RNA–Protein interactions for RNA: ENST00000469511.1

PTPN4-209, Transcript of protein tyrosine phosphatase, non-receptor type 4, humanhuman

TSL 3

Gene PTPN4, Length 476 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPN4-209ENST00000469511 PMPCBO75439 489 aa5.02□□□□□ -1.61
PTPN4-209ENST00000469511 PRAMEF1O95521 474 aa5.02□□□□□ -1.61
PTPN4-209ENST00000469511 H2AFB1P0C5Y9 115 aa5.02□□□□□ -1.61
PTPN4-209ENST00000469511 H2AFB2P0C5Z0 115 aa5.02□□□□□ -1.61
PTPN4-209ENST00000469511 SLC35G4P0C7Q5 338 aa5.02□□□□□ -1.61
PTPN4-209ENST00000469511 PRSS56P0CW18 603 aa5.02□□□□□ -1.61
PTPN4-209ENST00000469511 PCSK6P29122 969 aa5.02□□□□□ -1.61
PTPN4-209ENST00000469511 ADMP35318 185 aa5.02□□□□□ -1.61
PTPN4-209ENST00000469511 GJC1P36383 396 aa5.02□□□□□ -1.61
PTPN4-209ENST00000469511 CDKN1CP49918 316 aaPredicted RBP5.02□□□□□ -1.61
PTPN4-209ENST00000469511 YBX1P67809 324 aaKnown RBP5.02□□□□□ -1.61
PTPN4-209ENST00000469511 DPYSL3Q14195 570 aa5.02□□□□□ -1.61
PTPN4-209ENST00000469511 KRT33BQ14525 404 aa5.02□□□□□ -1.61
PTPN4-209ENST00000469511 SYCP1Q15431 976 aa5.02□□□□□ -1.61
PTPN4-209ENST00000469511 IFI16Q16666 785 aaKnown RBP5.02□□□□□ -1.61
PTPN4-209ENST00000469511 TFDP3Q5H9I0 405 aa5.02□□□□□ -1.61
PTPN4-209ENST00000469511 TCP11X2Q5H9J9 407 aa5.02□□□□□ -1.61
PTPN4-209ENST00000469511 IRAK1BP1Q5VVH5 260 aa5.02□□□□□ -1.61
PTPN4-209ENST00000469511 TLDC1Q6P9B6 456 aa5.02□□□□□ -1.61
PTPN4-209ENST00000469511 NPNTQ6UXI9 565 aa5.02□□□□□ -1.61
PTPN4-209ENST00000469511 NAPRTQ6XQN6 538 aa5.02□□□□□ -1.61
PTPN4-209ENST00000469511 NEK10Q6ZWH5 1172 aa5.02□□□□□ -1.61
PTPN4-209ENST00000469511 AMIGO1Q86WK6 493 aa5.02□□□□□ -1.61
PTPN4-209ENST00000469511 TMTC1Q8IUR5 882 aa5.02□□□□□ -1.61
PTPN4-209ENST00000469511 PSTKQ8IV42 348 aaKnown RBP5.02□□□□□ -1.61
PTPN4-209ENST00000469511 SIAH3Q8IW03 269 aa5.02□□□□□ -1.61
PTPN4-209ENST00000469511 KBTBD2Q8IY47 623 aa5.02□□□□□ -1.61
PTPN4-209ENST00000469511 CIARTQ8N365 385 aaPredicted RBP5.02□□□□□ -1.61
PTPN4-209ENST00000469511 SLC25A41Q8N5S1 370 aa5.02□□□□□ -1.61
PTPN4-209ENST00000469511 C2orf73Q8N5S3 287 aaPredicted RBP5.02□□□□□ -1.61
PTPN4-209ENST00000469511 CHDHQ8NE62 594 aaPredicted RBP5.02□□□□□ -1.61
PTPN4-209ENST00000469511 DDHD1Q8NEL9 900 aa5.02□□□□□ -1.61
PTPN4-209ENST00000469511 OR5AR1Q8NGP9 310 aa5.02□□□□□ -1.61
PTPN4-209ENST00000469511 SPATA3Q8NHX4 192 aa5.02□□□□□ -1.61
PTPN4-209ENST00000469511 STT3BQ8TCJ2 826 aa5.02□□□□□ -1.61
PTPN4-209ENST00000469511 ZNF398Q8TD17 642 aa5.02□□□□□ -1.61
PTPN4-209ENST00000469511 BRSK1Q8TDC3 778 aa5.02□□□□□ -1.61
PTPN4-209ENST00000469511 CA5BP1Q8WTZ4 195 aa5.02□□□□□ -1.61
PTPN4-209ENST00000469511 N4BP2L2Q92802 583 aaPredicted RBP5.02□□□□□ -1.61
PTPN4-209ENST00000469511 IMP4Q96G21 291 aaKnown RBP5.02□□□□□ -1.61
PTPN4-209ENST00000469511 PWWP2AQ96N64 755 aa5.02□□□□□ -1.61
PTPN4-209ENST00000469511 NPAS2Q99743 824 aa5.02□□□□□ -1.61
PTPN4-209ENST00000469511 ZNF559Q9BR84 538 aa5.02□□□□□ -1.61
PTPN4-209ENST00000469511 TRIM51Q9BSJ1 452 aa5.02□□□□□ -1.61
PTPN4-209ENST00000469511 CRB3Q9BUF7 120 aa5.02□□□□□ -1.61
PTPN4-209ENST00000469511 SLC26A1Q9H2B4 701 aa5.02□□□□□ -1.61
PTPN4-209ENST00000469511 SYNPO2LQ9H987 977 aa5.02□□□□□ -1.61
PTPN4-209ENST00000469511 PARVAQ9NVD7 372 aa5.02□□□□□ -1.61
PTPN4-209ENST00000469511 IRAK4Q9NWZ3 460 aa5.02□□□□□ -1.61
PTPN4-209ENST00000469511 EURLQ9NYK6 297 aa5.02□□□□□ -1.61
PTPN4-209ENST00000469511 RNF6Q9Y252 685 aa5.02□□□□□ -1.61
PTPN4-209ENST00000469511 MRPS2Q9Y399 296 aaKnown RBP5.02□□□□□ -1.61
PTPN4-209ENST00000469511 AP1M2Q9Y6Q5 423 aa5.02□□□□□ -1.61
PTPN4-209ENST00000469511 COLEC10Q9Y6Z7 277 aa5.02□□□□□ -1.61
PTPN4-209ENST00000469511 ZANQ9Y493 2812 aa5.02□□□□□ -1.61
PTPN4-209ENST00000469511 NCKAP5O14513 1909 aa5.01□□□□□ -1.61
PTPN4-209ENST00000469511 IGHV3-20A0A0C4DH32 117 aa5.01□□□□□ -1.61
PTPN4-209ENST00000469511 GLYATL1P3A0A0U1RQE8 302 aa5.01□□□□□ -1.61
PTPN4-209ENST00000469511 A0A1B0GX78 115 aa5.01□□□□□ -1.61
PTPN4-209ENST00000469511 OR5H15A6NDH6 313 aa5.01□□□□□ -1.61
PTPN4-209ENST00000469511 OR2W5A6NFC9 320 aa5.01□□□□□ -1.61
PTPN4-209ENST00000469511 MATN2O00339 956 aa5.01□□□□□ -1.61
PTPN4-209ENST00000469511 DDX3XO00571 662 aaKnown RBP eCLIP5.01□□□□□ -1.61
PTPN4-209ENST00000469511 DSCR3O14972 297 aa5.01□□□□□ -1.61
PTPN4-209ENST00000469511 GSC2O15499 205 aa5.01□□□□□ -1.61
PTPN4-209ENST00000469511 ASNA1O43681 348 aa5.01□□□□□ -1.61
PTPN4-209ENST00000469511 SUSD5O60279 629 aa5.01□□□□□ -1.61
PTPN4-209ENST00000469511 CTAG2O75638 210 aa5.01□□□□□ -1.61
PTPN4-209ENST00000469511 NDST3O95803 873 aa5.01□□□□□ -1.61
PTPN4-209ENST00000469511 CRYABP02511 175 aaKnown RBP5.01□□□□□ -1.61
PTPN4-209ENST00000469511 FTLP02792 175 aaPredicted RBP5.01□□□□□ -1.61
PTPN4-209ENST00000469511 TPOP07202 933 aa5.01□□□□□ -1.61
PTPN4-209ENST00000469511 CHRM5P08912 532 aaPredicted RBP5.01□□□□□ -1.61
PTPN4-209ENST00000469511 ZGLP1P0C6A0 271 aa5.01□□□□□ -1.61
PTPN4-209ENST00000469511 NAT2P11245 290 aa5.01□□□□□ -1.61
PTPN4-209ENST00000469511 FOSL1P15407 271 aa5.01□□□□□ -1.61
PTPN4-209ENST00000469511 MSH3P20585 1137 aa5.01□□□□□ -1.61
PTPN4-209ENST00000469511 MAGP20916 626 aa5.01□□□□□ -1.61
PTPN4-209ENST00000469511 CA4P22748 312 aa5.01□□□□□ -1.61
PTPN4-209ENST00000469511 NDUFS1P28331 727 aa5.01□□□□□ -1.61
PTPN4-209ENST00000469511 AKT1P31749 480 aa5.01□□□□□ -1.61
PTPN4-209ENST00000469511 PTGER1P34995 402 aa5.01□□□□□ -1.61
PTPN4-209ENST00000469511 SERPINB6P35237 376 aa5.01□□□□□ -1.61
PTPN4-209ENST00000469511 PCK1P35558 622 aa5.01□□□□□ -1.61
PTPN4-209ENST00000469511 SPAM1P38567 509 aa5.01□□□□□ -1.61
PTPN4-209ENST00000469511 MEOX1P50221 254 aa5.01□□□□□ -1.61
PTPN4-209ENST00000469511 CASP6P55212 293 aa5.01□□□□□ -1.61
PTPN4-209ENST00000469511 TAS2R40P59535 323 aa5.01□□□□□ -1.61
PTPN4-209ENST00000469511 RBPJQ06330 500 aa5.01□□□□□ -1.61
PTPN4-209ENST00000469511 CACNG1Q06432 222 aa5.01□□□□□ -1.61
PTPN4-209ENST00000469511 ZNF33BQ06732 778 aa5.01□□□□□ -1.61
PTPN4-209ENST00000469511 BOP1Q14137 746 aaKnown RBP5.01□□□□□ -1.61
PTPN4-209ENST00000469511 FASTKQ14296 549 aaKnown RBP5.01□□□□□ -1.61
PTPN4-209ENST00000469511 KRT81Q14533 505 aa5.01□□□□□ -1.61
PTPN4-209ENST00000469511 KRT31Q15323 416 aa5.01□□□□□ -1.61
PTPN4-209ENST00000469511 INAQ16352 499 aa5.01□□□□□ -1.61
PTPN4-209ENST00000469511 CPSF6Q16630 551 aaKnown RBP eCLIP5.01□□□□□ -1.61
PTPN4-209ENST00000469511 SYT16Q17RD7 645 aa5.01□□□□□ -1.61
PTPN4-209ENST00000469511 SLC5A12Q1EHB4 618 aa5.01□□□□□ -1.61
PTPN4-209ENST00000469511 CYP27C1Q4G0S4 372 aa5.01□□□□□ -1.61
Retrieved 100 of 20,778 RNA–protein pairs in 28 ms