RNA–Protein interactions for RNA: ENST00000436724.5

PTPRF-207, Transcript of protein tyrosine phosphatase, receptor type F, humanhuman

TSL 1 (best)

Gene PTPRF, Length 2,168 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRF-207ENST00000436724 PCNAP12004 261 aa20.39■□□□□ 0.86
PTPRF-207ENST00000436724 ME2P23368 584 aa20.39■□□□□ 0.86
PTPRF-207ENST00000436724 JAK1P23458 1154 aa20.39■□□□□ 0.86
PTPRF-207ENST00000436724 TACR1P25103 407 aa20.39■□□□□ 0.86
PTPRF-207ENST00000436724 PCDH1Q08174 1060 aa20.39■□□□□ 0.86
PTPRF-207ENST00000436724 SF1Q15637 639 aaKnown RBP20.39■□□□□ 0.86
PTPRF-207ENST00000436724 CACHD1Q5VU97 1274 aa20.39■□□□□ 0.86
PTPRF-207ENST00000436724 SLC2A7Q6PXP3 512 aa20.39■□□□□ 0.86
PTPRF-207ENST00000436724 JADE3Q92613 823 aa20.39■□□□□ 0.86
PTPRF-207ENST00000436724 APOLD1Q96LR9 279 aa20.39■□□□□ 0.86
PTPRF-207ENST00000436724 MAGEB10Q96LZ2 347 aaPredicted RBP20.39■□□□□ 0.86
PTPRF-207ENST00000436724 GUCD1Q96NT3 240 aa20.39■□□□□ 0.86
PTPRF-207ENST00000436724 FERD3LQ96RJ6 166 aa20.39■□□□□ 0.86
PTPRF-207ENST00000436724 TRIT1Q9H3H1 467 aaKnown RBP20.39■□□□□ 0.86
PTPRF-207ENST00000436724 GPRC5BQ9NZH0 403 aa20.39■□□□□ 0.86
PTPRF-207ENST00000436724 DYRK1BQ9Y463 629 aa20.39■□□□□ 0.86
PTPRF-207ENST00000436724 MAGEA13PA6NCF6 341 aa20.39■□□□□ 0.85
PTPRF-207ENST00000436724 PRR19A6NJB7 356 aa20.39■□□□□ 0.85
PTPRF-207ENST00000436724 DGKEP52429 567 aa20.39■□□□□ 0.85
PTPRF-207ENST00000436724 SMU1Q2TAY7 513 aa20.39■□□□□ 0.85
PTPRF-207ENST00000436724 GCNT7Q6ZNI0 430 aa20.39■□□□□ 0.85
PTPRF-207ENST00000436724 TSPEARQ8WU66 669 aa20.39■□□□□ 0.85
PTPRF-207ENST00000436724 TSACCQ96A04 125 aaPredicted RBP20.39■□□□□ 0.85
PTPRF-207ENST00000436724 LRRC58Q96CX6 371 aa20.39■□□□□ 0.85
PTPRF-207ENST00000436724 SCARF2Q96GP6 870 aaPredicted RBP20.39■□□□□ 0.85
PTPRF-207ENST00000436724 GPATCH1Q9BRR8 931 aaKnown RBP20.39■□□□□ 0.85
PTPRF-207ENST00000436724 VCXQ9H320 206 aa20.39■□□□□ 0.85
PTPRF-207ENST00000436724 PRM3Q9NNZ6 103 aa20.39■□□□□ 0.85
PTPRF-207ENST00000436724 SCOCQ9UIL1 159 aa20.39■□□□□ 0.85
PTPRF-207ENST00000436724 KLHL33A6NCF5 533 aa20.38■□□□□ 0.85
PTPRF-207ENST00000436724 PDZK1P1A8MUH7 402 aa20.38■□□□□ 0.85
PTPRF-207ENST00000436724 EEDO75530 441 aaKnown RBP20.38■□□□□ 0.85
PTPRF-207ENST00000436724 PLIN5Q00G26 463 aa20.38■□□□□ 0.85
PTPRF-207ENST00000436724 NFYCQ13952 458 aa20.38■□□□□ 0.85
PTPRF-207ENST00000436724 E2F2Q14209 437 aa20.38■□□□□ 0.85
PTPRF-207ENST00000436724 SLBPQ14493 270 aaKnown RBP eCLIP20.38■□□□□ 0.85
PTPRF-207ENST00000436724 PRAMEF14Q5SWL7 426 aa20.38■□□□□ 0.85
PTPRF-207ENST00000436724 PRAMEF13Q5VWM6 474 aa20.38■□□□□ 0.85
PTPRF-207ENST00000436724 DENND6BQ8NEG7 585 aa20.38■□□□□ 0.85
PTPRF-207ENST00000436724 HUS1BQ8NHY5 278 aa20.38■□□□□ 0.85
PTPRF-207ENST00000436724 SLC5A11Q8WWX8 675 aa20.38■□□□□ 0.85
PTPRF-207ENST00000436724 CMTM7Q96FZ5 175 aa20.38■□□□□ 0.85
PTPRF-207ENST00000436724 TSSK3Q96PN8 268 aa20.38■□□□□ 0.85
PTPRF-207ENST00000436724 HHIPQ96QV1 700 aa20.38■□□□□ 0.85
PTPRF-207ENST00000436724 TMEM181Q9P2C4 612 aa20.38■□□□□ 0.85
PTPRF-207ENST00000436724 PCDHGA11Q9Y5H2 935 aa20.38■□□□□ 0.85
PTPRF-207ENST00000436724 KRBA1A5PL33 1030 aa20.38■□□□□ 0.85
PTPRF-207ENST00000436724 RPN2P04844 631 aa20.38■□□□□ 0.85
PTPRF-207ENST00000436724 AMD1P17707 334 aa20.38■□□□□ 0.85
PTPRF-207ENST00000436724 PRPH2P23942 346 aa20.38■□□□□ 0.85
PTPRF-207ENST00000436724 PSMB5P28074 263 aa20.38■□□□□ 0.85
PTPRF-207ENST00000436724 NFATC4Q14934 902 aa20.38■□□□□ 0.85
PTPRF-207ENST00000436724 UBXN2BQ14CS0 331 aa20.38■□□□□ 0.85
PTPRF-207ENST00000436724 LPCAT4Q643R3 524 aa20.38■□□□□ 0.85
PTPRF-207ENST00000436724 SYT13Q7L8C5 426 aa20.38■□□□□ 0.85
PTPRF-207ENST00000436724 TBC1D21Q8IYX1 336 aa20.38■□□□□ 0.85
PTPRF-207ENST00000436724 ZNF740Q8NDX6 193 aa20.38■□□□□ 0.85
PTPRF-207ENST00000436724 DNAJB14Q8TBM8 379 aa20.38■□□□□ 0.85
PTPRF-207ENST00000436724 TOE1Q96GM8 510 aaKnown RBP20.38■□□□□ 0.85
PTPRF-207ENST00000436724 EGLN2Q96KS0 407 aa20.38■□□□□ 0.85
PTPRF-207ENST00000436724 NR1H4Q96RI1 486 aaPredicted RBP20.38■□□□□ 0.85
PTPRF-207ENST00000436724 EBPLQ9BY08 206 aa20.38■□□□□ 0.85
PTPRF-207ENST00000436724 DPY30Q9C005 99 aa20.38■□□□□ 0.85
PTPRF-207ENST00000436724 PCDHAC1Q9H158 963 aa20.38■□□□□ 0.85
PTPRF-207ENST00000436724 SPATA6Q9NWH7 488 aaPredicted RBP20.38■□□□□ 0.85
PTPRF-207ENST00000436724 TAC3Q9UHF0 121 aa20.38■□□□□ 0.85
PTPRF-207ENST00000436724 GON4LQ3T8J9 2241 aa20.37■□□□□ 0.85
PTPRF-207ENST00000436724 H3BNX3 289 aa20.37■□□□□ 0.85
PTPRF-207ENST00000436724 TRIM38O00635 465 aa20.37■□□□□ 0.85
PTPRF-207ENST00000436724 MAP3K13O43283 966 aa20.37■□□□□ 0.85
PTPRF-207ENST00000436724 PI15O43692 258 aa20.37■□□□□ 0.85
PTPRF-207ENST00000436724 IGHV4-34P06331 123 aa20.37■□□□□ 0.85
PTPRF-207ENST00000436724 C1GALT1C1LP0DN25 315 aa20.37■□□□□ 0.85
PTPRF-207ENST00000436724 ERGP11308 486 aa20.37■□□□□ 0.85
PTPRF-207ENST00000436724 IDSP22304 550 aa20.37■□□□□ 0.85
PTPRF-207ENST00000436724 AK4P27144 223 aaPredicted RBP20.37■□□□□ 0.85
PTPRF-207ENST00000436724 KIAA1024LP59773 190 aa20.37■□□□□ 0.85
PTPRF-207ENST00000436724 FAM174BQ3ZCQ3 159 aa20.37■□□□□ 0.85
PTPRF-207ENST00000436724 COQ5Q5HYK3 327 aa20.37■□□□□ 0.85
PTPRF-207ENST00000436724 PDSS2Q86YH6 399 aa20.37■□□□□ 0.85
PTPRF-207ENST00000436724 CCL4L1Q8NHW4 92 aa20.37■□□□□ 0.85
PTPRF-207ENST00000436724 RLN3Q8WXF3 142 aa20.37■□□□□ 0.85
PTPRF-207ENST00000436724 OR2M4Q96R27 311 aa20.37■□□□□ 0.85
PTPRF-207ENST00000436724 FOXQ1Q9C009 403 aa20.37■□□□□ 0.85
PTPRF-207ENST00000436724 XKR8Q9H6D3 395 aa20.37■□□□□ 0.85
PTPRF-207ENST00000436724 ASIC5Q9NY37 505 aa20.37■□□□□ 0.85
PTPRF-207ENST00000436724 SCHIP1Q9P0W5 487 aaPredicted RBP20.37■□□□□ 0.85
PTPRF-207ENST00000436724 VPS29Q9UBQ0 182 aa20.37■□□□□ 0.85
PTPRF-207ENST00000436724 LEF1Q9UJU2 399 aaPredicted RBP20.37■□□□□ 0.85
PTPRF-207ENST00000436724 SERTM1A2A2V5 107 aa20.36■□□□□ 0.85
PTPRF-207ENST00000436724 NME4O00746 187 aa20.36■□□□□ 0.85
PTPRF-207ENST00000436724 CDH1P12830 882 aa20.36■□□□□ 0.85
PTPRF-207ENST00000436724 SDC1P18827 310 aa20.36■□□□□ 0.85
PTPRF-207ENST00000436724 SLC6A2P23975 617 aa20.36■□□□□ 0.85
PTPRF-207ENST00000436724 CSTF3Q12996 717 aaKnown RBP20.36■□□□□ 0.85
PTPRF-207ENST00000436724 FZD5Q13467 585 aa20.36■□□□□ 0.85
PTPRF-207ENST00000436724 FLOT2Q14254 428 aa20.36■□□□□ 0.85
PTPRF-207ENST00000436724 SFT2D3Q587I9 215 aa20.36■□□□□ 0.85
PTPRF-207ENST00000436724 ATG9BQ674R7 924 aa20.36■□□□□ 0.85
PTPRF-207ENST00000436724 MED27Q6P2C8 311 aa20.36■□□□□ 0.85
Retrieved 100 of 20,778 RNA–protein pairs in 23.9 ms