RNA–Protein interactions for RNA: ENST00000465238.5

COL7A1-205, Transcript of collagen type VII alpha 1 chain, humanhuman

TSL 2

Gene COL7A1, Length 587 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL7A1-205ENST00000465238 CCDC138Q96M89 665 aa17.04■□□□□ 0.32
COL7A1-205ENST00000465238 PPM1MQ96MI6 270 aa17.04■□□□□ 0.32
COL7A1-205ENST00000465238 OR2A14Q96R47 310 aa17.04■□□□□ 0.32
COL7A1-205ENST00000465238 PARD6BQ9BYG5 372 aa17.04■□□□□ 0.32
COL7A1-205ENST00000465238 CAMSAP3Q9P1Y5 1249 aaPredicted RBP17.04■□□□□ 0.32
COL7A1-205ENST00000465238 CTNNAL1Q9UBT7 734 aa17.04■□□□□ 0.32
COL7A1-205ENST00000465238 ZNF180Q9UJW8 692 aa17.04■□□□□ 0.32
COL7A1-205ENST00000465238 TLK1Q9UKI8 766 aa17.04■□□□□ 0.32
COL7A1-205ENST00000465238 BTRCQ9Y297 605 aa17.04■□□□□ 0.32
COL7A1-205ENST00000465238 MAN2B2Q9Y2E5 1009 aa17.04■□□□□ 0.32
COL7A1-205ENST00000465238 RELNP78509 3460 aa17.03■□□□□ 0.32
COL7A1-205ENST00000465238 RP1L1Q8IWN7 2480 aaPredicted RBP17.03■□□□□ 0.32
COL7A1-205ENST00000465238 SLC9B1P1A6NJY1 282 aa17.03■□□□□ 0.32
COL7A1-205ENST00000465238 CDC7O00311 574 aa17.03■□□□□ 0.32
COL7A1-205ENST00000465238 SCRG1O75711 98 aa17.03■□□□□ 0.32
COL7A1-205ENST00000465238 TUBBP07437 444 aa17.03■□□□□ 0.32
COL7A1-205ENST00000465238 ENO2P09104 434 aaPredicted RBP17.03■□□□□ 0.32
COL7A1-205ENST00000465238 CNTFP26441 200 aa17.03■□□□□ 0.32
COL7A1-205ENST00000465238 PTPN4P29074 926 aa17.03■□□□□ 0.32
COL7A1-205ENST00000465238 TYK2P29597 1187 aa17.03■□□□□ 0.32
COL7A1-205ENST00000465238 SERPINB8P50452 374 aa17.03■□□□□ 0.32
COL7A1-205ENST00000465238 PNLIPRP1P54315 467 aa17.03■□□□□ 0.32
COL7A1-205ENST00000465238 ATP6V0D1P61421 351 aa17.03■□□□□ 0.32
COL7A1-205ENST00000465238 RPS15P62841 145 aaKnown RBP17.03■□□□□ 0.32
COL7A1-205ENST00000465238 TSTA3Q13630 321 aaPredicted RBP17.03■□□□□ 0.32
COL7A1-205ENST00000465238 SF1Q15637 639 aaKnown RBP17.03■□□□□ 0.32
COL7A1-205ENST00000465238 IGFBP7Q16270 282 aa17.03■□□□□ 0.32
COL7A1-205ENST00000465238 SLC5A12Q1EHB4 618 aa17.03■□□□□ 0.32
COL7A1-205ENST00000465238 EMBQ6PCB8 327 aa17.03■□□□□ 0.32
COL7A1-205ENST00000465238 CCDC91Q7Z6B0 441 aa17.03■□□□□ 0.32
COL7A1-205ENST00000465238 TBC1D1Q86TI0 1168 aaPredicted RBP17.03■□□□□ 0.32
COL7A1-205ENST00000465238 SYVN1Q86TM6 617 aa17.03■□□□□ 0.32
COL7A1-205ENST00000465238 TMEM126BQ8IUX1 230 aa17.03■□□□□ 0.32
COL7A1-205ENST00000465238 SYTL1Q8IYJ3 562 aa17.03■□□□□ 0.32
COL7A1-205ENST00000465238 TEX19Q8NA77 164 aa17.03■□□□□ 0.32
COL7A1-205ENST00000465238 DCAKDQ8WVC6 231 aa17.03■□□□□ 0.32
COL7A1-205ENST00000465238 THAP4Q8WY91 577 aa17.03■□□□□ 0.32
COL7A1-205ENST00000465238 SMPDL3AQ92484 453 aa17.03■□□□□ 0.32
COL7A1-205ENST00000465238 DLG3Q92796 817 aa17.03■□□□□ 0.32
COL7A1-205ENST00000465238 ZNF501Q96CX3 271 aaPredicted RBP17.03■□□□□ 0.32
COL7A1-205ENST00000465238 PITPNM3Q9BZ71 974 aa17.03■□□□□ 0.32
COL7A1-205ENST00000465238 DERL2Q9GZP9 239 aa17.03■□□□□ 0.32
COL7A1-205ENST00000465238 EPB41L4BQ9H329 900 aa17.03■□□□□ 0.32
COL7A1-205ENST00000465238 AKIRIN1Q9H9L7 192 aaPredicted RBP17.03■□□□□ 0.32
COL7A1-205ENST00000465238 SOHLH2Q9NX45 425 aa17.03■□□□□ 0.32
COL7A1-205ENST00000465238 ARL15Q9NXU5 204 aa17.03■□□□□ 0.32
COL7A1-205ENST00000465238 NOVA2Q9UNW9 492 aaKnown RBP17.03■□□□□ 0.32
COL7A1-205ENST00000465238 ACOT9Q9Y305 439 aa17.03■□□□□ 0.32
COL7A1-205ENST00000465238 SNRNP200O75643 2136 aaKnown RBP17.02■□□□□ 0.32
COL7A1-205ENST00000465238 SPTBP11277 2137 aa17.02■□□□□ 0.32
COL7A1-205ENST00000465238 A0A0J9YY10 115 aa17.02■□□□□ 0.32
COL7A1-205ENST00000465238 HMX2A2RU54 273 aa17.02■□□□□ 0.32
COL7A1-205ENST00000465238 NPEPPSL1A6NEC2 478 aa17.02■□□□□ 0.32
COL7A1-205ENST00000465238 WISP3O95389 354 aaPredicted RBP17.02■□□□□ 0.32
COL7A1-205ENST00000465238 SLC16A8O95907 504 aa17.02■□□□□ 0.32
COL7A1-205ENST00000465238 ERGP11308 486 aa17.02■□□□□ 0.32
COL7A1-205ENST00000465238 PEBP1P30086 187 aaKnown RBP17.02■□□□□ 0.32
COL7A1-205ENST00000465238 AP1S2P56377 157 aa17.02■□□□□ 0.32
COL7A1-205ENST00000465238 FASTKQ14296 549 aaKnown RBP17.02■□□□□ 0.32
COL7A1-205ENST00000465238 CSHL1Q14406 222 aa17.02■□□□□ 0.32
COL7A1-205ENST00000465238 GPR19Q15760 415 aa17.02■□□□□ 0.32
COL7A1-205ENST00000465238 PHKG1Q16816 387 aa17.02■□□□□ 0.32
COL7A1-205ENST00000465238 UGT8Q16880 541 aa17.02■□□□□ 0.32
COL7A1-205ENST00000465238 FAM199XQ6PEV8 388 aaPredicted RBP17.02■□□□□ 0.32
COL7A1-205ENST00000465238 ASB18Q6ZVZ8 466 aa17.02■□□□□ 0.32
COL7A1-205ENST00000465238 ADAMTSL2Q86TH1 951 aa17.02■□□□□ 0.32
COL7A1-205ENST00000465238 TRIM73Q86UV7 250 aa17.02■□□□□ 0.32
COL7A1-205ENST00000465238 SPATA6LQ8N4H0 392 aa17.02■□□□□ 0.32
COL7A1-205ENST00000465238 FLVCR1-AS1Q8TAF5 88 aa17.02■□□□□ 0.32
COL7A1-205ENST00000465238 ZNF480Q8WV37 535 aa17.02■□□□□ 0.32
COL7A1-205ENST00000465238 TRAPPC9Q96Q05 1148 aa17.02■□□□□ 0.32
COL7A1-205ENST00000465238 FANCEQ9HB96 536 aa17.02■□□□□ 0.32
COL7A1-205ENST00000465238 SNX15Q9NRS6 342 aa17.02■□□□□ 0.32
COL7A1-205ENST00000465238 UTP6Q9NYH9 597 aaKnown RBP17.02■□□□□ 0.32
COL7A1-205ENST00000465238 FETUBQ9UGM5 382 aa17.02■□□□□ 0.32
COL7A1-205ENST00000465238 SEC16AO15027 2179 aa17.01■□□□□ 0.31
COL7A1-205ENST00000465238 A0A087X1B8 175 aa17.01■□□□□ 0.31
COL7A1-205ENST00000465238 K7EM74 188 aa17.01■□□□□ 0.31
COL7A1-205ENST00000465238 PRICKLE3O43900 615 aaPredicted RBP17.01■□□□□ 0.31
COL7A1-205ENST00000465238 FKBP9O95302 570 aa17.01■□□□□ 0.31
COL7A1-205ENST00000465238 KLK3P07288 261 aaPredicted RBP17.01■□□□□ 0.31
COL7A1-205ENST00000465238 SNRPAP09012 282 aaKnown RBP17.01■□□□□ 0.31
COL7A1-205ENST00000465238 SLC35E2BP0CK96 405 aa17.01■□□□□ 0.31
COL7A1-205ENST00000465238 PVRP15151 417 aa17.01■□□□□ 0.31
COL7A1-205ENST00000465238 ST6GAL1P15907 406 aa17.01■□□□□ 0.31
COL7A1-205ENST00000465238 NR1D1P20393 614 aa17.01■□□□□ 0.31
COL7A1-205ENST00000465238 RPA3P35244 121 aaPredicted RBP17.01■□□□□ 0.31
COL7A1-205ENST00000465238 SLC26A3P40879 764 aa17.01■□□□□ 0.31
COL7A1-205ENST00000465238 ZNF517Q6ZMY9 492 aaPredicted RBP17.01■□□□□ 0.31
COL7A1-205ENST00000465238 FRA10AC1Q70Z53 315 aa17.01■□□□□ 0.31
COL7A1-205ENST00000465238 PPFIBP2Q8ND30 876 aa17.01■□□□□ 0.31
COL7A1-205ENST00000465238 AENQ8WTP8 325 aaKnown RBP17.01■□□□□ 0.31
COL7A1-205ENST00000465238 ATL1Q8WXF7 558 aa17.01■□□□□ 0.31
COL7A1-205ENST00000465238 MR1Q95460 341 aa17.01■□□□□ 0.31
COL7A1-205ENST00000465238 UBXN10Q96LJ8 280 aa17.01■□□□□ 0.31
COL7A1-205ENST00000465238 LRFN5Q96NI6 719 aa17.01■□□□□ 0.31
COL7A1-205ENST00000465238 RUFY1Q96T51 708 aa17.01■□□□□ 0.31
COL7A1-205ENST00000465238 DHRS4Q9BTZ2 278 aa17.01■□□□□ 0.31
COL7A1-205ENST00000465238 UNKQ9C0B0 810 aaKnown RBP17.01■□□□□ 0.31
COL7A1-205ENST00000465238 KLHL25Q9H0H3 589 aa17.01■□□□□ 0.31
Retrieved 100 of 20,778 RNA–protein pairs in 28.3 ms