RNA–Protein interactions for RNA: ENST00000454569.5

SCN9A-205, Transcript of sodium voltage-gated channel alpha subunit 9, humanhuman

TSL 1 (best)

Gene SCN9A, Length 1,585 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN9A-205ENST00000454569 ZNF473Q8WTR7 871 aaKnown RBP10.59□□□□□ -0.71
SCN9A-205ENST00000454569 SMPDL3AQ92484 453 aa10.59□□□□□ -0.71
SCN9A-205ENST00000454569 PPP1R36Q96LQ0 422 aa10.59□□□□□ -0.71
SCN9A-205ENST00000454569 APOLD1Q96LR9 279 aa10.59□□□□□ -0.71
SCN9A-205ENST00000454569 OR2A14Q96R47 310 aa10.59□□□□□ -0.71
SCN9A-205ENST00000454569 ZNF382Q96SR6 550 aa10.59□□□□□ -0.71
SCN9A-205ENST00000454569 MIPEPQ99797 713 aa10.59□□□□□ -0.71
SCN9A-205ENST00000454569 NTMT1Q9BV86 223 aa10.59□□□□□ -0.71
SCN9A-205ENST00000454569 SRMSQ9H3Y6 488 aa10.59□□□□□ -0.71
SCN9A-205ENST00000454569 NPHS2Q9NP85 383 aa10.59□□□□□ -0.71
SCN9A-205ENST00000454569 SLC6A20Q9NP91 592 aa10.59□□□□□ -0.71
SCN9A-205ENST00000454569 CCDC177Q9NQR7 707 aaPredicted RBP10.59□□□□□ -0.71
SCN9A-205ENST00000454569 FARSBQ9NSD9 589 aaKnown RBP10.59□□□□□ -0.71
SCN9A-205ENST00000454569 NLGN3Q9NZ94 848 aa10.59□□□□□ -0.71
SCN9A-205ENST00000454569 LRIT1Q9P2V4 623 aa10.59□□□□□ -0.71
SCN9A-205ENST00000454569 TRAF6Q9Y4K3 522 aa10.59□□□□□ -0.71
SCN9A-205ENST00000454569 ANGPTL3Q9Y5C1 460 aa10.59□□□□□ -0.71
SCN9A-205ENST00000454569 ADAMTS20P59510 1910 aa10.58□□□□□ -0.72
SCN9A-205ENST00000454569 ISM1B1AKI9 464 aa10.58□□□□□ -0.72
SCN9A-205ENST00000454569 FFAR3O14843 346 aa10.58□□□□□ -0.72
SCN9A-205ENST00000454569 GPR42O15529 346 aa10.58□□□□□ -0.72
SCN9A-205ENST00000454569 ESRRBO95718 433 aa10.58□□□□□ -0.72
SCN9A-205ENST00000454569 CER1O95813 267 aa10.58□□□□□ -0.72
SCN9A-205ENST00000454569 CAPN1P07384 714 aa10.58□□□□□ -0.72
SCN9A-205ENST00000454569 SYPP08247 313 aa10.58□□□□□ -0.72
SCN9A-205ENST00000454569 ZNF806P0C7X5 589 aa10.58□□□□□ -0.72
SCN9A-205ENST00000454569 CDH1P12830 882 aa10.58□□□□□ -0.72
SCN9A-205ENST00000454569 NDUFS1P28331 727 aa10.58□□□□□ -0.72
SCN9A-205ENST00000454569 RPL14P50914 215 aaKnown RBP10.58□□□□□ -0.72
SCN9A-205ENST00000454569 CCNG1P51959 295 aa10.58□□□□□ -0.72
SCN9A-205ENST00000454569 OR1D5P58170 312 aa10.58□□□□□ -0.72
SCN9A-205ENST00000454569 GALNT1Q10472 559 aaPredicted RBP10.58□□□□□ -0.72
SCN9A-205ENST00000454569 COL9A2Q14055 689 aaPredicted RBP10.58□□□□□ -0.72
SCN9A-205ENST00000454569 PERM1Q5SV97 790 aa10.58□□□□□ -0.72
SCN9A-205ENST00000454569 THEMIS2Q5TEJ8 643 aa10.58□□□□□ -0.72
SCN9A-205ENST00000454569 IL27RAQ6UWB1 636 aa10.58□□□□□ -0.72
SCN9A-205ENST00000454569 LCTLQ6UWM7 567 aa10.58□□□□□ -0.72
SCN9A-205ENST00000454569 GPRIN3Q6ZVF9 776 aa10.58□□□□□ -0.72
SCN9A-205ENST00000454569 MILR1Q7Z6M3 343 aa10.58□□□□□ -0.72
SCN9A-205ENST00000454569 ARL10Q8N8L6 244 aa10.58□□□□□ -0.72
SCN9A-205ENST00000454569 PIWIL2Q8TC59 973 aaKnown RBP10.58□□□□□ -0.72
SCN9A-205ENST00000454569 SETD7Q8WTS6 366 aaKnown RBP10.58□□□□□ -0.72
SCN9A-205ENST00000454569 SREK1Q8WXA9 508 aaKnown RBP10.58□□□□□ -0.72
SCN9A-205ENST00000454569 ATP6V1E2Q96A05 226 aa10.58□□□□□ -0.72
SCN9A-205ENST00000454569 KCTD12Q96CX2 325 aaKnown RBP10.58□□□□□ -0.72
SCN9A-205ENST00000454569 MTFMTQ96DP5 389 aaKnown RBP10.58□□□□□ -0.72
SCN9A-205ENST00000454569 C3orf30Q96M34 536 aa10.58□□□□□ -0.72
SCN9A-205ENST00000454569 HBEGFQ99075 208 aa10.58□□□□□ -0.72
SCN9A-205ENST00000454569 EBF4Q9BQW3 602 aa10.58□□□□□ -0.72
SCN9A-205ENST00000454569 ILKAPQ9H0C8 392 aaPredicted RBP10.58□□□□□ -0.72
SCN9A-205ENST00000454569 KLHL25Q9H0H3 589 aa10.58□□□□□ -0.72
SCN9A-205ENST00000454569 GIMAP2Q9UG22 337 aa10.58□□□□□ -0.72
SCN9A-205ENST00000454569 DCTN4Q9UJW0 460 aa10.58□□□□□ -0.72
SCN9A-205ENST00000454569 ZNF490Q9ULM2 529 aaPredicted RBP10.58□□□□□ -0.72
SCN9A-205ENST00000454569 BTRCQ9Y297 605 aa10.58□□□□□ -0.72
SCN9A-205ENST00000454569 DNAJC15Q9Y5T4 150 aa10.58□□□□□ -0.72
SCN9A-205ENST00000454569 ERICH4A6NGS2 130 aa10.57□□□□□ -0.72
SCN9A-205ENST00000454569 H7BY64 318 aa10.57□□□□□ -0.72
SCN9A-205ENST00000454569 MATN2O00339 956 aa10.57□□□□□ -0.72
SCN9A-205ENST00000454569 AZIN1O14977 448 aa10.57□□□□□ -0.72
SCN9A-205ENST00000454569 KIF1CO43896 1103 aaKnown RBP10.57□□□□□ -0.72
SCN9A-205ENST00000454569 PCDHGA12O60330 932 aa10.57□□□□□ -0.72
SCN9A-205ENST00000454569 GDF9O60383 454 aa10.57□□□□□ -0.72
SCN9A-205ENST00000454569 SKAP2O75563 359 aaPredicted RBP10.57□□□□□ -0.72
SCN9A-205ENST00000454569 FGF4P08620 206 aa10.57□□□□□ -0.72
SCN9A-205ENST00000454569 SLC2A4P14672 509 aa10.57□□□□□ -0.72
SCN9A-205ENST00000454569 PVRP15151 417 aa10.57□□□□□ -0.72
SCN9A-205ENST00000454569 UGT2B7P16662 529 aa10.57□□□□□ -0.72
SCN9A-205ENST00000454569 SHMT2P34897 504 aa10.57□□□□□ -0.72
SCN9A-205ENST00000454569 SERPINB5P36952 375 aa10.57□□□□□ -0.72
SCN9A-205ENST00000454569 ARL1P40616 181 aaPredicted RBP10.57□□□□□ -0.72
SCN9A-205ENST00000454569 NBL1P41271 181 aa10.57□□□□□ -0.72
SCN9A-205ENST00000454569 NEK2P51955 445 aa10.57□□□□□ -0.72
SCN9A-205ENST00000454569 BTKQ06187 659 aa10.57□□□□□ -0.72
SCN9A-205ENST00000454569 PRKAA1Q13131 559 aa10.57□□□□□ -0.72
SCN9A-205ENST00000454569 E2F2Q14209 437 aa10.57□□□□□ -0.72
SCN9A-205ENST00000454569 PDCD2Q16342 344 aaPredicted RBP10.57□□□□□ -0.72
SCN9A-205ENST00000454569 CPSF6Q16630 551 aaKnown RBP eCLIP10.57□□□□□ -0.72
SCN9A-205ENST00000454569 SLC9B1Q4ZJI4 515 aa10.57□□□□□ -0.72
SCN9A-205ENST00000454569 XKR6Q5GH73 641 aa10.57□□□□□ -0.72
SCN9A-205ENST00000454569 GKAP1Q5VSY0 366 aaPredicted RBP10.57□□□□□ -0.72
SCN9A-205ENST00000454569 KANK2Q63ZY3 851 aa10.57□□□□□ -0.72
SCN9A-205ENST00000454569 ICE2Q659A1 982 aa10.57□□□□□ -0.72
SCN9A-205ENST00000454569 METTL2BQ6P1Q9 378 aaKnown RBP10.57□□□□□ -0.72
SCN9A-205ENST00000454569 GUSBP11Q6P575 273 aa10.57□□□□□ -0.72
SCN9A-205ENST00000454569 DBX2Q6ZNG2 339 aa10.57□□□□□ -0.72
SCN9A-205ENST00000454569 PRR23CQ6ZRP0 262 aa10.57□□□□□ -0.72
SCN9A-205ENST00000454569 PIGWQ7Z7B1 504 aa10.57□□□□□ -0.72
SCN9A-205ENST00000454569 TMPRSS11BQ86T26 416 aa10.57□□□□□ -0.72
SCN9A-205ENST00000454569 CRLF3Q8IUI8 442 aa10.57□□□□□ -0.72
SCN9A-205ENST00000454569 PLD3Q8IV08 490 aa10.57□□□□□ -0.72
SCN9A-205ENST00000454569 Q8N9G6 341 aaPredicted RBP10.57□□□□□ -0.72
SCN9A-205ENST00000454569 L3MBTL4Q8NA19 623 aa10.57□□□□□ -0.72
SCN9A-205ENST00000454569 OR2L3Q8NG85 312 aa10.57□□□□□ -0.72
SCN9A-205ENST00000454569 ZFPM2Q8WW38 1151 aa10.57□□□□□ -0.72
SCN9A-205ENST00000454569 SLC5A11Q8WWX8 675 aa10.57□□□□□ -0.72
SCN9A-205ENST00000454569 SH3KBP1Q96B97 665 aa10.57□□□□□ -0.72
SCN9A-205ENST00000454569 PRAP1Q96NZ9 151 aa10.57□□□□□ -0.72
SCN9A-205ENST00000454569 TRMOQ9BU70 441 aa10.57□□□□□ -0.72
SCN9A-205ENST00000454569 NUF2Q9BZD4 464 aa10.57□□□□□ -0.72
Retrieved 100 of 20,778 RNA–protein pairs in 46.8 ms