RNA–Protein interactions for RNA: ENST00000472044.1

PTCD3-209, Transcript of pentatricopeptide repeat domain 3, human

TSL 3

Gene PTCD3, Length 293 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

Download Table

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
PTCD3-209	ENST00000472044	SLCO1B7	G3V0H7	640 aa		3.42	□□□□□ -1.86
PTCD3-209	ENST00000472044	PRAF2	O60831	178 aa		3.42	□□□□□ -1.86
PTCD3-209	ENST00000472044	DDHD2	O94830	711 aa		3.42	□□□□□ -1.86
PTCD3-209	ENST00000472044	MAGEA11	P43364	429 aa		3.42	□□□□□ -1.86
PTCD3-209	ENST00000472044	NKX2-1	P43699	371 aa	Predicted RBP	3.42	□□□□□ -1.86
PTCD3-209	ENST00000472044	GLIPR1	P48060	266 aa		3.42	□□□□□ -1.86
PTCD3-209	ENST00000472044	CDR2	Q01850	454 aa		3.42	□□□□□ -1.86
PTCD3-209	ENST00000472044	GCNT1	Q02742	428 aa		3.42	□□□□□ -1.86
PTCD3-209	ENST00000472044	SULT2A1	Q06520	285 aa		3.42	□□□□□ -1.86
PTCD3-209	ENST00000472044	PTK6	Q13882	451 aa		3.42	□□□□□ -1.86
PTCD3-209	ENST00000472044	RRS1	Q15050	365 aa	Known RBP	3.42	□□□□□ -1.86
PTCD3-209	ENST00000472044	TYSND1	Q2T9J0	566 aa		3.42	□□□□□ -1.86
PTCD3-209	ENST00000472044	CCDC184	Q52MB2	194 aa		3.42	□□□□□ -1.86
PTCD3-209	ENST00000472044	LBH	Q53QV2	105 aa	Predicted RBP	3.42	□□□□□ -1.86
PTCD3-209	ENST00000472044	C1QTNF12	Q5T7M4	302 aa		3.42	□□□□□ -1.86
PTCD3-209	ENST00000472044	ARHGAP17	Q68EM7	881 aa		3.42	□□□□□ -1.86
PTCD3-209	ENST00000472044	ZNF790	Q6PG37	636 aa		3.42	□□□□□ -1.86
PTCD3-209	ENST00000472044	PSRC1	Q6PGN9	363 aa	Predicted RBP	3.42	□□□□□ -1.86
PTCD3-209	ENST00000472044	C15orf39	Q6ZRI6	1047 aa		3.42	□□□□□ -1.86
PTCD3-209	ENST00000472044	SH2D5	Q6ZV89	423 aa		3.42	□□□□□ -1.86
PTCD3-209	ENST00000472044	USP43	Q70EL4	1123 aa		3.42	□□□□□ -1.86
PTCD3-209	ENST00000472044	OR13C3	Q8NGS6	347 aa		3.42	□□□□□ -1.86
PTCD3-209	ENST00000472044	FAM76A	Q8TAV0	307 aa		3.42	□□□□□ -1.86
PTCD3-209	ENST00000472044	SLC26A7	Q8TE54	656 aa		3.42	□□□□□ -1.86
PTCD3-209	ENST00000472044	ST6GALNAC6	Q969X2	333 aa		3.42	□□□□□ -1.86
PTCD3-209	ENST00000472044	LGALS12	Q96DT0	336 aa		3.42	□□□□□ -1.86
PTCD3-209	ENST00000472044	GDAP1L1	Q96MZ0	367 aa		3.42	□□□□□ -1.86
PTCD3-209	ENST00000472044	DUX3	Q96PT4	197 aa		3.42	□□□□□ -1.86
PTCD3-209	ENST00000472044	PARK7	Q99497	189 aa	Known RBP	3.42	□□□□□ -1.86
PTCD3-209	ENST00000472044	SDCBP2	Q9H190	292 aa		3.42	□□□□□ -1.86
PTCD3-209	ENST00000472044	SNX25	Q9H3E2	840 aa		3.42	□□□□□ -1.86
PTCD3-209	ENST00000472044	COPS7B	Q9H9Q2	264 aa	Predicted RBP	3.42	□□□□□ -1.86
PTCD3-209	ENST00000472044	LIPT1	Q9Y234	373 aa		3.42	□□□□□ -1.86
PTCD3-209	ENST00000472044	CHKB	Q9Y259	395 aa		3.42	□□□□□ -1.86
PTCD3-209	ENST00000472044	KCNK7	Q9Y2U2	307 aa		3.42	□□□□□ -1.86
PTCD3-209	ENST00000472044	ZFP37	Q9Y6Q3	630 aa	Predicted RBP	3.42	□□□□□ -1.86
PTCD3-209	ENST00000472044	MYH15	Q9Y2K3	1946 aa		3.41	□□□□□ -1.86
PTCD3-209	ENST00000472044		A0A087WYN8	130 aa		3.41	□□□□□ -1.86
PTCD3-209	ENST00000472044	TRBV5-5	A0A0J9YX44	114 aa		3.41	□□□□□ -1.86
PTCD3-209	ENST00000472044	ZNF197	O14709	1029 aa		3.41	□□□□□ -1.86
PTCD3-209	ENST00000472044	FLRT2	O43155	660 aa		3.41	□□□□□ -1.86
PTCD3-209	ENST00000472044	SELENOF	O60613	162 aa		3.41	□□□□□ -1.86
PTCD3-209	ENST00000472044	SLU7	O95391	586 aa	Known RBP	3.41	□□□□□ -1.86
PTCD3-209	ENST00000472044	AMBP	P02760	352 aa		3.41	□□□□□ -1.86
PTCD3-209	ENST00000472044	VTN	P04004	478 aa		3.41	□□□□□ -1.86
PTCD3-209	ENST00000472044	SUPT20HL2	P0C7V6	817 aa		3.41	□□□□□ -1.86
PTCD3-209	ENST00000472044	GNB3	P16520	340 aa		3.41	□□□□□ -1.86
PTCD3-209	ENST00000472044	MUT	P22033	750 aa		3.41	□□□□□ -1.86
PTCD3-209	ENST00000472044	PSMB4	P28070	264 aa		3.41	□□□□□ -1.86
PTCD3-209	ENST00000472044	ALDH4A1	P30038	563 aa		3.41	□□□□□ -1.86
PTCD3-209	ENST00000472044	CHRNB4	P30926	498 aa		3.41	□□□□□ -1.86
PTCD3-209	ENST00000472044	CTNNA1	P35221	906 aa	Known RBP	3.41	□□□□□ -1.86
PTCD3-209	ENST00000472044	SOAT1	P35610	550 aa		3.41	□□□□□ -1.86
PTCD3-209	ENST00000472044	TNNT3	P45378	269 aa	Predicted RBP	3.41	□□□□□ -1.86
PTCD3-209	ENST00000472044	GNB1	P62873	340 aa		3.41	□□□□□ -1.86
PTCD3-209	ENST00000472044	SQLE	Q14534	574 aa		3.41	□□□□□ -1.86
PTCD3-209	ENST00000472044	NONO	Q15233	471 aa	Known RBP eCLIP	3.41	□□□□□ -1.86
PTCD3-209	ENST00000472044	RBBP7	Q16576	425 aa		3.41	□□□□□ -1.86
PTCD3-209	ENST00000472044	SLC25A53	Q5H9E4	307 aa		3.41	□□□□□ -1.86
PTCD3-209	ENST00000472044	NHSL2	Q5HYW2	709 aa		3.41	□□□□□ -1.86
PTCD3-209	ENST00000472044	LCN1P1	Q5VSP4	162 aa		3.41	□□□□□ -1.86
PTCD3-209	ENST00000472044	FAM166A	Q6J272	317 aa		3.41	□□□□□ -1.86
PTCD3-209	ENST00000472044	LINC00696	Q6ZRV3	163 aa		3.41	□□□□□ -1.86
PTCD3-209	ENST00000472044	GPR141	Q7Z602	305 aa		3.41	□□□□□ -1.86
PTCD3-209	ENST00000472044	LSMEM2	Q8N112	164 aa		3.41	□□□□□ -1.86
PTCD3-209	ENST00000472044	NHLRC2	Q8NBF2	726 aa		3.41	□□□□□ -1.86
PTCD3-209	ENST00000472044	ATAD1	Q8NBU5	361 aa		3.41	□□□□□ -1.86
PTCD3-209	ENST00000472044	OR2T11	Q8NH01	316 aa		3.41	□□□□□ -1.86
PTCD3-209	ENST00000472044	OR4C3	Q8NH37	302 aa		3.41	□□□□□ -1.86
PTCD3-209	ENST00000472044	GDAP1	Q8TB36	358 aa		3.41	□□□□□ -1.86
PTCD3-209	ENST00000472044	RIT1	Q92963	219 aa		3.41	□□□□□ -1.86
PTCD3-209	ENST00000472044	C4orf45	Q96LM5	186 aa		3.41	□□□□□ -1.86
PTCD3-209	ENST00000472044	AK8	Q96MA6	479 aa		3.41	□□□□□ -1.86
PTCD3-209	ENST00000472044	NDN	Q99608	321 aa		3.41	□□□□□ -1.86
PTCD3-209	ENST00000472044	CDCA3	Q99618	268 aa	Predicted RBP	3.41	□□□□□ -1.86
PTCD3-209	ENST00000472044	CCDC3	Q9BQI4	270 aa		3.41	□□□□□ -1.86
PTCD3-209	ENST00000472044	THAP2	Q9H0W7	228 aa		3.41	□□□□□ -1.86
PTCD3-209	ENST00000472044	C2orf40	Q9H1Z8	148 aa		3.41	□□□□□ -1.86
PTCD3-209	ENST00000472044	MINDY3	Q9H8M7	445 aa		3.41	□□□□□ -1.86
PTCD3-209	ENST00000472044	DDX43	Q9NXZ2	648 aa	Known RBP	3.41	□□□□□ -1.86
PTCD3-209	ENST00000472044	PKD2L2	Q9NZM6	624 aa		3.41	□□□□□ -1.86
PTCD3-209	ENST00000472044	OR6C2	Q9NZP2	312 aa		3.41	□□□□□ -1.86
PTCD3-209	ENST00000472044	VPS18	Q9P253	973 aa		3.41	□□□□□ -1.86
PTCD3-209	ENST00000472044	ITGA11	Q9UKX5	1188 aa		3.41	□□□□□ -1.86
PTCD3-209	ENST00000472044	TNN	Q9UQP3	1299 aa		3.41	□□□□□ -1.86
PTCD3-209	ENST00000472044	STK36	Q9NRP7	1315 aa		3.41	□□□□□ -1.86
PTCD3-209	ENST00000472044	IGHV4-4	A0A075B6R2	117 aa		3.4	□□□□□ -1.87
PTCD3-209	ENST00000472044	YDJC	A8MPS7	323 aa		3.4	□□□□□ -1.87
PTCD3-209	ENST00000472044	C17orf105	B2RV13	164 aa		3.4	□□□□□ -1.87
PTCD3-209	ENST00000472044	TMEM150C	B9EJG8	249 aa		3.4	□□□□□ -1.87
PTCD3-209	ENST00000472044		F8VVB4	439 aa		3.4	□□□□□ -1.87
PTCD3-209	ENST00000472044		F8VWA3	439 aa		3.4	□□□□□ -1.87
PTCD3-209	ENST00000472044	EPHB6	O15197	1021 aa		3.4	□□□□□ -1.87
PTCD3-209	ENST00000472044	PPIP5K2	O43314	1243 aa		3.4	□□□□□ -1.87
PTCD3-209	ENST00000472044	BAG3	O95817	575 aa		3.4	□□□□□ -1.87
PTCD3-209	ENST00000472044	PLG	P00747	810 aa	Predicted RBP	3.4	□□□□□ -1.87
PTCD3-209	ENST00000472044	SERPING1	P05155	500 aa		3.4	□□□□□ -1.87
PTCD3-209	ENST00000472044	CEACAM1	P13688	526 aa		3.4	□□□□□ -1.87
PTCD3-209	ENST00000472044	CD59	P13987	128 aa		3.4	□□□□□ -1.87
PTCD3-209	ENST00000472044	DARS	P14868	501 aa	Known RBP	3.4	□□□□□ -1.87

Retrieved 100 of 20,778 RNA–protein pairs in 45.5 ms