RNA–Protein interactions for RNA: ENST00000443046.5

HMGN1-208, Transcript of high mobility group nucleosome binding domain 1, humanhuman

TSL 3

Gene HMGN1, Length 823 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGN1-208ENST00000443046 HEXBP07686 556 aa13.65□□□□□ -0.22
HMGN1-208ENST00000443046 HOXB4P17483 251 aaPredicted RBP13.65□□□□□ -0.22
HMGN1-208ENST00000443046 IGFBP2P18065 325 aa13.65□□□□□ -0.22
HMGN1-208ENST00000443046 ARF3P61204 181 aaPredicted RBP13.65□□□□□ -0.22
HMGN1-208ENST00000443046 YBX1P67809 324 aaKnown RBP13.65□□□□□ -0.22
HMGN1-208ENST00000443046 LONRF1Q17RB8 773 aa13.65□□□□□ -0.22
HMGN1-208ENST00000443046 CCSMST1Q4G0I0 132 aa13.65□□□□□ -0.22
HMGN1-208ENST00000443046 DARS2Q6PI48 645 aaKnown RBP13.65□□□□□ -0.22
HMGN1-208ENST00000443046 NCCRP1Q6ZVX7 275 aaPredicted RBP13.65□□□□□ -0.22
HMGN1-208ENST00000443046 NEK10Q6ZWH5 1172 aa13.65□□□□□ -0.22
HMGN1-208ENST00000443046 SIAH3Q8IW03 269 aa13.65□□□□□ -0.22
HMGN1-208ENST00000443046 CFAP61Q8NHU2 1237 aa13.65□□□□□ -0.22
HMGN1-208ENST00000443046 RAD51AP1Q96B01 352 aa13.65□□□□□ -0.22
HMGN1-208ENST00000443046 SCMH1Q96GD3 660 aa13.65□□□□□ -0.22
HMGN1-208ENST00000443046 MAGED4Q96JG8 741 aa13.65□□□□□ -0.22
HMGN1-208ENST00000443046 DMRTA2Q96SC8 542 aa13.65□□□□□ -0.22
HMGN1-208ENST00000443046 FAM118BQ9BPY3 351 aa13.65□□□□□ -0.22
HMGN1-208ENST00000443046 ZFYVE21Q9BQ24 234 aa13.65□□□□□ -0.22
HMGN1-208ENST00000443046 TMUB1Q9BVT8 246 aa13.65□□□□□ -0.22
HMGN1-208ENST00000443046 LRRC40Q9H9A6 602 aa13.65□□□□□ -0.22
HMGN1-208ENST00000443046 ABHD10Q9NUJ1 306 aa13.65□□□□□ -0.22
HMGN1-208ENST00000443046 ZNHIT6Q9NWK9 470 aaKnown RBP13.65□□□□□ -0.22
HMGN1-208ENST00000443046 PIH1D1Q9NWS0 290 aaKnown RBP13.65□□□□□ -0.22
HMGN1-208ENST00000443046 TEKT2Q9UIF3 430 aa13.65□□□□□ -0.22
HMGN1-208ENST00000443046 NEU2Q9Y3R4 380 aa13.65□□□□□ -0.22
HMGN1-208ENST00000443046 IQCF5A8MTL0 148 aa13.64□□□□□ -0.23
HMGN1-208ENST00000443046 F8W8V4 182 aa13.64□□□□□ -0.23
HMGN1-208ENST00000443046 PRPF4O43172 522 aaKnown RBP eCLIP13.64□□□□□ -0.23
HMGN1-208ENST00000443046 FOXS1O43638 330 aa13.64□□□□□ -0.23
HMGN1-208ENST00000443046 DIAPH2O60879 1101 aa13.64□□□□□ -0.23
HMGN1-208ENST00000443046 C1orf105O95561 183 aa13.64□□□□□ -0.23
HMGN1-208ENST00000443046 EIF2S1P05198 315 aaKnown RBP13.64□□□□□ -0.23
HMGN1-208ENST00000443046 APOA4P06727 396 aa13.64□□□□□ -0.23
HMGN1-208ENST00000443046 ACVR1Q04771 509 aa13.64□□□□□ -0.23
HMGN1-208ENST00000443046 ZNF33BQ06732 778 aa13.64□□□□□ -0.23
HMGN1-208ENST00000443046 TRIM14Q14142 442 aa13.64□□□□□ -0.23
HMGN1-208ENST00000443046 ACER2Q5QJU3 275 aa13.64□□□□□ -0.23
HMGN1-208ENST00000443046 CCDC181Q5TID7 509 aa13.64□□□□□ -0.23
HMGN1-208ENST00000443046 C11orf63Q6NUN7 778 aa13.64□□□□□ -0.23
HMGN1-208ENST00000443046 ZNF534Q76KX8 674 aa13.64□□□□□ -0.23
HMGN1-208ENST00000443046 ZC3H7AQ8IWR0 971 aaKnown RBP13.64□□□□□ -0.23
HMGN1-208ENST00000443046 HDAC10Q969S8 669 aa13.64□□□□□ -0.23
HMGN1-208ENST00000443046 SIGLEC12Q96PQ1 595 aa13.64□□□□□ -0.23
HMGN1-208ENST00000443046 ALS2CR12Q96Q35 445 aa13.64□□□□□ -0.23
HMGN1-208ENST00000443046 TRIM51Q9BSJ1 452 aa13.64□□□□□ -0.23
HMGN1-208ENST00000443046 TMEM121Q9BTD3 319 aa13.64□□□□□ -0.23
HMGN1-208ENST00000443046 OSBPL8Q9BZF1 889 aa13.64□□□□□ -0.23
HMGN1-208ENST00000443046 RIMKLBQ9ULI2 386 aa13.64□□□□□ -0.23
HMGN1-208ENST00000443046 RUVBL1Q9Y265 456 aaKnown RBP13.64□□□□□ -0.23
HMGN1-208ENST00000443046 SBDSQ9Y3A5 250 aaKnown RBP eCLIP13.64□□□□□ -0.23
HMGN1-208ENST00000443046 HCFC1P51610 2035 aa13.64□□□□□ -0.23
HMGN1-208ENST00000443046 FBN3Q75N90 2809 aa13.63□□□□□ -0.23
HMGN1-208ENST00000443046 KRT87PA6NCN2 255 aa13.63□□□□□ -0.23
HMGN1-208ENST00000443046 RCCD1A6NED2 376 aa13.63□□□□□ -0.23
HMGN1-208ENST00000443046 E9PLN8 166 aa13.63□□□□□ -0.23
HMGN1-208ENST00000443046 TTI1O43156 1089 aa13.63□□□□□ -0.23
HMGN1-208ENST00000443046 ZNF189O75820 626 aaPredicted RBP13.63□□□□□ -0.23
HMGN1-208ENST00000443046 GOT2P00505 430 aaKnown RBP13.63□□□□□ -0.23
HMGN1-208ENST00000443046 TUBA3CQ13748 450 aa13.63□□□□□ -0.23
HMGN1-208ENST00000443046 SEMA3AQ14563 771 aa13.63□□□□□ -0.23
HMGN1-208ENST00000443046 HKDC1Q2TB90 917 aa13.63□□□□□ -0.23
HMGN1-208ENST00000443046 CCDC38Q502W7 563 aa13.63□□□□□ -0.23
HMGN1-208ENST00000443046 GARNL3Q5VVW2 1013 aa13.63□□□□□ -0.23
HMGN1-208ENST00000443046 PLAG1Q6DJT9 500 aa13.63□□□□□ -0.23
HMGN1-208ENST00000443046 TUBA3EQ6PEY2 450 aa13.63□□□□□ -0.23
HMGN1-208ENST00000443046 MEX3BQ6ZN04 569 aaKnown RBP13.63□□□□□ -0.23
HMGN1-208ENST00000443046 DOLPP1Q86YN1 238 aa13.63□□□□□ -0.23
HMGN1-208ENST00000443046 BEST3Q8N1M1 668 aa13.63□□□□□ -0.23
HMGN1-208ENST00000443046 AGAP11Q8TF27 550 aa13.63□□□□□ -0.23
HMGN1-208ENST00000443046 CABS1Q96KC9 395 aa13.63□□□□□ -0.23
HMGN1-208ENST00000443046 FRMD6Q96NE9 622 aa13.63□□□□□ -0.23
HMGN1-208ENST00000443046 TTC1Q99614 292 aa13.63□□□□□ -0.23
HMGN1-208ENST00000443046 NPAS2Q99743 824 aa13.63□□□□□ -0.23
HMGN1-208ENST00000443046 VKORC1Q9BQB6 163 aa13.63□□□□□ -0.23
HMGN1-208ENST00000443046 DPH7Q9BTV6 452 aa13.63□□□□□ -0.23
HMGN1-208ENST00000443046 TSSK1BQ9BXA7 367 aa13.63□□□□□ -0.23
HMGN1-208ENST00000443046 TNFRSF10DQ9UBN6 386 aa13.63□□□□□ -0.23
HMGN1-208ENST00000443046 SLC2A6Q9UGQ3 507 aa13.63□□□□□ -0.23
HMGN1-208ENST00000443046 MKL2Q9ULH7 1088 aa13.63□□□□□ -0.23
HMGN1-208ENST00000443046 NFS1Q9Y697 457 aa13.63□□□□□ -0.23
HMGN1-208ENST00000443046 INTS1Q8N201 2190 aaKnown RBP13.63□□□□□ -0.23
HMGN1-208ENST00000443046 PRRC2AP48634 2157 aaKnown RBP13.62□□□□□ -0.23
HMGN1-208ENST00000443046 IGKV1-8A0A0C4DH67 115 aa13.62□□□□□ -0.23
HMGN1-208ENST00000443046 NPIPA5E9PKD4 350 aa13.62□□□□□ -0.23
HMGN1-208ENST00000443046 FANCGO15287 622 aa13.62□□□□□ -0.23
HMGN1-208ENST00000443046 ASNA1O43681 348 aa13.62□□□□□ -0.23
HMGN1-208ENST00000443046 PHF2O75151 1096 aa13.62□□□□□ -0.23
HMGN1-208ENST00000443046 MLYCDO95822 493 aa13.62□□□□□ -0.23
HMGN1-208ENST00000443046 UQCRHP07919 91 aa13.62□□□□□ -0.23
HMGN1-208ENST00000443046 CYC1P08574 325 aa13.62□□□□□ -0.23
HMGN1-208ENST00000443046 C8orf89P0DMQ9 161 aa13.62□□□□□ -0.23
HMGN1-208ENST00000443046 ERVK-10P10266 1014 aa13.62□□□□□ -0.23
HMGN1-208ENST00000443046 CTNNA1P35221 906 aaKnown RBP13.62□□□□□ -0.23
HMGN1-208ENST00000443046 CD96P40200 585 aa13.62□□□□□ -0.23
HMGN1-208ENST00000443046 ALDH6A1Q02252 535 aaKnown RBP13.62□□□□□ -0.23
HMGN1-208ENST00000443046 NAA25Q14CX7 972 aa13.62□□□□□ -0.23
HMGN1-208ENST00000443046 SYT16Q17RD7 645 aa13.62□□□□□ -0.23
HMGN1-208ENST00000443046 CAVIN1Q6NZI2 390 aaKnown RBP13.62□□□□□ -0.23
HMGN1-208ENST00000443046 LRRC8BQ6P9F7 803 aa13.62□□□□□ -0.23
HMGN1-208ENST00000443046 TTC23LQ6PF05 361 aa13.62□□□□□ -0.23
Retrieved 100 of 20,778 RNA–protein pairs in 62 ms