RNA–Protein interactions for RNA: ENST00000474059.1

CCDC88A-212, Transcript of coiled-coil domain containing 88A, humanhuman

TSL 5

Gene CCDC88A, Length 541 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88A-212ENST00000474059 ZNF273Q14593 569 aa2.66□□□□□ -1.98
CCDC88A-212ENST00000474059 ALDH1L2Q3SY69 923 aa2.66□□□□□ -1.98
CCDC88A-212ENST00000474059 PRR27Q6MZM9 219 aa2.66□□□□□ -1.98
CCDC88A-212ENST00000474059 PSRC1Q6PGN9 363 aaPredicted RBP2.66□□□□□ -1.98
CCDC88A-212ENST00000474059 TRAT1Q6PIZ9 186 aa2.66□□□□□ -1.98
CCDC88A-212ENST00000474059 LINGO4Q6UY18 593 aa2.66□□□□□ -1.98
CCDC88A-212ENST00000474059 ERN2Q76MJ5 926 aaKnown RBP2.66□□□□□ -1.98
CCDC88A-212ENST00000474059 DET1Q7L5Y6 550 aa2.66□□□□□ -1.98
CCDC88A-212ENST00000474059 GALNTL5Q7Z4T8 443 aa2.66□□□□□ -1.98
CCDC88A-212ENST00000474059 ADCK2Q7Z695 626 aa2.66□□□□□ -1.98
CCDC88A-212ENST00000474059 TMPRSS11BQ86T26 416 aa2.66□□□□□ -1.98
CCDC88A-212ENST00000474059 HPS6Q86YV9 775 aa2.66□□□□□ -1.98
CCDC88A-212ENST00000474059 THNSL1Q8IYQ7 743 aa2.66□□□□□ -1.98
CCDC88A-212ENST00000474059 MAML2Q8IZL2 1156 aaPredicted RBP2.66□□□□□ -1.98
CCDC88A-212ENST00000474059 ARHGAP24Q8N264 748 aa2.66□□□□□ -1.98
CCDC88A-212ENST00000474059 ROBO4Q8WZ75 1007 aa2.66□□□□□ -1.98
CCDC88A-212ENST00000474059 SPATA17Q96L03 361 aa2.66□□□□□ -1.98
CCDC88A-212ENST00000474059 SGK494Q96LW2 274 aa2.66□□□□□ -1.98
CCDC88A-212ENST00000474059 FEVQ99581 238 aa2.66□□□□□ -1.98
CCDC88A-212ENST00000474059 CLEC7AQ9BXN2 247 aa2.66□□□□□ -1.98
CCDC88A-212ENST00000474059 ARRDC1-AS1Q9H2J1 176 aa2.66□□□□□ -1.98
CCDC88A-212ENST00000474059 PFDN4Q9NQP4 134 aa2.66□□□□□ -1.98
CCDC88A-212ENST00000474059 MRGBPQ9NV56 204 aa2.66□□□□□ -1.98
CCDC88A-212ENST00000474059 ERAP1Q9NZ08 941 aa2.66□□□□□ -1.98
CCDC88A-212ENST00000474059 STK26Q9P289 416 aa2.66□□□□□ -1.98
CCDC88A-212ENST00000474059 B3GAT1Q9P2W7 334 aa2.66□□□□□ -1.98
CCDC88A-212ENST00000474059 IGLV9-49A0A0B4J1Y8 123 aa2.65□□□□□ -1.99
CCDC88A-212ENST00000474059 NEMP2A6NFY4 417 aa2.65□□□□□ -1.99
CCDC88A-212ENST00000474059 DNM1LO00429 736 aa2.65□□□□□ -1.99
CCDC88A-212ENST00000474059 IGHV2-70P01814 119 aa2.65□□□□□ -1.99
CCDC88A-212ENST00000474059 PTPN3P26045 913 aa2.65□□□□□ -1.99
CCDC88A-212ENST00000474059 HSPA4P34932 840 aa2.65□□□□□ -1.99
CCDC88A-212ENST00000474059 GP5P40197 560 aa2.65□□□□□ -1.99
CCDC88A-212ENST00000474059 PGFP49763 221 aa2.65□□□□□ -1.99
CCDC88A-212ENST00000474059 NPY4RP50391 375 aa2.65□□□□□ -1.99
CCDC88A-212ENST00000474059 MAPK12P53778 367 aa2.65□□□□□ -1.99
CCDC88A-212ENST00000474059 HUNKP57058 714 aa2.65□□□□□ -1.99
CCDC88A-212ENST00000474059 PRKCZQ05513 592 aa2.65□□□□□ -1.99
CCDC88A-212ENST00000474059 DMPKQ09013 629 aa2.65□□□□□ -1.99
CCDC88A-212ENST00000474059 CCDC184Q52MB2 194 aa2.65□□□□□ -1.99
CCDC88A-212ENST00000474059 SYT14P1Q58G82 188 aa2.65□□□□□ -1.99
CCDC88A-212ENST00000474059 HECTD3Q5T447 861 aa2.65□□□□□ -1.99
CCDC88A-212ENST00000474059 CYP4A22Q5TCH4 519 aa2.65□□□□□ -1.99
CCDC88A-212ENST00000474059 DMKNQ6E0U4 476 aaPredicted RBP2.65□□□□□ -1.99
CCDC88A-212ENST00000474059 MFSD12Q6NUT3 480 aa2.65□□□□□ -1.99
CCDC88A-212ENST00000474059 DCLRE1AQ6PJP8 1040 aa2.65□□□□□ -1.99
CCDC88A-212ENST00000474059 PPP1R21Q6ZMI0 780 aa2.65□□□□□ -1.99
CCDC88A-212ENST00000474059 Q6ZRP5 223 aa2.65□□□□□ -1.99
CCDC88A-212ENST00000474059 DNAJB7Q7Z6W7 309 aaPredicted RBP2.65□□□□□ -1.99
CCDC88A-212ENST00000474059 GLRX5Q86SX6 157 aa2.65□□□□□ -1.99
CCDC88A-212ENST00000474059 METTL23Q86XA0 190 aa2.65□□□□□ -1.99
CCDC88A-212ENST00000474059 CCAR2Q8N163 923 aaKnown RBP2.65□□□□□ -1.99
CCDC88A-212ENST00000474059 TRIML1Q8N9V2 468 aa2.65□□□□□ -1.99
CCDC88A-212ENST00000474059 ZNF383Q8NA42 475 aa2.65□□□□□ -1.99
CCDC88A-212ENST00000474059 IQUBQ8NA54 791 aa2.65□□□□□ -1.99
CCDC88A-212ENST00000474059 OR13J1Q8NGT2 312 aa2.65□□□□□ -1.99
CCDC88A-212ENST00000474059 ZPLD1Q8TCW7 415 aa2.65□□□□□ -1.99
CCDC88A-212ENST00000474059 SSMEM1Q8WWF3 244 aa2.65□□□□□ -1.99
CCDC88A-212ENST00000474059 IRGQQ8WZA9 623 aa2.65□□□□□ -1.99
CCDC88A-212ENST00000474059 EXT2Q93063 718 aa2.65□□□□□ -1.99
CCDC88A-212ENST00000474059 SPSB1Q96BD6 273 aa2.65□□□□□ -1.99
CCDC88A-212ENST00000474059 OTUB1Q96FW1 271 aaPredicted RBP2.65□□□□□ -1.99
CCDC88A-212ENST00000474059 NSMCE3Q96MG7 304 aa2.65□□□□□ -1.99
CCDC88A-212ENST00000474059 MUS81Q96NY9 551 aa2.65□□□□□ -1.99
CCDC88A-212ENST00000474059 GBP5Q96PP8 586 aa2.65□□□□□ -1.99
CCDC88A-212ENST00000474059 USP28Q96RU2 1077 aa2.65□□□□□ -1.99
CCDC88A-212ENST00000474059 MYADMQ96S97 322 aa2.65□□□□□ -1.99
CCDC88A-212ENST00000474059 CPNE1Q99829 537 aa2.65□□□□□ -1.99
CCDC88A-212ENST00000474059 ADPGKQ9BRR6 497 aa2.65□□□□□ -1.99
CCDC88A-212ENST00000474059 TRAF4Q9BUZ4 470 aaPredicted RBP2.65□□□□□ -1.99
CCDC88A-212ENST00000474059 LCE3DQ9BYE3 92 aa2.65□□□□□ -1.99
CCDC88A-212ENST00000474059 FZD8Q9H461 694 aa2.65□□□□□ -1.99
CCDC88A-212ENST00000474059 SERINC1Q9NRX5 453 aa2.65□□□□□ -1.99
CCDC88A-212ENST00000474059 CHCHD3Q9NX63 227 aaKnown RBP2.65□□□□□ -1.99
CCDC88A-212ENST00000474059 MTUS1Q9ULD2 1270 aa2.65□□□□□ -1.99
CCDC88A-212ENST00000474059 PCDH11YQ9BZA8 1340 aa2.65□□□□□ -1.99
CCDC88A-212ENST00000474059 A0A1W2PRB8 838 aa2.64□□□□□ -1.99
CCDC88A-212ENST00000474059 ANXA2P2A6NMY6 339 aa2.64□□□□□ -1.99
CCDC88A-212ENST00000474059 CCDC188H7C350 402 aa2.64□□□□□ -1.99
CCDC88A-212ENST00000474059 CLDN4O14493 209 aa2.64□□□□□ -1.99
CCDC88A-212ENST00000474059 GAPDHSO14556 408 aaPredicted RBP2.64□□□□□ -1.99
CCDC88A-212ENST00000474059 ACSL3O95573 720 aa2.64□□□□□ -1.99
CCDC88A-212ENST00000474059 CD22P20273 847 aa2.64□□□□□ -1.99
CCDC88A-212ENST00000474059 EEF1B2P24534 225 aaKnown RBP2.64□□□□□ -1.99
CCDC88A-212ENST00000474059 SLC6A6P31641 620 aa2.64□□□□□ -1.99
CCDC88A-212ENST00000474059 LHX1P48742 406 aa2.64□□□□□ -1.99
CCDC88A-212ENST00000474059 ASCL1P50553 236 aa2.64□□□□□ -1.99
CCDC88A-212ENST00000474059 HERV-K104P61576 105 aa2.64□□□□□ -1.99
CCDC88A-212ENST00000474059 CX3CL1P78423 397 aa2.64□□□□□ -1.99
CCDC88A-212ENST00000474059 MAT1AQ00266 395 aaKnown RBP2.64□□□□□ -1.99
CCDC88A-212ENST00000474059 MZT1Q08AG7 82 aa2.64□□□□□ -1.99
CCDC88A-212ENST00000474059 NFATC2Q13469 925 aa2.64□□□□□ -1.99
CCDC88A-212ENST00000474059 DRP2Q13474 957 aa2.64□□□□□ -1.99
CCDC88A-212ENST00000474059 SCARB2Q14108 478 aa2.64□□□□□ -1.99
CCDC88A-212ENST00000474059 NECTIN1Q15223 517 aa2.64□□□□□ -1.99
CCDC88A-212ENST00000474059 HLA-BQ31612 363 aa2.64□□□□□ -1.99
CCDC88A-212ENST00000474059 PHLDA2Q53GA4 152 aa2.64□□□□□ -1.99
CCDC88A-212ENST00000474059 TAF1BQ53T94 588 aaPredicted RBP2.64□□□□□ -1.99
CCDC88A-212ENST00000474059 C6orf136Q5SQH8 315 aa2.64□□□□□ -1.99
CCDC88A-212ENST00000474059 CAVIN1Q6NZI2 390 aaKnown RBP2.64□□□□□ -1.99
Retrieved 100 of 20,778 RNA–protein pairs in 25.9 ms