RNA–Protein interactions for RNA: ENST00000473829.1

PTCD3-210, Transcript of pentatricopeptide repeat domain 3, humanhuman

TSL 3

Gene PTCD3, Length 587 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTCD3-210ENST00000473829 ARL15Q9NXU5 204 aa18.13■□□□□ 0.49
PTCD3-210ENST00000473829 UTP6Q9NYH9 597 aaKnown RBP18.13■□□□□ 0.49
PTCD3-210ENST00000473829 ANKMY1Q9P2S6 941 aa18.13■□□□□ 0.49
PTCD3-210ENST00000473829 MTRF1LQ9UGC7 380 aaKnown RBP18.13■□□□□ 0.49
PTCD3-210ENST00000473829 SRPK3Q9UPE1 567 aa18.13■□□□□ 0.49
PTCD3-210ENST00000473829 CCNDBP1O95273 360 aa18.12■□□□□ 0.49
PTCD3-210ENST00000473829 GUCA1CO95843 209 aa18.12■□□□□ 0.49
PTCD3-210ENST00000473829 ITGB2P05107 769 aa18.12■□□□□ 0.49
PTCD3-210ENST00000473829 ENO2P09104 434 aaPredicted RBP18.12■□□□□ 0.49
PTCD3-210ENST00000473829 HIST1H2AGP0C0S8 130 aaPredicted RBP18.12■□□□□ 0.49
PTCD3-210ENST00000473829 ATXN8OSP0DMR3 200 aa18.12■□□□□ 0.49
PTCD3-210ENST00000473829 HIST1H2ADP20671 130 aa18.12■□□□□ 0.49
PTCD3-210ENST00000473829 ITGAXP20702 1163 aa18.12■□□□□ 0.49
PTCD3-210ENST00000473829 PTPN4P29074 926 aa18.12■□□□□ 0.49
PTCD3-210ENST00000473829 SLC12A2P55011 1212 aa18.12■□□□□ 0.49
PTCD3-210ENST00000473829 AP1S2P56377 157 aa18.12■□□□□ 0.49
PTCD3-210ENST00000473829 ABATP80404 500 aa18.12■□□□□ 0.49
PTCD3-210ENST00000473829 ILF2Q12905 390 aaKnown RBP18.12■□□□□ 0.49
PTCD3-210ENST00000473829 NAE1Q13564 534 aa18.12■□□□□ 0.49
PTCD3-210ENST00000473829 IL10RAQ13651 578 aa18.12■□□□□ 0.49
PTCD3-210ENST00000473829 LY6DQ14210 128 aa18.12■□□□□ 0.49
PTCD3-210ENST00000473829 ERV3-1Q14264 604 aa18.12■□□□□ 0.49
PTCD3-210ENST00000473829 NAA25Q14CX7 972 aa18.12■□□□□ 0.49
PTCD3-210ENST00000473829 ZKSCAN8Q15776 578 aaPredicted RBP18.12■□□□□ 0.49
PTCD3-210ENST00000473829 CRTC2Q53ET0 693 aaPredicted RBP18.12■□□□□ 0.49
PTCD3-210ENST00000473829 TAF1BQ53T94 588 aaPredicted RBP18.12■□□□□ 0.49
PTCD3-210ENST00000473829 GRTP1Q5TC63 336 aa18.12■□□□□ 0.49
PTCD3-210ENST00000473829 PLD3Q8IV08 490 aa18.12■□□□□ 0.49
PTCD3-210ENST00000473829 SPATA6LQ8N4H0 392 aa18.12■□□□□ 0.49
PTCD3-210ENST00000473829 ALKBH8Q96BT7 664 aaKnown RBP18.12■□□□□ 0.49
PTCD3-210ENST00000473829 PYCR2Q96C36 320 aa18.12■□□□□ 0.49
PTCD3-210ENST00000473829 FBXL8Q96CD0 374 aa18.12■□□□□ 0.49
PTCD3-210ENST00000473829 HIST1H2AHQ96KK5 128 aa18.12■□□□□ 0.49
PTCD3-210ENST00000473829 HIST1H2AJQ99878 128 aa18.12■□□□□ 0.49
PTCD3-210ENST00000473829 ZFYVE21Q9BQ24 234 aa18.12■□□□□ 0.49
PTCD3-210ENST00000473829 H2AFJQ9BTM1 129 aa18.12■□□□□ 0.49
PTCD3-210ENST00000473829 NDC1Q9BTX1 674 aa18.12■□□□□ 0.49
PTCD3-210ENST00000473829 SGPP1Q9BX95 441 aa18.12■□□□□ 0.49
PTCD3-210ENST00000473829 GPR87Q9BY21 358 aa18.12■□□□□ 0.49
PTCD3-210ENST00000473829 SEMA4CQ9C0C4 833 aa18.12■□□□□ 0.49
PTCD3-210ENST00000473829 FARSAQ9Y285 508 aaKnown RBP18.12■□□□□ 0.49
PTCD3-210ENST00000473829 BSNQ9UPA5 3926 aa18.12■□□□□ 0.49
PTCD3-210ENST00000473829 KALRNO60229 2985 aa18.12■□□□□ 0.49
PTCD3-210ENST00000473829 BOD1L1Q8NFC6 3051 aa18.12■□□□□ 0.49
PTCD3-210ENST00000473829 PCSK5Q92824 1860 aa18.12■□□□□ 0.49
PTCD3-210ENST00000473829 CCDC88CQ9P219 2028 aa18.11■□□□□ 0.49
PTCD3-210ENST00000473829 FITM1A5D6W6 292 aa18.11■□□□□ 0.49
PTCD3-210ENST00000473829 HAT1O14929 419 aa18.11■□□□□ 0.49
PTCD3-210ENST00000473829 PRB1P04280 392 aa18.11■□□□□ 0.49
PTCD3-210ENST00000473829 SPRP35270 261 aaPredicted RBP18.11■□□□□ 0.49
PTCD3-210ENST00000473829 RPS15P62841 145 aaKnown RBP18.11■□□□□ 0.49
PTCD3-210ENST00000473829 MC1RQ01726 317 aa18.11■□□□□ 0.49
PTCD3-210ENST00000473829 NAB1Q13506 487 aa18.11■□□□□ 0.49
PTCD3-210ENST00000473829 SLC9A5Q14940 896 aa18.11■□□□□ 0.49
PTCD3-210ENST00000473829 NCF4Q15080 339 aa18.11■□□□□ 0.49
PTCD3-210ENST00000473829 TSNQ15631 228 aaKnown RBP18.11■□□□□ 0.49
PTCD3-210ENST00000473829 TCTE1Q5JU00 501 aa18.11■□□□□ 0.49
PTCD3-210ENST00000473829 WASHC2DQ5SRD0 308 aa18.11■□□□□ 0.49
PTCD3-210ENST00000473829 CMC1Q7Z7K0 106 aa18.11■□□□□ 0.49
PTCD3-210ENST00000473829 EXD3Q8N9H8 876 aa18.11■□□□□ 0.49
PTCD3-210ENST00000473829 OR56A3Q8NH54 315 aa18.11■□□□□ 0.49
PTCD3-210ENST00000473829 PROKR1Q8TCW9 393 aa18.11■□□□□ 0.49
PTCD3-210ENST00000473829 SLC39A7Q92504 469 aa18.11■□□□□ 0.49
PTCD3-210ENST00000473829 ANKRD7Q92527 254 aa18.11■□□□□ 0.49
PTCD3-210ENST00000473829 MRRFQ96E11 262 aaKnown RBP18.11■□□□□ 0.49
PTCD3-210ENST00000473829 OR4K3Q96R72 315 aa18.11■□□□□ 0.49
PTCD3-210ENST00000473829 NLNQ9BYT8 704 aa18.11■□□□□ 0.49
PTCD3-210ENST00000473829 SLC22A11Q9NSA0 550 aa18.11■□□□□ 0.49
PTCD3-210ENST00000473829 NOVA2Q9UNW9 492 aaKnown RBP18.11■□□□□ 0.49
PTCD3-210ENST00000473829 PIEZO2Q9H5I5 2752 aa18.1■□□□□ 0.49
PTCD3-210ENST00000473829 CDC14CA4D256 554 aa18.1■□□□□ 0.49
PTCD3-210ENST00000473829 H0YGG7 62 aa18.1■□□□□ 0.49
PTCD3-210ENST00000473829 H7BY64 318 aa18.1■□□□□ 0.49
PTCD3-210ENST00000473829 SRPX2O60687 465 aaPredicted RBP18.1■□□□□ 0.49
PTCD3-210ENST00000473829 CNOT3O75175 753 aaKnown RBP18.1■□□□□ 0.49
PTCD3-210ENST00000473829 ACSL3O95573 720 aa18.1■□□□□ 0.49
PTCD3-210ENST00000473829 RAB40ALP0C0E4 278 aa18.1■□□□□ 0.49
PTCD3-210ENST00000473829 RHOXF2BP0C7M4 288 aa18.1■□□□□ 0.49
PTCD3-210ENST00000473829 FAM87AP0C7U9 286 aa18.1■□□□□ 0.49
PTCD3-210ENST00000473829 EZRP15311 586 aaKnown RBP18.1■□□□□ 0.49
PTCD3-210ENST00000473829 STMN1P16949 149 aa18.1■□□□□ 0.49
PTCD3-210ENST00000473829 FOXL2P58012 376 aa18.1■□□□□ 0.49
PTCD3-210ENST00000473829 ARF3P61204 181 aaPredicted RBP18.1■□□□□ 0.49
PTCD3-210ENST00000473829 GRM7Q14831 915 aa18.1■□□□□ 0.49
PTCD3-210ENST00000473829 SLMAPQ14BN4 828 aa18.1■□□□□ 0.49
PTCD3-210ENST00000473829 DEFB109BQ30KR1 87 aa18.1■□□□□ 0.49
PTCD3-210ENST00000473829 TTLL10Q6ZVT0 673 aa18.1■□□□□ 0.49
PTCD3-210ENST00000473829 ADCK2Q7Z695 626 aa18.1■□□□□ 0.49
PTCD3-210ENST00000473829 TMEM151BQ8IW70 566 aa18.1■□□□□ 0.49
PTCD3-210ENST00000473829 TSPAN17Q96FV3 270 aa18.1■□□□□ 0.49
PTCD3-210ENST00000473829 WBP1Q96G27 269 aa18.1■□□□□ 0.49
PTCD3-210ENST00000473829 PRAP1Q96NZ9 151 aa18.1■□□□□ 0.49
PTCD3-210ENST00000473829 OR2A5Q96R48 311 aa18.1■□□□□ 0.49
PTCD3-210ENST00000473829 DPH2Q9BQC3 489 aaPredicted RBP18.1■□□□□ 0.49
PTCD3-210ENST00000473829 RHOXF2Q9BQY4 288 aa18.1■□□□□ 0.49
PTCD3-210ENST00000473829 TRIM54Q9BYV2 358 aa18.1■□□□□ 0.49
PTCD3-210ENST00000473829 DERL2Q9GZP9 239 aa18.1■□□□□ 0.49
PTCD3-210ENST00000473829 ACSS3Q9H6R3 686 aa18.1■□□□□ 0.49
PTCD3-210ENST00000473829 CUTCQ9NTM9 273 aa18.1■□□□□ 0.49
PTCD3-210ENST00000473829 TXLNGQ9NUQ3 528 aa18.1■□□□□ 0.49
Retrieved 100 of 20,778 RNA–protein pairs in 31.6 ms