredicted RBP4.48□□□□□ -1.69
VPS50-214ENST00000477935 CYC1P08574 325 aa4.48□□□□□ -1.69
VPS50-214ENST00000477935 G6PDP11413 515 aa4.48□□□□□ -1.69
VPS50-214ENST00000477935 SRCP12931 536 aa4.48□□□□□ -1.69
VPS50-214ENST00000477935 MX1P20591 662 aa4.48□□□□□ -1.69
VPS50-214ENST00000477935 U2AF2P26368 475 aaKnown RBP eCLIP4.48□□□□□ -1.696e-6■■■■□ 22.5
VPS50-214ENST00000477935 OXTRP30559 389 aa4.48□□□□□ -1.69
VPS50-214ENST00000477935 NAPAP54920 295 aa4.48□□□□□ -1.69
VPS50-214ENST00000477935 POU3F1Q03052 451 aaPredicted RBP4.48□□□□□ -1.69
VPS50-214ENST00000477935 MBTD1Q05BQ5 628 aa4.48□□□□□ -1.69
VPS50-214ENST00000477935 ZNF155Q12901 538 aaPredicted RBP4.48□□□□□ -1.69
VPS50-214ENST00000477935 ILF3Q12906 894 aaKnown RBP eCLIP4.48□□□□□ -1.69
VPS50-214ENST00000477935 MTF1Q14872 753 aa4.48□□□□□ -1.69
VPS50-214ENST00000477935 UGCGQ16739 394 aa4.48□□□□□ -1.69
VPS50-214ENST00000477935 EIF2S3LQ2VIR3 472 aaKnown RBP4.48□□□□□ -1.69
VPS50-214ENST00000477935 ZNF718Q3SXZ3 478 aa4.48□□□□□ -1.69
VPS50-214ENST00000477935 ZNF672Q499Z4 452 aaPredicted RBP4.48□□□□□ -1.69
VPS50-214ENST00000477935 FAM76BQ5HYJ3 339 aa4.48□□□□□ -1.69
VPS50-214ENST00000477935 HES3Q5TGS1 186 aa4.48□□□□□ -1.69
VPS50-214ENST00000477935 HIST2H2BCQ6DN03 193 aa4.48□□□□□ -1.69
VPS50-214ENST00000477935 HIST2H2BDQ6DRA6 164 aa4.48□□□□□ -1.69
VPS50-214ENST00000477935 WBP2NLQ6ICG8 309 aa4.48□□□□□ -1.69
VPS50-214ENST00000477935 CENPPQ6IPU0 288 aa4.48□□□□□ -1.69
VPS50-214ENST00000477935 CD300LGQ6UXG3 332 aa4.48□□□□□ -1.69
VPS50-214ENST00000477935 MIER3Q7Z3K6 550 aa4.48□□□□□ -1.69
VPS50-214ENST00000477935 SLC46A3Q7Z3Q1 461 aa4.48□□□□□ -1.69
VPS50-214ENST00000477935 FOXRED2Q8IWF2 684 aa4.48□□□□□ -1.69
VPS50-214ENST00000477935 DSELQ8IZU8 1212 aa4.48□□□□□ -1.69
VPS50-214ENST00000477935 SRBD1Q8N5C6 995 aaKnown RBP4.48□□□□□ -1.69
VPS50-214ENST00000477935 SPATA22Q8NHS9 363 aa4.48□□□□□ -1.69
VPS50-214ENST00000477935 RND1Q92730 232 aa4.48□□□□□ -1.69
VPS50-214ENST00000477935 IGSF8Q969P0 613 aa4.48□□□□□ -1.69
VPS50-214ENST00000477935 TMEM143Q96AN5 459 aa4.48□□□□□ -1.69
VPS50-214ENST00000477935 MOCOSQ96EN8 888 aa4.48□□□□□ -1.69
VPS50-214ENST00000477935 CEP170P1Q96L14 293 aa4.48□□□□□ -1.69
VPS50-214ENST00000477935 NR1H4Q96RI1 486 aaPredicted RBP4.48□□□□□ -1.69
VPS50-214ENST00000477935 PKP4Q99569 1192 aa4.48□□□□□ -1.69
VPS50-214ENST00000477935 ADPGKQ9BRR6 497 aa4.48□□□□□ -1.69
VPS50-214ENST00000477935 TEKT3Q9BXF9 490 aa4.48□□□□□ -1.69
VPS50-214ENST00000477935 AGXT2Q9BYV1 514 aa4.48□□□□□ -1.69
VPS50-214ENST00000477935 ZNF224Q9NZL3 707 aa4.48□□□□□ -1.69
VPS50-214ENST00000477935 C1RLQ9NZP8 487 aa4.48□□□□□ -1.69
VPS50-214ENST00000477935 SIX4Q9UIU6 781 aa4.48□□□□□ -1.69
VPS50-214ENST00000477935 TINAGQ9UJW2 476 aa4.48□□□□□ -1.69
VPS50-214ENST00000477935 NF1P21359 2839 aa4.48□□□□□ -1.69
VPS50-214ENST00000477935 UTP20O75691 2785 aaKnown RBP4.48□□□□□ -1.69
VPS50-214ENST00000477935 PDCD11Q14690 1871 aaKnown RBP4.47□□□□□ -1.69
VPS50-214ENST00000477935 TTC36A6NLP5 189 aa4.47□□□□□ -1.69
VPS50-214ENST00000477935 MEI4A8MW99 385 aa4.47□□□□□ -1.69
VPS50-214ENST00000477935 I3L4J1 428 aa4.47□□□□□ -1.69
VPS50-214ENST00000477935 LAD1O00515 517 aa4.47□□□□□ -1.69
VPS50-214ENST00000477935 MID1O15344 667 aa4.47□□□□□ -1.69
VPS50-214ENST00000477935 CHMP2AO43633 222 aa4.47□□□□□ -1.69
VPS50-214ENST00000477935 BUB3O43684 328 aa4.47□□□□□ -1.69
VPS50-214ENST00000477935 SEC31AO94979 1220 aaKnown RBP4.47□□□□□ -1.69
VPS50-214ENST00000477935 LDOC1O95751 146 aaPredicted RBP4.47□□□□□ -1.69
VPS50-214ENST00000477935 APODP05090 189 aa4.47□□□□□ -1.69
VPS50-214ENST00000477935 GABRG2P18507 467 aa4.47□□□□□ -1.69
VPS50-214ENST00000477935 MAOAP21397 527 aa4.47□□□□□ -1.69
VPS50-214ENST00000477935 PAX3P23760 479 aa4.47□□□□□ -1.69
VPS50-214ENST00000477935 CPOXP36551 454 aa4.47□□□□□ -1.69
VPS50-214ENST00000477935 OPRD1P41143 372 aa4.47□□□□□ -1.69
VPS50-214ENST00000477935 BRCC3P46736 316 aa4.47□□□□□ -1.69
VPS50-214ENST00000477935 QARSP47897 775 aaKnown RBP4.47□□□□□ -1.69
VPS50-214ENST00000477935 DLX5P56178 289 aa4.47□□□□□ -1.69
Retrieved 100 of 20,778 RNA–protein pairs in 29.3 ms