RNA–Protein interactions for RNA: ENST00000429035.1

SDC1-204, Transcript of syndecan 1, humanhuman

TSL 3

Gene SDC1, Length 646 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SDC1-204ENST00000429035 ARF3P61204 181 aaPredicted RBP13.83□□□□□ -0.2
SDC1-204ENST00000429035 MFAP5Q13361 173 aa13.83□□□□□ -0.2
SDC1-204ENST00000429035 SIX1Q15475 284 aaPredicted RBP13.83□□□□□ -0.2
SDC1-204ENST00000429035 CCNG2Q16589 344 aa13.83□□□□□ -0.2
SDC1-204ENST00000429035 KLHL38Q2WGJ6 581 aa13.83□□□□□ -0.2
SDC1-204ENST00000429035 ACSBG2Q5FVE4 666 aa13.83□□□□□ -0.2
SDC1-204ENST00000429035 MEI1Q5TIA1 1274 aa13.83□□□□□ -0.2
SDC1-204ENST00000429035 GAS2L3Q86XJ1 694 aa13.83□□□□□ -0.2
SDC1-204ENST00000429035 SIRT6Q8N6T7 355 aa13.83□□□□□ -0.2
SDC1-204ENST00000429035 PPFIBP2Q8ND30 876 aa13.83□□□□□ -0.2
SDC1-204ENST00000429035 CATSPER1Q8NEC5 780 aa13.83□□□□□ -0.2
SDC1-204ENST00000429035 HMGCLL1Q8TB92 370 aa13.83□□□□□ -0.2
SDC1-204ENST00000429035 BRIX1Q8TDN6 353 aaKnown RBP13.83□□□□□ -0.2
SDC1-204ENST00000429035 SMPDL3AQ92484 453 aa13.83□□□□□ -0.2
SDC1-204ENST00000429035 RERGQ96A58 199 aaPredicted RBP13.83□□□□□ -0.2
SDC1-204ENST00000429035 LZTFL1Q9NQ48 299 aa13.83□□□□□ -0.2
SDC1-204ENST00000429035 FAM114A2Q9NRY5 505 aa13.83□□□□□ -0.2
SDC1-204ENST00000429035 PCYOX1Q9UHG3 505 aa13.83□□□□□ -0.2
SDC1-204ENST00000429035 SOX13Q9UN79 622 aa13.83□□□□□ -0.2
SDC1-204ENST00000429035 RUVBL1Q9Y265 456 aaKnown RBP13.83□□□□□ -0.2
SDC1-204ENST00000429035 DRG1Q9Y295 367 aaKnown RBP13.83□□□□□ -0.2
SDC1-204ENST00000429035 POLEQ07864 2286 aa13.83□□□□□ -0.2
SDC1-204ENST00000429035 TCRBV7S3A2A0A539 114 aa13.82□□□□□ -0.2
SDC1-204ENST00000429035 DYTNA2CJ06 578 aa13.82□□□□□ -0.2
SDC1-204ENST00000429035 CTAGE9A4FU28 777 aa13.82□□□□□ -0.2
SDC1-204ENST00000429035 PRPF4O43172 522 aaKnown RBP eCLIP13.82□□□□□ -0.22e-7■■□□□ 13.9
SDC1-204ENST00000429035 LRRTM2O43300 516 aa13.82□□□□□ -0.2
SDC1-204ENST00000429035 KLHL18O94889 574 aa13.82□□□□□ -0.2
SDC1-204ENST00000429035 CCNDBP1O95273 360 aa13.82□□□□□ -0.2
SDC1-204ENST00000429035 STATHP02808 62 aa13.82□□□□□ -0.2
SDC1-204ENST00000429035 HEXBP07686 556 aa13.82□□□□□ -0.2
SDC1-204ENST00000429035 EDN3P14138 238 aa13.82□□□□□ -0.2
SDC1-204ENST00000429035 PAMP19021 973 aa13.82□□□□□ -0.2
SDC1-204ENST00000429035 CDC25BP30305 580 aa13.82□□□□□ -0.2
SDC1-204ENST00000429035 EMP2P54851 167 aa13.82□□□□□ -0.2
SDC1-204ENST00000429035 CUL1Q13616 776 aa13.82□□□□□ -0.2
SDC1-204ENST00000429035 TYSND1Q2T9J0 566 aa13.82□□□□□ -0.2
SDC1-204ENST00000429035 HKDC1Q2TB90 917 aa13.82□□□□□ -0.2
SDC1-204ENST00000429035 ANKRD20A4Q4UJ75 823 aa13.82□□□□□ -0.2
SDC1-204ENST00000429035 THEMIS2Q5TEJ8 643 aa13.82□□□□□ -0.2
SDC1-204ENST00000429035 B3GNTL1Q67FW5 361 aaPredicted RBP13.82□□□□□ -0.2
SDC1-204ENST00000429035 LRRC8BQ6P9F7 803 aa13.82□□□□□ -0.2
SDC1-204ENST00000429035 IGFL2Q6UWQ7 119 aa13.82□□□□□ -0.2
SDC1-204ENST00000429035 C4orf22Q6V702 233 aa13.82□□□□□ -0.2
SDC1-204ENST00000429035 KBTBD2Q8IY47 623 aa13.82□□□□□ -0.2
SDC1-204ENST00000429035 OR1N1Q8NGS0 311 aa13.82□□□□□ -0.2
SDC1-204ENST00000429035 FAR1Q8WVX9 515 aa13.82□□□□□ -0.2
SDC1-204ENST00000429035 MAIP1Q8WWC4 291 aa13.82□□□□□ -0.2
SDC1-204ENST00000429035 ZNF669Q96BR6 464 aaPredicted RBP13.82□□□□□ -0.2
SDC1-204ENST00000429035 MMABQ96EY8 250 aaPredicted RBP13.82□□□□□ -0.2
SDC1-204ENST00000429035 BIRC8Q96P09 236 aa13.82□□□□□ -0.2
SDC1-204ENST00000429035 KIFC1Q9BW19 673 aa13.82□□□□□ -0.2
SDC1-204ENST00000429035 OLAHQ9NV23 265 aa13.82□□□□□ -0.2
SDC1-204ENST00000429035 PLA2G3Q9NZ20 509 aa13.82□□□□□ -0.2
SDC1-204ENST00000429035 SAMD15Q9P1V8 674 aa13.82□□□□□ -0.2
SDC1-204ENST00000429035 GALPQ9UBC7 116 aa13.82□□□□□ -0.2
SDC1-204ENST00000429035 CDC14AQ9UNH5 594 aa13.82□□□□□ -0.2
SDC1-204ENST00000429035 SCN3AQ9NY46 2000 aa13.81□□□□□ -0.2
SDC1-204ENST00000429035 CREBBPQ92793 2442 aa13.81□□□□□ -0.2
SDC1-204ENST00000429035 IDSB3KWA1 339 aa13.81□□□□□ -0.2
SDC1-204ENST00000429035 CEP104O60308 925 aa13.81□□□□□ -0.2
SDC1-204ENST00000429035 USP1O94782 785 aa13.81□□□□□ -0.2
SDC1-204ENST00000429035 ESR1P03372 595 aa13.81□□□□□ -0.2
SDC1-204ENST00000429035 CELA2AP08217 269 aa13.81□□□□□ -0.2
SDC1-204ENST00000429035 COX6A1P12074 109 aa13.81□□□□□ -0.2
SDC1-204ENST00000429035 PKMP14618 531 aaKnown RBP13.81□□□□□ -0.2
SDC1-204ENST00000429035 TPSB2P20231 275 aa13.81□□□□□ -0.2
SDC1-204ENST00000429035 OGNP20774 298 aaKnown RBP13.81□□□□□ -0.2
SDC1-204ENST00000429035 ATP5DP30049 168 aa13.81□□□□□ -0.2
SDC1-204ENST00000429035 PNLIPRP1P54315 467 aa13.81□□□□□ -0.2
SDC1-204ENST00000429035 KCNJ11Q14654 390 aa13.81□□□□□ -0.2
SDC1-204ENST00000429035 TPSAB1Q15661 275 aa13.81□□□□□ -0.2
SDC1-204ENST00000429035 TTLL9Q3SXZ7 439 aa13.81□□□□□ -0.2
SDC1-204ENST00000429035 MFSD4BQ5TF39 518 aa13.81□□□□□ -0.2
SDC1-204ENST00000429035 ZNF470Q6ECI4 717 aa13.81□□□□□ -0.2
SDC1-204ENST00000429035 KIAA0930Q6ICG6 404 aaPredicted RBP13.81□□□□□ -0.2
SDC1-204ENST00000429035 LAPTM4BQ86VI4 370 aa13.81□□□□□ -0.2
SDC1-204ENST00000429035 FJX1Q86VR8 437 aa13.81□□□□□ -0.2
SDC1-204ENST00000429035 SPNS2Q8IVW8 549 aa13.81□□□□□ -0.2
SDC1-204ENST00000429035 BCORP1Q8N888 145 aa13.81□□□□□ -0.2
SDC1-204ENST00000429035 PKP4Q99569 1192 aa13.81□□□□□ -0.2
SDC1-204ENST00000429035 PLCD4Q9BRC7 762 aa13.81□□□□□ -0.2
SDC1-204ENST00000429035 TRIM56Q9BRZ2 755 aaKnown RBP13.81□□□□□ -0.2
SDC1-204ENST00000429035 CSTF2TQ9H0L4 616 aaKnown RBP eCLIP13.81□□□□□ -0.21e-6■■□□□ 14
SDC1-204ENST00000429035 CCDC68Q9H2F9 335 aa13.81□□□□□ -0.2
SDC1-204ENST00000429035 C14orf105Q9NVL8 296 aa13.81□□□□□ -0.2
SDC1-204ENST00000429035 RIC8BQ9NVN3 520 aa13.81□□□□□ -0.2
SDC1-204ENST00000429035 UTP6Q9NYH9 597 aaKnown RBP13.81□□□□□ -0.2
SDC1-204ENST00000429035 KLK4Q9Y5K2 254 aa13.81□□□□□ -0.2
SDC1-204ENST00000429035 A0A0A6YYC8 382 aaPredicted RBP13.8□□□□□ -0.2
SDC1-204ENST00000429035 ARHGAP10A1A4S6 786 aa13.8□□□□□ -0.2
SDC1-204ENST00000429035 WIPF3A6NGB9 483 aa13.8□□□□□ -0.2
SDC1-204ENST00000429035 ZNF839A8K0R7 811 aa13.8□□□□□ -0.2
SDC1-204ENST00000429035 I3L1I5 382 aaPredicted RBP13.8□□□□□ -0.2
SDC1-204ENST00000429035 SMAPO00193 183 aa13.8□□□□□ -0.2
SDC1-204ENST00000429035 ZG16O60844 167 aa13.8□□□□□ -0.2
SDC1-204ENST00000429035 MATN4O95460 622 aa13.8□□□□□ -0.2
SDC1-204ENST00000429035 PRR35P0CG20 571 aa13.8□□□□□ -0.2
SDC1-204ENST00000429035 CXCR5P32302 372 aa13.8□□□□□ -0.2
SDC1-204ENST00000429035 SARNPP82979 210 aaKnown RBP13.8□□□□□ -0.2
Retrieved 100 of 20,778 RNA–protein pairs in 29.8 ms